View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10785_low_5 (Length: 326)
Name: NF10785_low_5
Description: NF10785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10785_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 8537449 - 8537146
Alignment:
| Q |
17 |
aatctctcagttcctcgtgcacctcgaggccttcctcacaaagtatgctttacaatagatgctgatggaattttgaacgtctcttgtgaggatgaaacct |
116 |
Q |
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| T |
8537449 |
aatctctcagttcctcgtgcacctcgaggccttcctcacaaagtatgctttacaatagatgctgatggaattttgaacgtctcttgtgaggatgaaacct |
8537350 |
T |
|
| Q |
117 |
ctgggaataagaaagatattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537349 |
ctgggaataagaaagatattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcaga |
8537250 |
T |
|
| Q |
217 |
agacataaagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtgaagaaagttatgaaggatatgaatgttagttctctg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
8537249 |
agacataaagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtgaagaaagttatgaaggatacgaatgttagttctttg |
8537150 |
T |
|
| Q |
317 |
cttc |
320 |
Q |
| |
|
|||| |
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| T |
8537149 |
cttc |
8537146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 35 - 276
Target Start/End: Complemental strand, 8569706 - 8569465
Alignment:
| Q |
35 |
gcacctcgaggccttcctcacaaagtatgctttacaatagatgctgatggaattttgaacgtctcttgtgaggatgaaacctctgggaataagaaagata |
134 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||| ||||| || || | |
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| T |
8569706 |
gcacctcgaggtcatcctcacaaagtatgctttacaatagatgctgatggaattttgaacgtctctgcagtggaagaaaccagtggcaataaaaatgaaa |
8569607 |
T |
|
| Q |
135 |
ttaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaa |
234 |
Q |
| |
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|||| ||||||||||| | ||||||||||||| | ||||| ||||||| || || ||||||||||||||||| || ||||||| |||||||| || |
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| T |
8569606 |
ttacaataactaatgagaagggaagattatcaaggggacaaattgagagaatgatccaggaagctgagaatttcaaggctcaagacatgaagttcaaaaa |
8569507 |
T |
|
| Q |
235 |
gaaatctgaggcaataaatgctttggatgactatctctacaa |
276 |
Q |
| |
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|||| ||| |||| ||||||||||||||| ||||| ||||| |
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| T |
8569506 |
gaaagttgaagcaagaaatgctttggatgattatctttacaa |
8569465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 294
Target Start/End: Original strand, 8383730 - 8383911
Alignment:
| Q |
113 |
acctctgggaataagaaagatattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaag |
212 |
Q |
| |
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|||| |||||||||| |||||||||| |||| ||||||| |||||| |||||||||||||||||| ||||||| || ||||| || ||||||||||| | |
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| T |
8383730 |
acctgtgggaataagcaagatattacaataaagaatgaaaatggaagtttatcaactgatgaaattgagagaatgatccaagaggcagagaatttcaagg |
8383829 |
T |
|
| Q |
213 |
cagaagacataaagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtgaagaaagttatgaa |
294 |
Q |
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| T |
8383830 |
ctgaagacatgaagtttatgaagaaagttaaagcaatgaatgctttggacgattatctttacaacatgaggaaagtaatgaa |
8383911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 298
Target Start/End: Complemental strand, 8609290 - 8609049
Alignment:
| Q |
57 |
aagtatgctttacaatagatgctgatggaattttgaacgtctcttgtgaggatgaaacctctgggaataagaaagatattaccataactaatgaaattgg |
156 |
Q |
| |
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||||||||||| | |||||||||||||| || || || |||||| ||||| |||||| ||| ||||||||||||||||| ||||| || |||| ||| |
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| T |
8609290 |
aagtatgctttgctatagatgctgatggtatattaaatgtctctgcagaggaagaaaccagtggtaataagaaagatattactataacaaaggaaaatgg |
8609191 |
T |
|
| Q |
157 |
aagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgct |
256 |
Q |
| |
|
|| | |||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||| | ||||| || |||||| | | ||||| |||| | |
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| T |
8609190 |
tcgactttcaactgaagaaattgagagaatgattcaagaagctgagaatttcaaagaggaagacttgaagtttaaaaagaaagttaaagcaatgaatgtt |
8609091 |
T |
|
| Q |
257 |
ttggatgactatctctacaatgtgaagaaagttatgaaggat |
298 |
Q |
| |
|
|||||||| || || ||||| || |||||| ||||||||| |
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| T |
8609090 |
ttggatgattacctttacaacatgcggaaagtaatgaaggat |
8609049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 113 - 298
Target Start/End: Complemental strand, 8601288 - 8601103
Alignment:
| Q |
113 |
acctctgggaataagaaagatattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaag |
212 |
Q |
| |
|
|||| |||||||| | |||| ||||| ||||| ||||||| |||||| ||||||| || |||||| ||||||| || |||||||||||||||||||||| |
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| T |
8601288 |
acctgtgggaataggcaagaaattacaataacgaatgaaaagggaagactatcaaccgaagaaattgagagaatgatccaagaagctgagaatttcaaag |
8601189 |
T |
|
| Q |
213 |
cagaagacataaagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtgaagaaagttatgaaggat |
298 |
Q |
| |
|
|||||||| ||||||||||||||| | | ||||| |||| | ||||||| ||||| |||| | ||| ||||| ||||||||| |
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| T |
8601188 |
atgaagacatgaagttcaagaagaaagttaaagcaatgaatgatctggatgattatctttacactatgagaaaagtaatgaaggat |
