View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10787_high_7 (Length: 258)

Name: NF10787_high_7
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10787_high_7
NF10787_high_7
[»] chr1 (9 HSPs)
chr1 (1-239)||(36754794-36755032)
chr1 (43-155)||(20816895-20817006)
chr1 (62-159)||(17048058-17048155)
chr1 (72-156)||(34488588-34488672)
chr1 (65-159)||(11833671-11833765)
chr1 (41-155)||(22669024-22669138)
chr1 (89-140)||(10751556-10751607)
chr1 (46-140)||(1634920-1635014)
chr1 (118-170)||(13258054-13258106)
[»] chr8 (15 HSPs)
chr8 (9-159)||(19342158-19342308)
chr8 (9-159)||(19371656-19371806)
chr8 (41-147)||(12843488-12843594)
chr8 (45-159)||(22881699-22881813)
chr8 (66-157)||(25809562-25809653)
chr8 (6-116)||(10650312-10650422)
chr8 (57-159)||(20707146-20707248)
chr8 (65-156)||(28458049-28458138)
chr8 (89-140)||(24502368-24502419)
chr8 (51-128)||(17872012-17872089)
chr8 (83-156)||(15610249-15610322)
chr8 (39-159)||(5346072-5346191)
chr8 (99-155)||(10516419-10516475)
chr8 (83-147)||(15748418-15748482)
chr8 (87-159)||(15753132-15753204)
[»] chr3 (7 HSPs)
chr3 (1-205)||(23528299-23528503)
chr3 (51-155)||(4596840-4596944)
chr3 (57-140)||(9796540-9796623)
chr3 (89-162)||(9828934-9829006)
chr3 (83-151)||(2906526-2906594)
chr3 (51-159)||(4698583-4698691)
chr3 (57-133)||(17034132-17034208)
[»] chr2 (13 HSPs)
chr2 (10-201)||(16748014-16748203)
chr2 (45-159)||(24386337-24386451)
chr2 (45-140)||(27483804-27483899)
chr2 (41-138)||(21538453-21538550)
chr2 (36-134)||(12061203-12061302)
chr2 (89-159)||(13896937-13897006)
chr2 (89-159)||(14037554-14037623)
chr2 (65-155)||(18115082-18115172)
chr2 (41-127)||(22108280-22108366)
chr2 (70-156)||(35511828-35511914)
chr2 (46-79)||(24109118-24109151)
chr2 (51-144)||(31851192-31851285)
chr2 (57-133)||(22311211-22311287)
[»] chr7 (16 HSPs)
chr7 (9-159)||(11739526-11739676)
chr7 (42-154)||(39199758-39199872)
chr7 (31-148)||(23662258-23662375)
chr7 (84-151)||(3316119-3316186)
chr7 (41-156)||(6414881-6414996)
chr7 (41-151)||(23183444-23183554)
chr7 (86-151)||(7681513-7681578)
chr7 (31-148)||(23655457-23655574)
chr7 (86-151)||(7666254-7666319)
chr7 (67-124)||(19650724-19650781)
chr7 (39-159)||(7144564-7144683)
chr7 (41-148)||(32561883-32561988)
chr7 (65-159)||(1675008-1675102)
chr7 (55-133)||(1783369-1783447)
chr7 (63-144)||(4122590-4122671)
chr7 (70-159)||(39227386-39227475)
[»] chr4 (11 HSPs)
chr4 (1-156)||(35150106-35150261)
chr4 (51-159)||(24715650-24715758)
chr4 (69-159)||(12285764-12285854)
chr4 (30-147)||(9736410-9736527)
chr4 (51-126)||(9883032-9883107)
chr4 (6-125)||(19601508-19601627)
chr4 (88-159)||(20748672-20748743)
chr4 (65-151)||(7221262-7221347)
chr4 (41-112)||(23692967-23693038)
chr4 (110-151)||(16300692-16300733)
chr4 (119-151)||(7224279-7224311)
[»] chr5 (7 HSPs)
chr5 (96-162)||(24558953-24559019)
chr5 (96-162)||(24599985-24600051)
chr5 (69-159)||(11848263-11848353)
chr5 (39-125)||(18807449-18807535)
chr5 (8-109)||(17771693-17771794)
chr5 (41-110)||(16687129-16687198)
chr5 (103-147)||(16686436-16686480)
[»] chr6 (3 HSPs)
chr6 (65-159)||(14761285-14761378)
chr6 (9-126)||(12869801-12869918)
chr6 (6-79)||(33546579-33546652)
[»] scaffold0466 (1 HSPs)
scaffold0466 (51-159)||(4317-4425)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 36755032 - 36754794
Alignment:
Q  1 ttcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755032 ttcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgtt 36754933  T
Q  101 ctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcctccttttcgatggttacaaacttatgtatt 200  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  36754932 ctttcatacattgttatcatcaaaactttagagatattgttctaaaacccactttggttaaaaaatcccccccttttcgatggttacaaacttatgtatt 36754833  T
Q  201 ttaaaaaagttgctaaatgttgtctagcatggaattcat 239  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  36754832 ttaaaaaagttgatgaatgttgtctagcatggaattcat 36754794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 20817006 - 20816895
