View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10786_7 (Length: 452)
Name: NF10786_7
Description: NF10786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10786_7 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 53125717 - 53126157
Alignment:
| Q |
1 |
gtgaaggcatgtacattacaaacctttagctgaaggtacatcttgaggtttcatggcatggaagagaataacttcctgtaaccaacccaaaaggaaccag |
100 |
Q |
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| T |
53125717 |
gtgaaggcatgtacattacaaacctttagctgaaggtacatcttgaggtttcatggcatggaagagaataacttcctgtaaccaacccaaaaggaaccaa |
53125816 |
T |
|
| Q |
101 |
aaatgtaagaatttacaaaaacaaatttaacatgcagagaatgagaatgagaaagagcaagaacctttatgttctgtgaatcagtcagtaacatcgtcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53125817 |
aaatgtaagaatttacaaaaacaaatttaacatgcagagaatgagaatgagaaagagcaagaacctttatgttctgtgaatcagtcagtaacatcgtcaa |
53125916 |
T |
|
| Q |
201 |
cctatcaatacccataccccaaccgccagttggtggcataccatactccaaagcagcgcaaaattcctcgtctaaggccatcgcttcatcatcccccgat |
300 |
Q |
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| T |
53125917 |
cctatcaatacccataccccaaccgccagttggtggcataccatactccaaagcagtgcaaaattcctcgtctaaggccatcgcttcatcatcccccgat |
53126016 |
T |
|
| Q |
301 |
tgccgatcctaatatgcagg-aaacgtagaccaattagttattcttattgcattaaagaaaatgtaatttgtatgcattattaggattaaaataattcta |
399 |
Q |
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| T |
53126017 |
tgccgatcctaatatgcaggaaaacgtagaccaattagttattcttattgcattaaagaaaatgtaatttgtatgcattattaggattaaaataattcta |
53126116 |
T |
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| Q |
400 |
cgcgtgcactcaatcacatcacatctcagcgtatagatatt |
440 |
Q |
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| T |
53126117 |
cgcgtgcactcaatcacatcacatctcagcatatagatatt |
53126157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 53107933 - 53108239
Alignment:
| Q |
7 |
gcatgtacattacaaacctttagctgaaggtacatcttgaggtttcatggcatggaagagaataacttcctgtaaccaacccaaaaggaaccagaaatgt |
106 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| | ||| | |
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| T |
53107933 |
gcatgtacaatacaaacctttagttgaaggtacatcttgaggtttcatggcagggaagagaagaacttcctgt----aacccaaaaggaagaaagaatat |
53108028 |
T |
|
| Q |
107 |
aagaatttacaaaaacaaatttaacatgcagagaatgagaatgagaaagagcaagaacctttatgttctgtgaatcagtcagtaacatcgtcaacctatc |
206 |
Q |
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||||||||| ||||||||||| |||||||| || ||||||||| |||||||||||| || ||||||||||||||||||| ||| ||||||| ||| |
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| T |
53108029 |
aagaatttagaaaaacaaattaaacatgca------gaaaatgagaaaaagcaagaaccttgatattctgtgaatcagtcagtatcattgtcaaccgatc |
53108122 |
T |
|
| Q |
207 |
aatacccataccccaaccgccagttggtggcataccatactccaaagcagcgcaaaattcctcgtctaaggccatcgcttcatcatcccccgattgccga |
306 |
Q |
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||| |||| || |||||| |||||||| |||| ||||||||||| ||||| ||||| | || || |||||||| || |||||||| || ||||| ||| |
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| T |
53108123 |
aatgcccaaacaccaaccaccagttggcggcaaaccatactccagagcagtacaaaaaccttcatccaaggccattgcctcatcatcgcctgattgtcga |
53108222 |
T |
|
| Q |
307 |
tcctaatatgcaggaaa |
323 |
Q |
| |
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|||| | ||||| |||| |
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| T |
53108223 |
tcctgacatgcacgaaa |
53108239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 162 - 310
Target Start/End: Complemental strand, 15841631 - 15841483
Alignment:
| Q |
162 |
aacctttatgttctgtgaatcagtcagtaacatcgtcaacctatcaatacccataccccaaccgccagttggtggcataccatactccaaagcagcgcaa |
261 |
Q |
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|||||| || || ||||||||||||| |||||| ||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||||| | |||| |
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| T |
15841631 |
aaccttgatattttgtgaatcagtcaataacatagtcaaccgatcaatacccaaaccccaaccagcagttggtggcaaaccatactccaaagccgtgcaa |
15841532 |
T |
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| Q |
262 |
aattcctcgtctaaggccatcgcttcatcatcccccgattgccgatcct |
310 |
Q |
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| T |
15841531 |
aatgtttcgtccaaggccattgcttcgtcgtcacctgattgccgatcct |
15841483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 26161285 - 26161193
Alignment:
| Q |
161 |
gaacctttatgttctgtgaatcagtcagtaacatcgtcaacctatcaatacccataccccaaccgccagttggtggcataccatactccaaag |
253 |
Q |
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||||||| || || ||||||||||||| |||||| ||||| ||||||||||| ||| ||||| ||||||||||||||||||| |||||||| |
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| T |
26161285 |
gaaccttaatattttgtgaatcagtcaataacatggtcaagtaatcaatacccaaaccacaaccaccagttggtggcataccattctccaaag |
26161193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 15841753 - 15841706
Alignment:
| Q |
38 |
acatcttgaggtttcatggcatggaagagaataacttcctgtaaccaa |
85 |
Q |
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||||||||||||||||||||| ||||||||| ||| |||||||||||| |
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| T |
15841753 |
acatcttgaggtttcatggcagggaagagaagaacctcctgtaaccaa |
15841706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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