8601103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 29582609 - 29582792
Alignment:
| Q |
27 |
ttcctcgtgcacctcgaggccttcctcacaaagtatgctttacaatagatgctgatggaattttgaacgtctcttgtgaggatgaaacctctgggaataa |
126 |
Q |
| |
|
|||||||||| ||||| ||||||| | ||||||||||||| | |||||||| ||||| || | || ||| || |||||| |||||| |||| ||||| |
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| T |
29582609 |
ttcctcgtgctcctcgcggccttcgtatcaaagtatgctttgctatagatgcagatggtatactaaatgtcactgctgaggaagaaaccactggaaataa |
29582708 |
T |
|
| Q |
127 |
gaaagatattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaa |
210 |
Q |
| |
|
||||| ||||| ||||| |||| || ||||||||| |||||||| |||||| ||||||| || |||||||| ||||||||||| |
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|
| T |
29582709 |
aaaagagattacaataacaaatgtaaatggaagattgtcaactgaagaaattgagagaatgatccaagaagcagagaatttcaa |
29582792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 298
Target Start/End: Complemental strand, 8544939 - 8544765
Alignment:
| Q |
124 |
taagaaagatattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacata |
223 |
Q |
| |
|
|||||| || ||||| ||||||| ||||| |||||||||||||| || |||||| ||||||| || || |||||||| |||||||| || ||||||| |
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| T |
8544939 |
taagaatgaaattacaataactattgaaaatggaagattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatg |
8544840 |
T |
|
| Q |
224 |
aagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtgaagaaagttatgaaggat |
298 |
Q |
| |
|
||||||| || ||| ||| |||| |||||||||||| | ||||| |||||||||| |||||| ||||||||| |
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| T |
8544839 |
aagttcagaaaaaaagttgaagcaagaaatgctttggagtattatctttacaatgtgaggaaagtaatgaaggat |
8544765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 8590036 - 8589846
Alignment:
| Q |
32 |
cgtgcacctcgaggccttcctcacaaagtatgctttacaatagatgctgatggaattttgaacgtctcttgtgaggatgaaacctctgggaataagaaag |
131 |
Q |
| |
|
||||||||||| || |||||| | | ||||||||| | |||||||||||||| || || ||||| ||| |||||| |||| | ||| ||||| ||| |
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|
| T |
8590036 |
cgtgcacctcgtgggcttcctatccaggtatgcttttctatagatgctgatggtatattaaacgtgtctgctgaggaagaaagcagtggtaataaaaaaa |
8589937 |
T |
|
| Q |
132 |
atattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacat |
222 |
Q |
| |
|
||||||| ||||| ||||||| ||||||| | ||| || |||||| ||||||| || || ||||||||| | ||||| || |||||||| |
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|
| T |
8589936 |
atattacaataaccaatgaaaatggaagactgacaagcgaagaaattgagagaatgatccaggaagctgagcacttcaaggctgaagacat |
8589846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 299
Target Start/End: Complemental strand, 8581003 - 8580828
Alignment:
| Q |
124 |
taagaaagatattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacata |
223 |
Q |
| |
|
|||||| | |||||| ||||| ||||||| ||||||| | |||| || |||||| ||| ||| ||| | ||||||| | ||| || || ||||||| |
|
|
| T |
8581003 |
taagaaggctattacaataacgaatgaaaatggaagactttcaagagaggaaattgagaaaatgattttacaagctgaaatttttaaggctcaagacatg |
8580904 |
T |
|
| Q |
224 |
aagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtgaagaaagttatgaaggata |
299 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||| || ||||| ||||| |||| |||||| ||| |||||| |
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|
| T |
8580903 |
gagttcaagaagaaagttaaagcaataaatgctttggacgattatctttacaaagtgaggaaagtaatggaggata |
8580828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 8575548 - 8575431
Alignment:
| Q |
181 |
gagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtg |
280 |
Q |
| |
|
|||||| |||||||||||||| | |||||| || ||||||| |||||||||||||| | ||||||||||| ||||| || ||||| |||||| | |
|
|
| T |
8575548 |
gagaatgattcaagaagctgaaattttcaaggctcaagacatggagttcaagaagaaagttacagcaataaatgcattggacgattatcttcacaatgcg |
8575449 |
T |
|
| Q |
281 |
aagaaagttatgaaggat |
298 |
Q |
| |
|
| |||| | ||||||||| |
|
|
| T |
8575448 |
aggaaattaatgaaggat |
8575431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 299
Target Start/End: Complemental strand, 12527911 - 12527635
Alignment:
| Q |
23 |
tcagttcctcgtgcacctcgaggccttcctcacaaagtatgctttacaatagatgctgatggaattttgaacgtctcttgtgaggatgaaacctctggga |
122 |
Q |
| |
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|||||||||| ||||||||| ||||||| | ||||||||||| | ||||||||||| || || || || |||||| |||| ||||| ||| | |
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| T |
12527911 |
tcagttcctcatgcacctcgttaccttcctgtccaagtatgctttgctatagatgctgacggtatattaaaagtctctgcgaaggaaaaaaccagtggta |
12527812 |
T |
|
| Q |
123 |
ataagaaagatattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacat |
222 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||||||||||||| ||| |||||| |||||| || || ||||||||||||||||| || ||||| || |
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|
| T |
12527811 |
ataagaaagatattacaataacaaatgaaaatggaagattatcaagtgaagaaattgggagaatgatccaggaagctgagaatttcaaggctgaagatat |
12527712 |
T |
|
| Q |
223 |
aaagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtgaagaaagttatgaaggata |
299 |
Q |
| |
|
|||||||| |||||| | | ||||| |||||||||||||||||||| ||| |||||| |||| | |||||||||| |
|
|
| T |
12527711 |
gaagttcaaaaagaaagttaaagcaatcaatgctttggatgactatctttaccatgtgaggaaaatcatgaaggata |
12527635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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