View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10786_low_2 (Length: 246)
Name: NF10786_low_2
Description: NF10786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10786_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 38392348 - 38392582
Alignment:
| Q |
12 |
atgaaattagaaacaaaatctattttttatatgcaatttaactttttctaataactatgatttatccacatgaatgtttagaatcatgatggttcacaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38392348 |
atgaaattagaaacaaaatctattttttatatgcaatttaactttttctaataactttgatttatccacatgaatgtttagaatcatgatggttcacaac |
38392447 |
T |
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| Q |
112 |
gattatgataaaatcaccgttaatctaaacatgcactaaagaaataattcttctaaaaattatgtcaattggatttacttacaatcatttgtggaaggaa |
211 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38392448 |
gattctgataaaatcaccgttaatctaaacttgcactaaagaaataattcttctaaaaattatgtcaattggatttacttacaatcatttctggaaggaa |
38392547 |
T |
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| Q |
212 |
ttgagggagtctcaaaggtttgagaagaaaactac |
246 |
Q |
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| T |
38392548 |
ttgagggagtctcaatggtttgagaagaaaactac |
38392582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 38400924 - 38401158
Alignment:
| Q |
12 |
atgaaattagaaacaaaatctattttttatatgcaatttaactttttctaataactatgatttatccacatgaatgtttagaatcatgatggttcacaac |
111 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||| || ||||||||||||| ||||| |||||||| |
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| T |
38400924 |
atgaaattagaaacaaaatctattcttcgtatgcaatttaactttttctaacaactacaatttatccatataaatgtttagaatcgtgatgtttcacaac |
38401023 |
T |
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| Q |
112 |
gattatgataaaatcaccgttaatctaaacatgcactaaagaaataattcttctaaaaattatgtcaattggatttacttacaatcatttgtggaaggaa |
211 |
Q |
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| T |
38401024 |
gattctgataaaatcactgttaatctaaacatgcactaaagaaataattcttctaaaaattatgtcaattggatttacttacaatcatttgtggaaggaa |
38401123 |
T |
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| Q |
212 |
ttgagggagtctcaaaggtttgagaagaaaactac |
246 |
Q |
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| T |
38401124 |
ttgagggagtctcaaaggtttgagaagaaaactac |
38401158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 38383490 - 38383725
Alignment:
| Q |
12 |
atgaaattagaaacaaaatctattttttatatgcaatttaactttttctaataactatgatttatccacatgaatgtttagaatcatgatggttcacaac |
111 |
Q |
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||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||| | |
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| T |
38383490 |
atgaaattagaaacaaaatatattctttgaatgcaatttaactttttcttataactacgatttatccacatgaatatttagaatcatgatggttaacatc |
38383589 |
T |
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| Q |
112 |
gattatgataaaatcaccgttaatctaaacatgcactaaag-aaataattcttctaaaaattatgtcaattggatttacttacaatcatttgtggaagga |
210 |
Q |
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| T |
38383590 |
gattatgataaactctttgttaatcaaaacatgcactaaagaaaagattttttaaaaaaaatatgtcaattggatttacttacaatcatttgtggaagga |
38383689 |
T |
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| Q |
211 |
attgagggagtctcaaaggtttgagaagaaaactac |
246 |
Q |
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| T |
38383690 |
attgagggagtctcaaaggtttgagaaggaaactac |
38383725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 37844348 - 37844203
Alignment:
| Q |
99 |
gatggttcacaacgattatgataaaatcaccgttaatctaaacatgcactaaagaaataattcttcta-aaaattatgtcaattggatttacttacaatc |
197 |
Q |
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|||||||||| | |||| ||||| | ||||||| |||||||||||||||||||||||| |||||| | ||||| ||||||||||||| ||||||||||| |
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| T |
37844348 |
gatggttcacgatgattttgatagattcaccgtgaatctaaacatgcactaaagaaattattctttttgaaaatcatgtcaattggatatacttacaatc |
37844249 |
T |
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| Q |
198 |
atttgtggaaggaattgagggagtctcaaaggtttgagaagaaaac |
243 |
Q |
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| T |
37844248 |
atttgtgaaagaaattgagggagtctcaaagatttgagaagaaaac |
37844203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 37838915 - 37838824
Alignment:
| Q |
12 |
atgaaattagaaacaaaatctattttttatatgcaatttaacttttt-ctaataactatgatttatccacatgaatgtttagaatcatgatg |
102 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37838915 |
atgaaattagaaacaaaatctattttttgtatgcaatttaacttttttctaataactatgatttattcacatgaatgtttagaatcatgatg |
37838824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 37838750 - 37838639
Alignment:
| Q |
133 |
aatctaaacatgcactaaagaaataattcttctaaaaattatgtcaattggatttacttacaatcatttgtggaaggaattgagggagtctcaaaggttt |
232 |
Q |
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|||||||||||||| |||| |||| ||| || |||||| ||||| |||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
37838750 |
aatctaaacatgcattaaaaaaattatttttttaaaaagtatgtaaattggatatacttacaatcatttgtgaaaggaatttagggagtctcaaaggttt |
37838651 |
T |
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| Q |
233 |
gagaagaaaact |
244 |
Q |
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|||||| ||||| |
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| T |
37838650 |
gagaaggaaact |
37838639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 37844481 - 37844392
Alignment:
| Q |
12 |
atgaaattagaaacaaaatctattttttatatgcaatttaactttttctaataactatgatttatccacatgaatgtttagaatcatgatgg |
103 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
37844481 |
atgatattagaaacaaaatctattttctatatgcaatttaactttatctaataactacgatttatccacatgaatgtt--gaatcatgatgg |
37844392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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