View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10786_17 (Length: 320)
Name: NF10786_17
Description: NF10786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10786_17 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0653 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 8316620 - 8316925
Alignment:
| Q |
14 |
gaaccttggattgttgtgctctatgcaccatggtgccgcttctgtcaggtaaaatgatatgcctgaacttgcaatattgcctgaactttcaatattatgt |
113 |
Q |
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| T |
8316620 |
gaaccttggattgttgtgctctatgcaccatggtgccgcttctgtcaggtaaaatgatatgcctgaacttgcaatattgcctgaactttcaatattatgt |
8316719 |
T |
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| Q |
114 |
taccattctcttactaaaggtgcattatttcatttgacttgaaatttcaattaataacatgtttttatcttaattcttacaggctatggaggaatcatac |
213 |
Q |
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| T |
8316720 |
taccattctcttactaatggtgcattatttcatttgacttgaaatttcaattaataacatg-ttttatcttaattcttacaggctatggaggaatcatac |
8316818 |
T |
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| Q |
214 |
gtggatttggcagagaatttagcagggtcaggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaatacgcaaagagtgaactagggttgg |
313 |
Q |
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| T |
8316819 |
gtgaatttggcagagaatttagcagggtcaggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaatacgcaaagagtgaactagggttgg |
8316918 |
T |
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| Q |
314 |
gaagctt |
320 |
Q |
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| T |
8316919 |
gaagctt |
8316925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 91 - 319
Target Start/End: Complemental strand, 2236128 - 2235900
Alignment:
| Q |
91 |
tgcctgaactttcaatattatgttaccattctcttactaaaggtgcattatttcatttgacttgaaatttcaattaataacatgtttttatcttaattct |
190 |
Q |
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| T |
2236128 |
tgcctgaactttcaatattatgttaccattctcttataaaagctgcattacttcatttgacttgaaatttcaattaataacatgttta-atctaaattct |
2236030 |
T |
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| Q |
191 |
tacaggctatggaggaatcatacgtg--gatttggcagagaatttagcagggtcaggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaa |
288 |
Q |
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| T |
2236029 |
tacaggctatggacgaatcatatgtgtggatttggcagagaacttagcagggtcaggagtgaaggttggaaaatttagagcggacggtgatggaaaagaa |
2235930 |
T |
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| Q |
289 |
tacgcaaagagtgaactagggttgggaagct |
319 |
Q |
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| T |
2235929 |
tgtgcaaagagtgaacta-ggttgggaagct |
2235900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 91 - 320
Target Start/End: Complemental strand, 34806174 - 34805947
Alignment:
| Q |
91 |
tgcctgaactttcaatattatgttaccattctcttactaaaggtgcattatttcatttgacttgaaatttcaattaataacatgtttttatcttaattct |
190 |
Q |
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| T |
34806174 |
tgcctgaactttcaatattatgttaccattctcttataaaagctgcattacttcgtttgacttgaaatttcaattaataacatgttta-atctaatttct |
34806076 |
T |
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| Q |
191 |
tacaggctatggaggaatcatacgtggatttggcagagaatttagcagggtcaggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaata |
290 |
Q |
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| T |
34806075 |
tacaggctatggaggaatcgtatgtggatttggcagagaacttagtagggtcaggagtgaaggttagaaaatttagagcggacggtgatggaaaagaatg |
34805976 |
T |
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| Q |
291 |
cgcaaagagtgaactagggttgggaagctt |
320 |
Q |
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| T |
34805975 |
tgcaaagagtgaacta-ggttgggaagctt |
34805947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 96 - 320
Target Start/End: Complemental strand, 7432 - 7208
Alignment:
| Q |
96 |
gaactttcaatattatgttaccattctcttactaaa-ggtgcattatttcatttgacttgaaatttcaattaataacatgtttttatcttaattcttaca |
194 |
Q |
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| T |
7432 |
gaactttcaatattatgttactactctcttactaaaaggagcattacttcattttacttgaaatttcaattaataacaagttta-acctaaattcttaca |
7334 |
T |
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| Q |
195 |
ggctatggaggaatcatacgtggatttggcagagaatttagcagggtcaggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaatacgca |
294 |
Q |
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| T |
7333 |
tgctatggaggaatcgtatgtgaatttggcagagaatatagcagggtcaggagtgaaggttgggaaatttatagcggatggtgatggaaaagaatatgca |
7234 |
T |
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| Q |
295 |
aagagtgaactagggttgggaagctt |
320 |
Q |
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| T |
7233 |
aagagtgaactatggttgggaagctt |
7208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 7480 - 7435
Alignment:
| Q |
30 |
tgctctatgcaccatggtgccgcttctgtcaggtaaaatgatatgc |
75 |
Q |
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| T |
7480 |
tgctctatgcatcatggtgccacttttgtcaggtacaatgatatgc |
7435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 96 - 320
Target Start/End: Complemental strand, 9324915 - 9324691
Alignment:
| Q |
96 |
gaactttcaatattatgttaccattctcttactaaa-ggtgcattatttcatttgacttgaaatttcaattaataacatgtttttatcttaattcttaca |
194 |
Q |
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| T |
9324915 |
gaactttcaatattatgttactactctcttactaaaaggagcattacttcattttacttgaaatttcaattaataacaagttta-acctaaattcttaca |
9324817 |
T |
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| Q |
195 |
ggctatggaggaatcatacgtggatttggcagagaatttagcagggtcaggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaatacgca |
294 |
Q |
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| T |
9324816 |
tgctatggaggaatcgtatgtgaatttggcagagaatatagcagggtcaggagtgaaggttgggaaatttatagcggatggtgatggaaaagaatatgca |
9324717 |
T |
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| Q |
295 |
aagagtgaactagggttgggaagctt |
320 |
Q |
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| T |
9324716 |
aagagtgaactatggttgggaagctt |
9324691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 9324963 - 9324918
Alignment:
| Q |
30 |
tgctctatgcaccatggtgccgcttctgtcaggtaaaatgatatgc |
75 |
Q |
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| T |
9324963 |
tgctctatgcatcatggtgccacttttgtcaggtacaatgatatgc |
9324918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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