View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10786_1 (Length: 910)
Name: NF10786_1
Description: NF10786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10786_1 |
 | |
|
| [»] scaffold0567 (1 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 833; Significance: 0; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 1 - 881
Target Start/End: Complemental strand, 37634181 - 37633301
Alignment:
| Q |
1 |
ccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634181 |
ccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccga |
37634082 |
T |
|
| Q |
101 |
aaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634081 |
aaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
37633982 |
T |
|
| Q |
201 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37633981 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
37633882 |
T |
|
| Q |
301 |
agcatgcagagcaccgttacctgggacaacaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37633881 |
agcatgcagagcaccgttacctgggacaacaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
37633782 |
T |
|
| Q |
401 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccacaatacgtttagagtgttgtttgaaattactcatttctctttatgtcgtgagcttcatgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37633781 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccaaaatacgtttagagtgttgtttgaaattactcatttctctctatgtcgtgagcttcatgt |
37633682 |
T |
|
| Q |
501 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaaccctcttactatatttaattattcaatta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37633681 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaaccctcttactatatttaattattcaatta |
37633582 |
T |
|
| Q |
601 |
tcccctttattgatattaacatttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacacttccataatttgaaaat |
700 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37633581 |
tccccttaattaatattaacatttgttaaattcttcttcccaatatttttcatactatttctctttatgtgcttgtttcacacttccataatttgaaaat |
37633482 |
T |
|
| Q |
701 |
gaagacaaaactgcgtgtactaatcatataatatgttatgtagaatatgttccattaacttaaccattcaatttacaatatccaattctcttctcttttc |
800 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37633481 |
gaagacaaaaccgcgtgtactaatcatataatatgttatgtagaatatgttccattaacttaaccattcaatttacaatatccaattctcttctcttttc |
37633382 |
T |
|
| Q |
801 |
tccttagtagatgttcttctaaccaaaatacgctctcattttaattataatatgattcctcttagattaaataatgatcaa |
881 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37633381 |
tccttagtagatgttcttctaatcaaaatacgctctcattttaattataatatgattcctcttaaattaaataatgatcaa |
37633301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Complemental strand, 37645383 - 37644685
Alignment:
| Q |
1 |
ccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37645383 |
ccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgaaatcatcttcgagaaccccgg |
37645284 |
T |
|
| Q |
101 |
aaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645283 |
aaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggtacatggaccccagagaagaggaagggctacaacctt |
37645184 |
T |
|
| Q |
201 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645183 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
37645084 |
T |
|
| Q |
301 |
agcatgcagagcaccgttacctgggacaacaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645083 |
agcatgcagagcaccgttacctgggacaacaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
37644984 |
T |
|
| Q |
401 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccacaatacgtttagagtgttgtttgaaattactcatttctctttatgtcgtgagcttcatgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
37644983 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccaaaatacgtttagagtgttgtttgaaattacttatttctctctatgtcgtgagcttcatgt |
37644884 |
T |
|
| Q |
501 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaaccctcttactatatttaattattcaatta |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
37644883 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaa-ccttttactatatttaattattcaattt |
37644785 |
T |
|
| Q |
601 |
tcccctttattgatattaacatttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacacttccataatttgaaaat |
700 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |||| ||| ||| ||| ||||||||||||| |
|
|
| T |
37644784 |
tccccttaattgattttaacatttattaaattcttcttcccaatatttctcgtactatttctcattatgagcttctttgacatttcgataatttgaaaat |
37644685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Complemental strand, 37637095 - 37636397
Alignment:
| Q |
1 |
ccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637095 |
ccgatgaacccccaaccgatctcaaggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccga |
37636996 |
T |
|
| Q |
101 |
aaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37636995 |
aaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
37636896 |
T |
|
| Q |
201 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37636895 |
ctggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
37636796 |
T |
|
| Q |
301 |
agcatgcagagcaccgttacctgggacaacaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37636795 |
agcatgcagagcaccgttacctgggacaacaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
37636696 |
T |
|
| Q |
401 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccacaatacgtttagagtgttgtttgaaattactcatttctctttatgtcgtgagcttcatgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
37636695 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccaaaatacgtttagagtgttgtttgaaattacttatttctctctatgtcgtgagcttcatgt |
37636596 |
T |
|
| Q |
501 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaaccctcttactatatttaattattcaatta |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
