View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_high_12 (Length: 240)
Name: NF10787_high_12
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36755315 - 36755534
Alignment:
| Q |
1 |
caaaagaagcaaaagaaacctctagtactattcaacagagtcatccattagaagcagagctttcaaatctattcaaaacttctcaaggaagacttatgcg |
100 |
Q |
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| T |
36755315 |
caaaagaagcaaaagaaacctctagtactattcaacatagtcatccattagaagcaaagctttcaaatctattcaaaacttctcaaggaagacttatgcg |
36755414 |
T |
|
| Q |
101 |
ctgacaatttttcaacaacgattctattattttcacttataaaaagaaccatgagcagtttaaaaaagagagagacttcacgtttgaaaacagtgccaaa |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36755415 |
ctggcaatttttcaacaacgattctattattttcacttataaaaagaaccatgagcagtttaaaaaagagagagacttcacgtttaaaaacagtgccaaa |
36755514 |
T |
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| Q |
201 |
actttgataaattatatagc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
36755515 |
actttgataaattatatagc |
36755534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18114727 - 18114692
Alignment:
| Q |
1 |
caaaagaagcaaaagaaacctctagtactattcaac |
36 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
18114727 |
caaaagaagcaaaagaaacctctagtactattcaac |
18114692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 28458495 - 28458541
Alignment:
| Q |
21 |
tctagtactattcaacagagtcatccattagaagcagagctttcaaa |
67 |
Q |
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|||||||| |||||||||| | |||||||||| |||||||||||||| |
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| T |
28458495 |
tctagtacaattcaacagaattatccattagaggcagagctttcaaa |
28458541 |
T |
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