View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_high_13 (Length: 229)
Name: NF10787_high_13
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 29276020 - 29276214
Alignment:
| Q |
14 |
agagattccatgtgagtgggccggtgaggggaatagcagtgttcaaagtggttcaactgctgaaccatagatagatgaatcaaagtcacatctctccttc |
113 |
Q |
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| T |
29276020 |
agagattccatgtgagtggg----tgaggggaatagcagtgttcaaagtggtccaactgctgaaccatagacagatgaaccaaagtcacatctctccttc |
29276115 |
T |
|
| Q |
114 |
attattgattcagtatttctatacatgtttcttcccaatcacacctaatttctccaataatatatcaatataagatgggacatgtctataccgtataaa |
212 |
Q |
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|| |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29276116 |
atcattgattcagtattcctatacatgtttctgcccaatcacacccaatttctccaataatatatcaatataagatgggacatgtctataccgtataaa |
29276214 |
T |
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Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 55858572 - 55858378
Alignment:
| Q |
14 |
agagattccatgtgagtgggccggtgaggggaatagcagtgttcaaagtggttcaactgctgaaccatagatagatgaatcaaagtcacatctctccttc |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||||| |
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| T |
55858572 |
agagattccatgtgagt----aggtgaggggaatagcagtgttcaaagtggtccaactgcttaaccatagacagatgaaccaaagtcacatctctccttc |
55858477 |
T |
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| Q |
114 |
attattgattcagtatttctatacatgtttcttcccaatcacacctaatttctccaataatatatcaatataagatgggacatgtctataccgtataaa |
212 |
Q |
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|| |||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55858476 |
atcattgattcagtattcctatacatgtttctgcccaatcacacccaatttcttcaataatatatcaatataagatgggacatgtctataccgtataaa |
55858378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 31502965 - 31502764
Alignment:
| Q |
8 |
agaagcagagattccatgtgagtgggccggtgaggggaatagcagtgttcaaagtggttcaactgctgaaccatagatagatgaatcaaagtcacatctc |
107 |
Q |
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|||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||||||| |||||| |
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| T |
31502965 |
agaatcagagattccatgtgagtggg---gtgaagggaatagcagtgttcaaagtggtccaactactgaaccctagatagaggaatcaaagtcccatctc |
31502869 |
T |
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| Q |
108 |
tccttcattattgattcagtatttctatacatgtttcttcccaatcacacctaatttctccaataatatatcaatataagatgggacatgtctataccgt |
207 |
Q |
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|||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
31502868 |
tccttcatcattgattcagtattcctatacatgtttctgcccaatcaaacctaatttctccaataatatatcaatataggatgggacatgtctacaccgt |
31502769 |
T |
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| Q |
208 |
ataaa |
212 |
Q |
| |
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||||| |
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| T |
31502768 |
ataaa |
31502764 |
T |
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