37636595 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaa-ccttttactatatttaattattcaattt |
37636497 |
T |
|
| Q |
601 |
tcccctttattgatattaacatttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacacttccataatttgaaaat |
700 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |||| ||| ||| ||| ||||||||||||| |
|
|
| T |
37636496 |
tccccttaattgatattaacatttattaaattcttcttcccaatatttctcgtactatttctcattatgagcttctttgacatttcgataatttgaaaat |
37636397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Complemental strand, 37640009 - 37639311
Alignment:
| Q |
1 |
ccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640009 |
ccgatgaacccccaaccgatctcaaggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccga |
37639910 |
T |
|
| Q |
101 |
aaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639909 |
aaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
37639810 |
T |
|
| Q |
201 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639809 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
37639710 |
T |
|
| Q |
301 |
agcatgcagagcaccgttacctgggacaacaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639709 |
agcatgcagagcaccgttacctgggacaacaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
37639610 |
T |
|
| Q |
401 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccacaatacgtttagagtgttgtttgaaattactcatttctctttatgtcgtgagcttcatgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37639609 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccaaaatacgtttagagtgttgtttgaaattactcatttctctctatgtcgtgagcttcatgt |
37639510 |
T |
|
| Q |
501 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaaccctcttactatatttaattattcaatta |
600 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
37639509 |
gattgttaacactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaa-ccttttactatatttaattattcaattt |
37639411 |
T |
|
| Q |
601 |
tcccctttattgatattaacatttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacacttccataatttgaaaat |
700 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || | |||| ||| ||| ||| ||||||||||||| |
|
|
| T |
37639410 |
tccccttaattgatattaacatttattaaattcttcttcccaatatttctcgtactatttctcattttgagcttctttgacatttcgataatttgaaaat |
37639311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Complemental strand, 37648296 - 37647598
Alignment:
| Q |
1 |
ccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648296 |
ccgatgaacccccaaccgatctcaaggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccga |
37648197 |
T |
|
| Q |
101 |
aaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648196 |
aaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
37648097 |
T |
|
| Q |
201 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648096 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
37647997 |
T |
|
| Q |
301 |
agcatgcagagcaccgttacctgggacaacaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37647996 |
agcatgcagagcaccgttacctgggacaacaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
37647897 |
T |
|
| Q |
401 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccacaatacgtttagagtgttgtttgaaattactcatttctctttatgtcgtgagcttcatgt |
500 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37647896 |
tgtttgcggtatcgttaaggatatgccaaggcctccaccaaaatacgtttagagtgttgtttgaaattactcatttctctctatgtcgtgagcttcatgt |
37647797 |
T |
|
| Q |
501 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaaccctcttactatatttaattattcaatta |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
37647796 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcga-ccttttactatatttaattattcaattt |
37647698 |
T |
|
| Q |
601 |
tcccctttattgatattaacatttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacacttccataatttgaaaat |
700 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || | |||| ||| ||| ||| ||||||||||||| |
|
|
| T |
37647697 |
tccccttaattgatattaacatttattaaattcttcttcccaatatttctcgtactatttctcattttgagcttctttgacatttcgataatttgaaaat |
37647598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Complemental strand, 37651208 - 37650510
Alignment:
| Q |
1 |
ccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37651208 |
ccgatgaacccccaatcgatctcagggccatcaccattgcacctaatgtcatgcaaactactttccgtaccttcattgaaatcatcttcgagaaccccgg |
37651109 |
T |
|
| Q |
101 |
aaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37651108 |
aaaggtcctccaatcttacaatttgggtggttattctttcttcgtcgtcgctggtgagccaggtacatggaccccagagaagaggaagggctacaacctt |
37651009 |
T |
|
| Q |
201 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37651008 |
ttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcag |
37650909 |
T |
|
| Q |
301 |
agcatgcagagcaccgttacctgggacaacaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37650908 |
agcatgcagagcaccgttacctgggacaacaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaact |
37650809 |
T |
|
| Q |
401 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccacaatacgtttagagtgttgtttgaaattactcatttctctttatgtcgtgagcttcatgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37650808 |
tgtttgcggtatcgtcaaggatatgccaaggcctccaccaaaatacgtttagagcgttgtttgaaattactcatttctctctatgtcgtgagcttcatgt |
37650709 |
T |
|
| Q |
501 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcaaccctcttactatatttaattattcaatta |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
37650708 |
gattgttagcactaagtcatagagattcattatattgtatgttatctattggttgatttatatataatcga-ccttttactatatttaattattcaattt |
37650610 |
T |
|
| Q |
601 |
tcccctttattgatattaacatttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacacttccataatttgaaaat |
700 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |||| ||| ||| ||| ||||||||||||| |
|
|
| T |
37650609 |
tccccttaattgatattaacatttattaaattcttcttcccaatatttctcgtactatttctcattatgagcttctttgacatttcgataatttgaaaat |
37650510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 665 - 777
Target Start/End: Complemental strand, 37636391 - 37636283
Alignment:
| Q |
665 |
ttatatgcttgtttcacacttccataatttgaaaatgaagacaaaactgcgtgtactaatcatataatatgttatgtagaatatgttccattaacttaac |
764 |
Q |
| |
|
|||| ||||| ||| ||| ||| ||||||||||||| || |||||| || ||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37636391 |
ttatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtg----aatcaaataatatgttaagtagaatatgttccattaacttaac |
37636296 |
T |
|
| Q |
765 |
cattcaatttaca |
777 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
37636295 |
cattgaatttaca |
37636283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 665 - 777
Target Start/End: Complemental strand, 37639305 - 37639197
Alignment:
| Q |
665 |
ttatatgcttgtttcacacttccataatttgaaaatgaagacaaaactgcgtgtactaatcatataatatgttatgtagaatatgttccattaacttaac |
764 |
Q |
| |
|
|||| ||||| ||| ||| ||| ||||||||||||| || |||||| || ||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37639305 |
ttatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtg----aatcaaataatatgttaagtagaatatgttccattaacttaac |
37639210 |
T |
|
| Q |
765 |
cattcaatttaca |
777 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
37639209 |
cattgaatttaca |
37639197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 665 - 777
Target Start/End: Complemental strand, 37644679 - 37644571
Alignment:
| Q |
665 |
ttatatgcttgtttcacacttccataatttgaaaatgaagacaaaactgcgtgtactaatcatataatatgttatgtagaatatgttccattaacttaac |
764 |
Q |
| |
|
|||| ||||| ||| ||| ||| ||||||||||||| || |||||| || ||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37644679 |
ttatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtg----aatcaaataatatgttaagtagaatatgttccattaacttaac |
37644584 |
T |
|
| Q |
765 |
cattcaatttaca |
777 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
37644583 |
cattgaatttaca |
37644571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 665 - 777
Target Start/End: Complemental strand, 37647592 - 37647484
Alignment:
| Q |
665 |
ttatatgcttgtttcacacttccataatttgaaaatgaagacaaaactgcgtgtactaatcatataatatgttatgtagaatatgttccattaacttaac |
764 |
Q |
| |
|
|||| ||||| ||| ||| ||| ||||||||||||| || |||||| || ||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37647592 |
ttatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtg----aatcaaataatatgttaagtagaatatgttccattaacttaac |
37647497 |
T |
|
| Q |
765 |
cattcaatttaca |
777 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
37647496 |
cattgaatttaca |
37647484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 665 - 777
Target Start/End: Complemental strand, 37650504 - 37650396
Alignment:
| Q |
665 |
ttatatgcttgtttcacacttccataatttgaaaatgaagacaaaactgcgtgtactaatcatataatatgttatgtagaatatgttccattaacttaac |
764 |
Q |
| |
|
|||| ||||| ||| ||| ||| ||||||||||||| || |||||| || ||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37650504 |
ttatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtg----aatcaaataatatgttaagtagaatatgttccattaacttaac |
37650409 |
T |
|
| Q |
765 |
cattcaatttaca |
777 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
37650408 |
cattgaatttaca |
37650396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 777 - 856
Target Start/End: Complemental strand, 37638780 - 37638697
Alignment:
| Q |
777 |
aatatccaattctcttctcttttctccttagta----gatgttcttctaaccaaaatacgctctcattttaattataatatgat |
856 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
37638780 |
aatatccaattctcttctcttttctcctcagtacgtagatgttcttctaaccaaaatagtctctcattttaatcataatgtgat |
37638697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 777 - 856
Target Start/End: Complemental strand, 37635866 - 37635783
Alignment:
| Q |
777 |
aatatccaattctcttctcttttctccttagta----gatgttcttctaaccaaaatacgctctcattttaattataatatgat |
856 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| |||||| ||||| |||| |
|
|
| T |
37635866 |
aatatccaattctcttctcttttctcctcagtacgtagatgttcttctaaccaaaatagtctctcaatttaatcataatgtgat |
37635783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 777 - 856
Target Start/End: Complemental strand, 37644154 - 37644071
Alignment:
| Q |
777 |
aatatccaattctcttctcttttctccttagta----gatgttcttctaaccaaaatacgctctcattttaattataatatgat |
856 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||| ||||| |||| |
|
|
| T |
37644154 |
aatatccaattctcttctcttttctcctcagtacgtagatgttcttctaaccaaagtagtctctcattttaatcataatgtgat |
37644071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 32972932 - 32972870
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||| |||| |
|
|
| T |
32972932 |
atttgttatattcttcttcccaatatttttcatagtatttcttattatgtgcttgtttgacac |
32972870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 856
Target Start/End: Complemental strand, 37647067 - 37646984
Alignment:
| Q |
777 |
aatatccaattctcttctcttttctccttagta----gatgttcttctaaccaaaatacgctctcattttaattataatatgat |
856 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||| |||||||||||||||||| || ||||||||||||| ||||| |||| |
|
|
| T |
37647067 |
aatatccaattctcttctattttctcctcagtacgtagatgttcttctaaccaaagtagtctctcattttaatcataatgtgat |
37646984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 856
Target Start/End: Complemental strand, 37649980 - 37649897
Alignment:
| Q |
777 |
aatatccaattctcttctcttttctccttagta----gatgttcttctaaccaaaatacgctctcattttaattataatatgat |