Alignment:
Q  43 tcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttc 142  Q
    ||||||| |||||||||| |||||||||||| ||||| | ||| ||||| |||||||||||||||||||| ||| ||| ||||| ||||||| |||||||    
T  20817006 tcagaatttaattttatggtcctgcacacttcaacacacatta-agtattcaattgttctttcatacattgttatcattaaaacattagagacattgttc 20816908  T
Q  143 taaaacccacttt 155  Q
    |||||||||||||    
T  20816907 taaaacccacttt 20816895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 17048155 - 17048058
Alignment:
Q  62 tcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    |||||||||||||||||| | ||| | |||||||||||| ||||||||||| ||| || |||||| ||||| ||||||||||||||| ||||||||||    
T  17048155 tcctgcacacttgaacacacattaaaatatccaattgttatttcatacatttttatcaacaaaaccttagatatattgttctaaaactcactttggtt 17048058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 34488588 - 34488672
Alignment:
Q  72 ttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 156  Q
    |||||||| | |||||||||| |||||||||||||||| |||||| |||||||||| |||| | |||||||||||||||||||||    
T  34488588 ttgaacacacattagagtatcaaattgttctttcataccttattatcatcaaaactctagatacattgttctaaaacccactttg 34488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 11833671 - 11833765
Alignment:
Q  65 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    |||||| |||||||| | ||||||| || |||| || |||||||| |||||| ||| ||||||||||||| |||||| |||||| ||||||||||    
T  11833671 tgcacaattgaacacacattagagtttcaaattattttttcatacgttattatcattaaaactttagagacattgttttaaaactcactttggtt 11833765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 22669138 - 22669024
Alignment:
Q  41 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    ||||| ||| ||||| |||| |||||||||||||||||    |||||||| | |||| |||||||||||||| ||| ||| ||||| ||  | | ||| |    
T  22669138 agtcaaaatttaattatatggtcctgcacacttgaacaaatattagagtaccaaattcttctttcatacattgttatcataaaaaccttgaaaacattat 22669039  T
Q  141 tctaaaacccacttt 155  Q
    |||||||||||||||    
T  22669038 tctaaaacccacttt 22669024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 10751556 - 10751607
Alignment:
Q  89 tatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    |||||||||||||||| |||| || ||| ||||||||||||||||| |||||    
T  10751556 tatccaattgttctttaatactttgttatcatcaaaactttagagacattgt 10751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 1635014 - 1634920
Alignment:
Q  46 gaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    |||| ||||| |||| ||||||||||||||||||   ||||  |||||||||||||  | |||| |||||| |||||||||| | |||| |||||    
T  1635014 gaatttaattctatgctcctgcacacttgaacacatattagcctatccaattgttcacttataccttattatcatcaaaactctggagacattgt 1634920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 13258106 - 13258054
Alignment:
Q  118 catcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcc 170  Q
    |||||||||| |||||| |||||||||||  ||||||||||| || |||||||    
T  13258106 catcaaaactctagagacattgttctaaagtccactttggttcaacaatctcc 13258054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 19342308 - 19342158
Alignment:
Q  9 ttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcata 108  Q
    ||||| ||| |||||||||||||||| |||||||| ||||| |||||||||| | |||||||||||||||| | || | |||||||||||||||||||||    
T  19342308 ttggtatttcagaaccaacaagttgacttcagagttagaatttaattttatggtactgcacacttgaacacacatttgtgtatccaattgttctttcata 19342209  T
Q  109 cattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    |||| ||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  19342208 cattgttatcatcaaaactttagagacattgttctaaaactcactttggtt 19342158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 19371806 - 19371656
Alignment:
Q  9 ttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcata 108  Q
    ||||||||| | |||||||| ||||| |||||||| ||||| ||||||| || | |||||||||||||||| | || | |||||||||||||||||||||    
T  19371806 ttggtgtttcataaccaacaggttgacttcagagttagaatttaattttgtggtactgcacacttgaacacacatttgtgtatccaattgttctttcata 19371707  T
