View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10786_3 (Length: 540)
Name: NF10786_3
Description: NF10786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10786_3 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 315 - 530
Target Start/End: Complemental strand, 7318241 - 7318027
Alignment:
| Q |
315 |
tgagttttattcacgcaccgattcacggtgtaaactcgcgacgtgaaaatgctcatgcactctcggtgggacccacggaggagatagatatcagccgttg |
414 |
Q |
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| T |
7318241 |
tgagttttattcacgcaccgattcacggtgtaaactcgcgacgtgaaaatgctcatgcactctcggtgggacccacggaggagatagatctcagccgttg |
7318142 |
T |
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| Q |
415 |
gatttagtacttgttctttgagaagaataaatggaccagctagtatgatatcatgaaatttcacatcatacttgctgagagtgggatagttaaaaggagt |
514 |
Q |
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| T |
7318141 |
gatttagtacttgttctttgagaagaataaatggaccagctagtatgatatgatgaaatttcacatcatacttgccgagagtgggatagttaaaa-gagt |
7318043 |
T |
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| Q |
515 |
tcggatccgctccatt |
530 |
Q |
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||||||| |||||||| |
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| T |
7318042 |
tcggatctgctccatt |
7318027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 7318538 - 7318378
Alignment:
| Q |
1 |
aaaacaaaaactaacatgcaacaaaatcgaatttctaccttcgttggaaatggtagatgtatgaactcactctccactgaaattatcgataatggtcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7318538 |
aaaacaaaaactaacatgcaacaaaatcgaatttctaccttcgttggaaatggtagatgtatgaactcactctccactgaaattatcgataatggtcttc |
7318439 |
T |
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| Q |
101 |
cacctctgtatcaaattacacaaacaaattcaaataattaagtaaaatccatgcaattctt |
161 |
Q |
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| T |
7318438 |
cacctctgtatcaaattacacaaacaaattcaaataattaagtaaaatccatgcaattctt |
7318378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 316 - 512
Target Start/End: Original strand, 2720273 - 2720464
Alignment:
| Q |
316 |
gagttttattcacgcaccgattcacggtgtaaactcgcgacgtgaaaatgctcatgcactctcggtgggacccacgg-aggagatagatatcagccgttg |
414 |
Q |
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|||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |
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| T |
2720273 |
gagttttattcacgcaccgagtcatggtataaactcgcgacgtgaaaatgctcatgcactctcggtgggacccacgggaggagata--tctcagccgttg |
2720370 |
T |
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| Q |
415 |
gatttagtacttgttctttgagaagaataaatggaccagctagtatgatatcatgaaatttcacatcatacttgctgagagtgggatagttaaaagga |
512 |
Q |
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| T |
2720371 |
gatttaatacttgttctttgagaagaagaaatggaccagctggtatgatatgatgaaatttcacatcata----ctgagagtgggatagttaaaagga |
2720464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 2720013 - 2720145
Alignment:
| Q |
1 |
aaaacaaaaactaacatgcaacaaaatcgaatttctaccttcgttggaaatggtagatgtatgaactcactctccactgaaattatcgataatggtcttc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2720013 |
aaaagaaaaactaacatgcaacaaaatcgaatttctaccttcgttggaaatggtagatgtatgaactcactctccactgaaattatcgataatgctcttc |
2720112 |
T |
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| Q |
101 |
cacctctgtatcaaattacacaaacaaattcaa |
133 |
Q |
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| T |
2720113 |
cacctctgtatcaaattacacaaacaaattcaa |
2720145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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