856 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |||||||||||||||||| || ||||||||||||| ||||| |||| |
|
|
| T |
37649980 |
aatatccaattctcttctcatttctcctcagtacgtagatgttcttctaaccaaagtagtctctcattttaatcataatgtgat |
37649897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 42397937 - 42397875
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
42397937 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgacac |
42397875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 20931159 - 20931097
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
20931159 |
atttgttatatttttcttcccaatgtttttcatactatttcttattacgtgcttgtttgacac |
20931097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 60 - 301
Target Start/End: Complemental strand, 32387471 - 32387230
Alignment:
| Q |
60 |
actttccgtaccttcattgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagc |
159 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||| |||||||||||||| |||| ||||| |
|
|
| T |
32387471 |
actttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagc |
32387372 |
T |
|
| Q |
160 |
caggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcat |
259 |
Q |
| |
|
|||| | |||||| ||||||||||| ||| |||||||||||||||||| | ||||| |||||| | || |||||||| || |||||||| ||||| || |
|
|
| T |
32387371 |
caggcaaatggacaccagagaagagaaagaactacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattat |
32387272 |
T |
|
| Q |
260 |
gttgacattcgacaatgctggtatgtggcaattgaggtcaga |
301 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||| ||||| |
|
|
| T |
32387271 |
gttgacattcgacaacgctggtatgtggaacttgagatcaga |
32387230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 213 - 332
Target Start/End: Complemental strand, 32380956 - 32380837
Alignment:
| Q |
213 |
agcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagc |
312 |
Q |
| |
|
||||||||||| ||||| || || || ||||||||||||||||| |||||| |||||||||| | ||| ||||| | |||||||||||| ||| ||| |
|
|
| T |
32380956 |
agcagacacaccattcaagtatttccaaaatcatgggctgcaataatgttgtcattcgacaacgttggagtgtggaatttgaggtcagagattgctgaga |
32380857 |
T |
|
| Q |
313 |
accgttacctgggacaacaa |
332 |
Q |
| |
|
| |||||| ||||||||||| |
|
|
| T |
32380856 |
atcgttacttgggacaacaa |
32380837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 32387162 - 32387085
Alignment:
| Q |
369 |
agggatgaatacaaccttcctgagactcaacttgtttgcggtatcgtcaaggatatgccaaggcctccaccacaatac |
446 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| | || ||||| || ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
32387162 |
agggatgagtacaatcttccagatactcatcaagtctgcggcattgtcaaggatatgccaaggcctgcactacaatac |
32387085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 16276641 - 16276579
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
16276641 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgacac |
16276579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 22827806 - 22827744
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
22827806 |
atttgttagattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgacac |
22827744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 683
Target Start/End: Original strand, 28318141 - 28318203
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||| || |||||| |||| |
|
|
| T |
28318141 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtggttgtttgacac |
28318203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Original strand, 19043222 - 19043284
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
19043222 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgacac |
19043284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 39836657 - 39836595
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
39836657 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgacac |
39836595 |
T |
|
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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 29999302 - 29999240
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
29999302 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgacac |
29999240 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Original strand, 40949031 - 40949093
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
40949031 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgacac |
40949093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 704
Target Start/End: Complemental strand, 43384370 - 43384288
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacacttccataatttgaaaatgaag |
704 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||| |||||||||| |||| || |||||| ||||||| |||| ||||||||||| |
|
|
| T |
43384370 |
atttattatattcttcttcccaatgtttttcgtactatttcttattatgtgtttgtttgacacttcaataa-ctgaaaatgaag |
43384288 |
T |
|
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Target: scaffold0567 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0567
Description:
Target: scaffold0567; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 7487 - 7425
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
7487 |
atttgttatattcttctttccaatgtttttcatactatttcttattatgtgcttgtttgacac |
7425 |
T |
|
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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 683
Target Start/End: Original strand, 109247 - 109309
Alignment:
| Q |
621 |
atttgttaaattcttcttcccaatatttttcatactatttctctttatatgcttgtttcacac |
683 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||| || |||||| |||| |
|
|
| T |
109247 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtggttgtttgacac |
109309 |
T |
|
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