Q  109 cattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    |||| ||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  19371706 cattgttatcatcaaaactttagagacattgttctaaaactcactttggtt 19371656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 12843488 - 12843594
Alignment:
Q  41 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    ||||||||| ||||| |||| |||||||||||||||||| | |||| |||||||||| |||||||||||||||||| |||||||||| |||||| | |||    
T  12843488 agtcagaatttaattatatggtcctgcacacttgaacacacattagcgtatccaattattctttcatacattattatcatcaaaactctagagacactgt 12843587  T
Q  141 tctaaaa 147  Q
    |||||||    
T  12843588 tctaaaa 12843594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 22881699 - 22881813
Alignment:
Q  45 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 144  Q
    ||||| ||||| |||| || | |||||| |||||| | |||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||    
T  22881699 agaatttaattatatggtcatacacactagaacacacattagagtatccaattgttctttcatatattattatcatcaaaaccttagagacattgttcta 22881798  T
Q  145 aaacccactttggtt 159  Q
    |||| ||||||||||    
T  22881799 aaactcactttggtt 22881813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 25809562 - 25809653
Alignment:
Q  66 gcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttgg 157  Q
    ||||||| |||||| | ||||||||||||||| |||||| |||| || ||| |||||||||  || ||| ||||||||||||||||||||||    
T  25809562 gcacactcgaacacacattagagtatccaattattcttttatactttgttaacatcaaaaccatatagacattgttctaaaacccactttgg 25809653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 10650312 - 10650422
Alignment:
Q  6 agcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttc 105  Q
    |||||||||||| | |||||||||||||| |||| ||||| ||| |||||||||| | | |||||  ||||||| | |||||| ||||||| ||||||||    
T  10650312 agcttggtgtttcaaaaccaacaagttgacttcaaagtcataatttaattttatggttcggcacatatgaacacacattagagcatccaatcgttctttc 10650411  T
Q  106 atacattatta 116  Q
    ||  |||||||    
T  10650412 attgattatta 10650422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 20707146 - 20707248
Alignment:
Q  57 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 156  Q
    |||| |||| ||||||||||||| | |||||||||| ||||||||||||| ||||| ||| |||  |||| ||| ||| |||||| |||||| |||||||    
T  20707146 tatggtcctacacacttgaacacacattagagtatctaattgttctttcaaacattgttatcatttaaaccttatagacattgttttaaaactcactttg 20707245  T
Q  157 gtt 159  Q
    |||    
T  20707246 gtt 20707248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 28458138 - 28458049
Alignment:
Q  65 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 156  Q
    ||||||||| ||||| | ||||||||  ||||| |||||||| ||||| ||||||||||| | ||| || ||||||||||||| ||||||||    
T  28458138 tgcacacttaaacacacattagagta--caattattctttcacacattgttaccatcaaacccttataggtattgttctaaaatccactttg 28458049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 24502419 - 24502368
Alignment:
Q  89 tatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    |||||||||||||||| |||| |||||| |||||||||||||||| ||||||    
T  24502419 tatccaattgttctttaatactttattatcatcaaaactttagaggtattgt 24502368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 17872089 - 17872012
Alignment:
Q  51 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactt 128  Q
    ||||| |||||||||||| ||||||||||   ||||  |||| ||||||||||| ||||||| ||| |||||||||||    
T  17872089 taattctatgatcctgcatacttgaacacaaattagcatatcaaattgttcttttatacattgttatcatcaaaactt 17872012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 15610249 - 15610322
Alignment:
Q  83 ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 156  Q
    |||||||| | | |||||||| || ||||| |||  |||||||| ||| ||| |||||||||||||||||||||    
T  15610249 ttagagtaacaagttgttcttacacacatttttattatcaaaaccttatagacattgttctaaaacccactttg 15610322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 5346072 - 5346191
Alignment:
