View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10786_16 (Length: 323)
Name: NF10786_16
Description: NF10786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10786_16 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 34344082 - 34344263
Alignment:
| Q |
12 |
aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttgaaatgtg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34344082 |
aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttctaatgtg |
34344181 |
T |
|
| Q |
112 |
tgtatttgtatggtccaccaaatcaatgaatcc-nnnnnnnntgaaggaaagataacgtgtgtggtgggtatttgtttcaat |
192 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |
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| T |
34344182 |
tgtatttgtatggtccaccaaatcaatgaatccaaaaaaaaatgaaggaaagataacgtgtgttgtggatatttgtttcaat |
34344263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 34344310 - 34344394
Alignment:
| Q |
239 |
ggtctgtactctctgccactcccatgtgctcatgtctcaatttcaatttcaattttcccgcttgcaatttgccaggggttgtttc |
323 |
Q |
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|||||||||||||||||||| |||| ||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
34344310 |
ggtctgtactctctgccacttccatctgctcttgtctcaatttaaatttcaactttcccgcttgcaatttgcccggggttgtttc |
34344394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 18913001 - 18912956
Alignment:
| Q |
278 |
atttcaatttcaattttcccgcttgcaatttgccaggggttgtttc |
323 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
18913001 |
atttgaatttcaattttcccgcttgcaatttaccaggggttgtttc |
18912956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 18913197 - 18913128
Alignment:
| Q |
69 |
ctttggagagataacaagtgataaaataaaatgttgaaatgtgtgtatttgtatggtccaccaaatcaat |
138 |
Q |
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| T |
18913197 |
ctttggagagataacaagtggtaaaagataaggttgtgatatgtgtatttgtaaggtccaccaactcaat |
18913128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 3017805 - 3017979
Alignment:
| Q |
19 |
aagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttgaaatgtgtgtattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3017805 |
aagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttgtaatgtgtgtattt |
3017904 |
T |
|
| Q |
119 |
gtatggtccaccaaatcaatgaatc-cnnnnnnnntgaaggaaagataacgtgtgtggtgggtatttgtttcaat |
192 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
3017905 |
gtatggtccaccaaatcaatgaatcaaaaaaaaaatgaaggaaagataatgtgtgtggtgggtatttgtttcaat |
3017979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 3018023 - 3018102
Alignment:
| Q |
244 |
gtactctctgccactcccatgtgctcatgtctcaatttcaatttcaattttcccgcttgcaatttgccaggggttgtttc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
3018023 |
gtactctctgccactcccatgtgctcatgtctcaatttaagtttcaattttcccgcttgcaatttgccaggggttgtttc |
3018102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 37278739 - 37278612
Alignment:
| Q |
12 |
aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttgaaatgtg |
111 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
37278739 |
aagaaggaaaaaggaagaatggcaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaagaaaatgttgtaatgtg |
37278640 |
T |
|
| Q |
112 |
tgtatttgtatggtccaccaaatcaatg |
139 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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| T |
37278639 |
tgtatttgtatgatccaccaaatcaatg |
37278612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 37278512 - 37278435
Alignment:
| Q |
246 |
actctctgccactcccatgtgctcatgtctcaatttcaatttcaattttcccgcttgcaatttgccaggggttgtttc |
323 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| || |||||| || ||||||| |
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| T |
37278512 |
actctctgccactcccatgtgctcttgtctctatttaaatttcaattttcccgcttataaattgccaaggattgtttc |
37278435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 46420331 - 46420229
Alignment:
| Q |
12 |
aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttgaaatgtg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46420331 |
aagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttgtaatgtg |
46420232 |
T |
|
| Q |
112 |
tgt |
114 |
Q |
| |
|
||| |
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|
| T |
46420231 |
tgt |
46420229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 46420155 - 46420089
Alignment:
| Q |
249 |
ctctgccactcccatgtgctcatgtctcaatttcaatttcaattttcccgcttgcaatttgccaggg |
315 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
46420155 |
ctctgccactcccatgtgctcatgtctcaatttaaatttcaatttttccgcttgcaatttgccaggg |
46420089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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