View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_high_5 (Length: 288)
Name: NF10787_high_5
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_high_5 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 27526556 - 27526832
Alignment:
| Q |
1 |
tttcgagggccgacctgaatgaagtttatgccgagcatgcaagacctggtggctggaatggttagaacttcatttgtttaacaattttttgtgaaagaat |
100 |
Q |
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| T |
27526556 |
tttcgagggccgacctgaatgaagtttatgccgagcatgcaagacctggtggctggaatggttagaacttcatttgtttaacaattttttgtgaaagaat |
27526655 |
T |
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| Q |
101 |
tgagtttgcatcttgatttcatgatataatttatgactcaagatattcattaaacattttaactcaacagatcctgacatgcttgaggttggaaatggag |
200 |
Q |
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| T |
27526656 |
tgagtttgcatcttgatttcatgatataatttatgactcaagatattcattaaatattttaactcaacagatcctgacatgcttgaggttggaaatggag |
27526755 |
T |
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| Q |
201 |
ggatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattctcttgtcttcat |
277 |
Q |
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| T |
27526756 |
ggatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattctcttgtcttcat |
27526832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 27532209 - 27532476
Alignment:
| Q |
1 |
tttcgagggccgacctgaatgaagtttatgccgagcatgcaagacctggtggctggaatggttagaacttcatttgtttaacaattttttgtgaaaga-a |
99 |
Q |
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|||| ||||| ||| |||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| | |
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| T |
27532209 |
tttcaagggctgacatgaatgaagtttatgctgagcttgcaagacctggtggttggaatggttagaatttcatttgtttaacaactttttgtgaaagaca |
27532308 |
T |
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| Q |
100 |
ttgagtttgcatcttgatttcatgatataatttatgactcaagatattcattaaacattttaactcaacagatcctgacatgcttgaggttggaaatgga |
199 |
Q |
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| T |
27532309 |
tcgagtttgcatattgatttcatgatacaatttatgagtcgatttattcattaaacattctaactcgacagatcctgatatgcttgaggttggaaatgga |
27532408 |
T |
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| Q |
200 |
gggatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattctc |
267 |
Q |
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| T |
27532409 |
gggatgacaaaaaatgagtatatcgttcacttcagtttgtgggccatttcaaaggttcgattattctc |
27532476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 20606 - 20712
Alignment:
| Q |
176 |
gacatgcttgagg-ttggaaatggagggatgac--aaaaaatgaatatattgttca-cttcagtttgtgggcc-atttcaaaggttctatcattctcttg |
270 |
Q |
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||||||||||||| |||||||||| ||| ||| |||||| | |||||||||||| |||||||||||||||| || ||||||||||||||||||||| | |
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| T |
20606 |
gacatgcttgagggttggaaatggggggcagaccaaaaaaagggatatattgttcaacttcagtttgtgggcccatgtcaaaggttctatcattctctgg |
20705 |
T |
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| Q |
271 |
tcttcat |
277 |
Q |
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||||||| |
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| T |
20706 |
tcttcat |
20712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 24883685 - 24883727
Alignment:
| Q |
167 |
acagatcctgacatgcttgaggttggaaatggagggatgacaa |
209 |
Q |
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| T |
24883685 |
acagatcctgacatgcttgaagttggaaatggaggtatgacaa |
24883727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 32590259 - 32590219
Alignment:
| Q |
169 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
209 |
Q |
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| T |
32590259 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32590219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 32600707 - 32600667
Alignment:
| Q |
169 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
209 |
Q |
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| T |
32600707 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32600667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 34593853 - 34593815
Alignment:
| Q |
169 |
agatcctgacatgcttgaggttggaaatggagggatgac |
207 |
Q |
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| T |
34593853 |
agatcctgacatgcttgaggttgggaatggaggcatgac |
34593815 |
T |
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