Q  39 agagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatatt 138  Q
    ||||||||||| |||||||||| |   ||| |||||||||| ||||||  |||||||||| || || |||||||  ||  ||||| ||||  ||||||||    
T  5346072 agagtcagaatttaattttatggttacgcatacttgaacacacgttagcatatccaattgctcctttatacattgatataatcaagacttccgagatatt 5346171  T
Q  139 gttctaaaacccactttggtt 159  Q
    |||| ||||| || |||||||    
T  5346172 gttc-aaaactcattttggtt 5346191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 10516475 - 10516419
Alignment:
Q  99 ttctttcatacattattaccatcaaaactttagagatattgttctaaaacccacttt 155  Q
    |||||||||||||| ||| ||||||||  ||| | | ||||||||||||||||||||    
T  10516475 ttctttcatacattgttatcatcaaaatcttataaacattgttctaaaacccacttt 10516419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 15748418 - 15748482
Alignment:
Q  83 ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaa 147  Q
    ||||||||  |||||||||||||||||||| ||| ||| ||||  |||||||  |||||||||||    
T  15748418 ttagagtaggcaattgttctttcatacattgttatcataaaaatcttagagactttgttctaaaa 15748482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 15753132 - 15753204
Alignment:
Q  87 agtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    |||| |||||||||||| |||||||| ||| ||| ||||  |||||||  ||||||||||| ||| |||||||    
T  15753132 agtacccaattgttcttacatacattgttatcataaaaatcttagagactttgttctaaaatccaatttggtt 15753204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 23528503 - 23528299
Alignment:
Q  1 ttcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgtt 100  Q
    |||| |||||||||| | | |||||||||||||| |||||| ||| ||| |||||||||| ||||||||| |||| ||    ||| |||| |||||||||    
T  23528503 ttcagagcttggtgtatcaaaaccaacaagttgatttcagattcaaaatttaattttatggtcctgcaca-ttgagcaaaaattatagtacccaattgtt 23528405  T
Q  101 ctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcctcc-ttttcgatggttacaaacttatgtat 199  Q
    |||||| ||||| ||| ||||||||| ||||||| ||||||||||||| |||||||||| || |||||| ||| |||| |||| | | ||||||||||||    
T  23528404 ctttcagacattgttatcatcaaaaccttagagacattgttctaaaactcactttggttcaacaatctcttccttttttgatgatgagaaacttatgtat 23528305  T
Q  200 tttaaa 205  Q
     |||||    
T  23528304 cttaaa 23528299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 4596944 - 4596840
Alignment:
Q  51 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 150  Q
    |||||||||| |  ||||||| ||||||| | ||||||||||||| | |||||| ||| ||||| | |||  |||||||| ||| ||| |||||||||||    
T  4596944 taattttatggttttgcacacctgaacacacattagagtatccaaatattcttttatatattatcatcatttaaactttaaagacattattctaaaaccc 4596845  T
Q  151 acttt 155  Q
    |||||    
T  4596844 acttt 4596840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 9796540 - 9796623
Alignment:
Q  57 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    ||||||||||||||||||||||    |||   |||||||||||||||| |||| |||||| ||||||||||| ||||| |||||    
T  9796540 tatgatcctgcacacttgaacatatattaacatatccaattgttctttaatactttattatcatcaaaacttcagagaaattgt 9796623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 9829006 - 9828934
Alignment:
Q  89 tatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaa 162  Q
    |||| ||||||||||| ||||||| ||| |||||||||||||| || ||||||| ||||| || ||||||||||    
T  9829006 tatctaattgttcttttatacattgttatcatcaaaactttagggacattgttc-aaaactcattttggttaaa 9828934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 2906526 - 2906594
Alignment:
Q  83 ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 151  Q
    ||||||||||||||| |||||  ||||||| ||| ||||||||||||||||| ||| || |||| ||||    
T  2906526 ttagagtatccaattattcttctatacattgttatcatcaaaactttagagacattattgtaaatccca 2906594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 4698691 - 4698583
Alignment:
Q  51 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 150  Q
    |||||||||| |  ||||||||||||||  | ||||||||| |||||||||||| | ||| |  || ||| || |||||| ||| ||| |||||||| ||    
T  4698691 taattttatggttttgcacacttgaacatacattagagtattcaattgttcttttacacaatgctatcattaatactttaaagacattattctaaaatcc 4698592  T
