View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10786_2 (Length: 613)
Name: NF10786_2
Description: NF10786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10786_2 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 115 - 605
Target Start/End: Complemental strand, 21210792 - 21210290
Alignment:
| Q |
115 |
aagtgtttattattgtctagctttctgcaactactcttgtacagtacactagtacaatgttgattacttccgagtcatccttaaattaaatgttttattg |
214 |
Q |
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||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||| |||| | |||||||| ||||| ||||||| | | |
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| T |
21210792 |
aagtgtttattatcgtctagctttctacaactactcttatacagtaccctagtacaatgttgattatttccaaatcatccttgaattagatgttttct-g |
21210694 |
T |
|
| Q |
215 |
ggataacaatccattaatctaatgctatcttgtat-cacaaatacgttttgtaactaaagtgtttatgctttgtttcttctctctcgacaggaccctgaa |
313 |
Q |
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|||||||||||||||||||||||||| ||||| || |||||||||||||||||||| || ||| ||||||||||||| | | ||||||||||||| |
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| T |
21210693 |
ggataacaatccattaatctaatgctgtcttgcattcacaaatacgttttgtaactgaa---tttttgctttgtttcttattac---acaggaccctgaa |
21210600 |
T |
|
| Q |
314 |
aacaagaggcctattcgttttgatgagaacctcaagaaggtctttgcagggagagatgaatttggtatgcttgagattactgagttgacaagtcctcact |
413 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
21210599 |
aacaagaggcctattcgctttgatgagaacctcaagaaggtctttgcagggagagatgaatttggtatgcttgagattgctgagttgacaagtcctcgct |
21210500 |
T |
|
| Q |
414 |
cccgtactcgtatctccatctccaaatcc------------------ggtaaaccttggtccaaccacctcctctctcctccatgtcagcatattctcaa |
495 |
Q |
| |
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|||||||||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||| |||||| || |
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| T |
21210499 |
cccgtactcgtacctccatctccaaatcctcctctgaccccaactccggtaaaccctggtccaaccaccacctctctcctccaggtcagcgtattcttaa |
21210400 |
T |
|
| Q |
496 |
caccttactcgacacgccccctaatacccccattcaactcaacaatattctctctccccttttcacccaacctcatccacacccgactcgtttatctcgt |
595 |
Q |
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||||||||||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21210399 |
caccttactcgacacaccccctgataccccccttcacctcaacaatattctctctccccttttcacccaacctcatccacaccccactcgtttatctcgt |
21210300 |
T |
|
| Q |
596 |
gatattcttg |
605 |
Q |
| |
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|||||||||| |
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| T |
21210299 |
gatattcttg |
21210290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 6 - 379
Target Start/End: Complemental strand, 21206630 - 21206257
Alignment:
| Q |
6 |
tatatgcaattttgtgcagcttatatgat----aatggatgatgcagatgggttctatcgtcaattttggagccatct-------tatctaaagttcctt |
94 |
Q |
| |
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||||||||||| | ||||||||||||||| |||||| ||||||||||||| |||| || ||||||||||||||| ||||||||||||| | |
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| T |
21206630 |
tatatgcaattctatgcagcttatatgattgataatggaagatgcagatgggt-ctattgttaattttggagccatcaatcatcatatctaaagttccat |
21206532 |
T |
|
| Q |
95 |
gtttgatataattacaaatgaagtgtttattattgtctagctttctgcaactactcttgtacagtacactagtacaatgttgattacttccgagtcatcc |
194 |
Q |
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| T |
21206531 |
gtttgatataattacaaataaagtgtttattatcatctagctttctacaactactcttgtacagtacactagtacaatgttgattacttctgagtcatcc |
21206432 |
T |
|
| Q |
195 |
ttaaattaaatgttttattgggataacaatccattaatctaatgctatcttgta-tcacaaatacgttttgtaactaaagtgtttatgctttgtttcttc |
293 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| || ||| |||||||| ||| | |
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| T |
21206431 |
ttaaattaaatgtttt-ctgggataacaatccattaatctaatgctatcttgcattcacaaatacgttttataactgaa---tttttgctttgtgtctac |
21206336 |
T |
|
| Q |
294 |
tctctcgacaggaccctgaaaacaagaggcctattcgttttgatgagaacctcaagaaggtctttgcagggagagatgaatttggt |
379 |
Q |
| |
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|||||||||||||||||||| || |||||||| ||||||||| || ||| ||||||||||||||||||||||| ||||| |
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| T |
21206335 |
-------acaggaccctgaaaacaagatgcttattcgttgtgatgagaagctgaaggaggtctttgcagggagagatgaagttggt |
21206257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 21210860 - 21210789
Alignment:
| Q |
18 |
tgtgcagcttatatgataatggatgatgcagatgggttctatcgtcaattttggagccatcttatctaaagt |
89 |
Q |
| |
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| T |
21210860 |
tgtgcagcttatatgataatggatgatgcagattggttctattgtcaattttggagccatcttatctaaagt |
21210789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42186650 - 42186409
Alignment:
| Q |
1 |
tgttgtatatgcaattttgtgcagcttatatgataatggatgatgcagatgggttctatcgtcaattttggagccatcttatctaaagttccttgtttga |
100 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42186650 |
tgttgtatacgcaattctgtgcagcttatatgataatggatgatgcagatgggttctatcgttaattttggagccatcttatctaaagttccttgtttga |
42186551 |
T |
|
| Q |
101 |
tataattacaaatgaagtgtttattattgtctagctttctgcaactactcttgtacagtacactagtac-aatgttgattacttccgagtcatccttaaa |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42186550 |
tataattacaaatgaagtgtttattattgtctatctttctgcaactactcttgtacagtacactagtacaaatgttgattacttccgagtcatccttaaa |
42186451 |
T |
|
| Q |
200 |
ttaaatgttttattgggataacaatccattaatctaatgcta |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42186450 |
ttaaatgttttattgggataacaatccattaatcttatgcta |
42186409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 391
Target Start/End: Original strand, 243684 - 243774
Alignment:
| Q |
301 |
acaggaccctgaaaacaagaggcctattcgttttgatgagaacctcaagaaggtctttgcagggagagatgaatttggtatgcttgagatt |
391 |
Q |
| |
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|||| ||||||| || ||||||| |||||| | ||| ||||| || |||||||| |||||||||||||||||| ||| ||||||||||||| |
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| T |
243684 |
acagaaccctgagaaaaagaggcttattcgctgtgacgagaagctgaagaaggtatttgcagggagagatgaagttgatatgcttgagatt |
243774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 243387 - 243440
Alignment:
| Q |
33 |
ataatggatgatgcagatgggttctatcgtcaattttggagccatcttatctaa |
86 |
Q |
| |
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||||||| |||||||| ||| |||||| ||||||||||||||||||| |||||| |
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| T |
243387 |
ataatggttgatgcagttggattctattgtcaattttggagccatctaatctaa |
243440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 243472 - 243510
Alignment:
| Q |
121 |
ttattattgtctagctttctgcaactactcttgtacagt |
159 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
243472 |
ttattattatctagctttctacaactactcttgtacagt |
243510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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