View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10786_9 (Length: 407)
Name: NF10786_9
Description: NF10786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10786_9 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 41557089 - 41556722
Alignment:
| Q |
14 |
aaatgtgccaatctttgagttccatcaccggttggagaagaatgtttcttaatctggtttaataattggtttgcatttgaaatatcattacaagaaatgg |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557089 |
aaatatgccaatctttgagttccatcaccggttggagaagaatgtttcttaatctggtttaataattggtttgcatttgaaatatcattacaagaaatgg |
41556990 |
T |
|
| Q |
114 |
attgtgcacatagcatcaatagtgtcctcaaatccacaacttcctcataacttctctttctcctagaaccatagaatctgtttgataattcttcattctg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
41556989 |
attgtgcacatagcatcaatagtgtcctcaaatccacaacttcctcataacttctctttctcctaaaaccaccgaatctgtttgataattcttcattctg |
41556890 |
T |
|
| Q |
214 |
ctgaaagcttgtgttttgatgcggcccttttgtgactttagtaccaagaagtaatttatcaaataattctgataactcgctgttatcatctactttcatt |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41556889 |
ctggaagcttgtgttttgatgcggcccttttgtgactttagtaccaagaagtaatttatcaaataattctgataactcgctgttatcatctactttcact |
41556790 |
T |
|
| Q |
314 |
tgttctgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagc |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41556789 |
tgttctgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagc |
41556722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 41589749 - 41589367
Alignment:
| Q |
14 |
aaatgtgccaatctttgagttccatcaccggttggagaagaatgtttcttaatctggtttaataattggtttgcatttgaaatatcattacaagaaatgg |
113 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41589749 |
aaatgtgccaatctttgagtaccatcacctgttggagaagaatgtttcttaatctggtttaataattggttagcatttgaaatatcattacaagaaatgg |
41589650 |
T |
|
| Q |
114 |
attgtgcacatagcatcaatagtgtcctcaaatccacaacttcctcataacttctctttctcctagaaccatagaatctgtttgataattcttcattctg |
213 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41589649 |
attgtgcacatagcatcaatagtgtcctcaaatccacaacttcctcataacttctttgtctcctagaaccatagaatctgtttgataattcttcattctg |
41589550 |
T |
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| Q |
214 |
ctgaaagcttgtgttttgatgcggcccttttgtgactttagtaccaaga---agtaatttatcaaataattctgataactcgctgttatcatctactttc |
310 |
Q |
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||| ||||||||||||||| | ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| | | |||||||||| | | |
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| T |
41589549 |
ctggaagcttgtgttttgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcaccgctatcatctacatac |
41589450 |
T |
|
| Q |
311 |
atttgttc------------tgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagc |
381 |
Q |
| |
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| |||||| ||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
41589449 |
acttgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttttctgtctgaagtacctcatgagaaagagc |
41589367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 41570801 - 41570424
Alignment:
| Q |
14 |
aaatgtgccaatctttgagttccatcaccggttggagaagaatgtttcttaatctggtttaataattggtttgcatttgaaatatcattacaagaaatgg |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41570801 |
aaatgtgccaatctttgagtaccatcacctgttggagaagaatgtttcttaatctggtttaataattggttagcatttgaaatatcattacaagaaatgg |
41570702 |
T |
|
| Q |
114 |
attgtgcacatagcatcaatagtgtcctcaaatccacaacttcctcataacttctctttctcctagaaccatagaatctgtttgataattcttcattctg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||| |
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| T |
41570701 |
attgtgcacatagcatcaatagtgtcctcaaatccacaacttcctcataacttctctgtctcctataaccatagaatctgtttgataattcataattctg |
41570602 |
T |
|
| Q |
214 |
ctgaaagcttgtgttttgatgcggcccttttgtgactttagtaccaag---aagtaatttatcaaataattctgataactcgctgttatcatctactttc |
310 |
Q |
| |
|
||||||||||||||||||| | ||||||||| | |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
41570601 |
ctgaaagcttgtgttttgaagtggccctttttttactttagtaccaaggactagtaatttatcaaataattctggtaactcgctgttatcatctacatat |
41570502 |
T |
|
| Q |
311 |
atttgttc------------tgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaa |
376 |
Q |
| |
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| |||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41570501 |
acttgttctgactcattttgtgacacattgagaaaatgctcttcttcaaagttttctgtcttaatcacctcatgagaa |
41570424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 41583220 - 41582838
Alignment:
| Q |
14 |
aaatgtgccaatctttgagttccatcaccggttggagaagaatgtttcttaatctggtttaataattggtttgcatttgaaatatcattacaagaaatgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41583220 |
aaatgtgccaatctttgagttccatcaccggttggagaagaatgtttcttaatctggtttaataattgatttgcatttgaaatatcattacaagaaatgg |
41583121 |
T |
|
| Q |
114 |
attgtgcacatagcatcaatagtgtcctcaaatccacaacttcctcataacttctctttctcctagaaccatagaatctgtttgataattcttcattctg |
213 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41583120 |
attgtgctcacagcatcaatagtgtcctcaaatccacaacttcctcataacttctttgtctcctagaaccatagaatctgtttgataattcttcattctg |
41583021 |
T |
|
| Q |
214 |
ctgaaagcttgtgttttgatgcggcccttttgtgactttagtaccaaga---agtaatttatcaaataattctgataactcgctgttatcatctactttc |
310 |
Q |
| |
|
|||||||||||||||| || | |||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| |||| | | |
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| T |
41583020 |
ctgaaagcttgtgtttcgaagtagcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcactggtatcacctacatgc |
41582921 |
T |
|
| Q |
311 |
atttgttc------------tgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagc |
381 |
Q |
| |
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| |||||| ||||||||| ||||||||||||||||||||||| ||||||| || | | |||||||||||||| |
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| T |
41582920 |
aattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagc |
41582838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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