Q  151 actttggtt 159  Q
    || ||||||    
T  4698591 accttggtt 4698583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 17034208 - 17034132
Alignment:
Q  57 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagag 133  Q
    ||||||| |||||||||||||| |  |||   |||||||||||||||  ||||||| ||| ||||||||||| ||||    
T  17034208 tatgatcgtgcacacttgaacatgtattaacatatccaattgttcttcaatacattgttatcatcaaaacttcagag 17034132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 16748203 - 16748014
Alignment:
Q  10 tggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatac 109  Q
    |||||||| |||||||| || |||| |||| ||||| ||| | |||||||| | || |||| |||||||| | ||||||||| ||| |||||||||||||    
T  16748203 tggtgtttcagaaccaataaattgatttca-agtcaaaatttgattttatggttctacacatttgaacacacattagagtattcaactgttctttcatac 16748105  T
Q  110 attattaccatcaaaactttagagatattgttctaaaacccactttggttaaaaaatctcctccttttcgatggttacaaacttatgtattt 201  Q
    ||||||| ||||||||  ||||| | |||||||||||||||| ||||||| |  ||| ||||||||||  ||| | ||||||||||| ||||    
T  16748104 attattatcatcaaaatcttagaaacattgttctaaaaccca-tttggttcatcaatttcctccttttttatgataacaaacttatggattt 16748014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 24386337 - 24386451
Alignment:
Q  45 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 144  Q
    ||||| ||||| |||| || ||||||||||||||| | ||| | ||   ||||||||||||||||||||||| ||| ||||| |||| ||||||||||||    
T  24386337 agaatttaattctatggtcatgcacacttgaacacacattaaattactaaattgttctttcatacattattatcataaaaaccttagggatattgttcta 24386436  T
Q  145 aaacccactttggtt 159  Q
    |||||||||||||||    
T  24386437 aaacccactttggtt 24386451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 27483899 - 27483804
Alignment:
Q  45 agaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    ||||| |||||||||| |||||||||||||||||| | |||   |||| ||||||||||||| || || |||  |||||||||| ||||| |||||    
T  27483899 agaatttaattttatggtcctgcacacttgaacacacattaatatatcaaattgttctttcaaactttgttatgatcaaaacttcagagacattgt 27483804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 21538550 - 21538453
Alignment:
Q  41 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatatt 138  Q
    ||||||||| ||||| |||| || | | || |||||||| |  ||||||| | ||||||||||||||||||| ||| ||||||||||| | |||||||    
T  21538550 agtcagaatttaattatatggtctttcccaattgaacacacaatagagtaccaaattgttctttcatacattgttatcatcaaaacttaaaagatatt 21538453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 12061203 - 12061302
Alignment:
Q  36 ttcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttc-tttcatacattattaccatcaaaactttagaga 134  Q
    |||||||||||||  ||| |||||||| |||||||||| ||| | | |||   |||| |||||||| |||||||| |||||| ||||||||||| |||||    
T  12061203 ttcagagtcagaaattaagtttatgattctgcacacttaaactcacattaacatatctaattgttcttttcatactttattatcatcaaaacttcagaga 12061302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 13896937 - 13897006
Alignment:
Q  89 tatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    ||||||||| |||||||| || || ||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  13896937 tatccaatttttctttcaaactttgttatcatcaaaacttaagagacattgtt-taaaacccattttggtt 13897006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 14037554 - 14037623
Alignment:
Q  89 tatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    ||||||||| |||||||| || || ||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  14037554 tatccaatttttctttcaaactttgttatcatcaaaacttaagagacattgtt-taaaacccattttggtt 14037623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 18115082 - 18115172
Alignment:
Q  65 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccacttt 155  Q
    ||||||||||| ||| | |||||||| |||||| |||||| |||| || ||| ||||||||| ||||| | |||||  |||| ||||||||    
T  18115082 tgcacacttgagcacacattagagtacccaattattcttttatacgttgttatcatcaaaaccttagaaaaattgtgttaaaccccacttt 18115172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 22108366 - 22108280
Alignment:
Q  41 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaact 127  Q
    ||||||| | ||||| ||||||| ||||||||||||||| | ||| | |||  ||||| ||||||| | ||||||| ||||||||||    
T  22108366 agtcagattttaattatatgatcatgcacacttgaacacacattataatataaaattgctctttcacatattattatcatcaaaact 22108280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 35511914 - 35511828
Alignment:
Q  70 acttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 156  Q
    |||||||||  | |||||||||| |||| |||||| ||||||  ||| ||||||||| ||| | | ||||||||||||| |||||||    
T  35511914 acttgaacatacattagagtatcaaattattcttttatacatcgttatcatcaaaacattaaaaacattgttctaaaactcactttg 35511828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 24109151 - 24109118
Alignment:
Q  46 gaatataattttatgatcctgcacacttgaacac 79  Q
    |||| |||||||||||||||||||||||||||||    
T  24109151 gaatttaattttatgatcctgcacacttgaacac 24109118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 31851285 - 31851192
Alignment:
Q  51 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 144  Q
    ||||| ||||||| ||||||||||||||  | ||||| |||| ||||||||||  ||||| | ||  || |||||| ||||| |||||||||||    
T  31851285 taattatatgatcatgcacacttgaacaaactttagaatatctaattgttcttctatacactgttgtcaccaaaaccttagaaatattgttcta 31851192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 22311287 - 22311211
Alignment:
Q  57 tatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagag 133  Q
    ||||||||||||||||||||||    ||||  |||||||||||||||  |||| || ||| ||||||||| ||||||    
T  22311287 tatgatcctgcacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttagag 22311211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 11739676 - 11739526
Alignment:
Q  9 ttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcata 108  Q
    ||||||||| ||||||||||||| || ||| |||||||||| ||||| |||| | |||||| |||||| ||  ||||||||| | |||||||||||||||    
T  11739676 ttggtgtttcagaaccaacaagtagacttctgagtcagaatttaattctatggtactgcacgcttgaatacatgttagagtacctaattgttctttcata 11739577  T
Q  109 cattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
      || ||| ||||||||| ||||| | |||||||||||||||  |||||||    
T  11739576 tgttgttatcatcaaaacattagaaacattgttctaaaaccctttttggtt 11739526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 39199872 - 39199758
Alignment:
Q  42 gtcagaatataattttatgatcctgcacacttgaacacgcg--ttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattg 139  Q
    |||||||| ||||| |||| || |||| |||| |||||||   |||||||||| |||||||| |||||||||| |||  |||||||| |||||||||||     
T  39199872 gtcagaatttaattatatggtcatgcatacttaaacacgcacattagagtatcaaattgttcattcatacattgttattatcaaaaccttagagatatta 39199773  T
Q  140 ttctaaaacccactt 154  Q
    ||||||||| |||||    
T  39199772 ttctaaaactcactt 39199758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 23662258 - 23662375
Alignment:
Q  31 ttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaacttta 130  Q
    |||| |||||||||||||| ||||| |||| ||||||| |||  ||||    |||| ||||||||||||||||| ||||||| | | ||||||||| |||    
T  23662258 ttgacttcagagtcagaatgtaattctatgttcctgcatactacaacaaaatttagggtatccaattgttcttttatacattgtcagcatcaaaacctta 23662357  T
Q  131 gagatattgttctaaaac 148  Q
    |||| ||| |||||||||    
T  23662358 gagacattattctaaaac 23662375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 3316119 - 3316186
Alignment:
Q  84 tagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 151  Q
    ||||||| ||||||||||||  ||||||| ||| ||||||||| |||||||| |||||||||||||||    
T  3316119 tagagtacccaattgttcttctatacatttttatcatcaaaacattagagattttgttctaaaaccca 3316186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 6414881 - 6414996
Alignment:
Q  41 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    ||||| ||| ||||| |||  |||||||||||||||  |   |||||||| |||||| |||||||||||||| ||| ||| |||| |||| ||| |||||    
T  6414881 agtcataatttaattatatcgtcctgcacacttgaatgcatattagagtacccaattattctttcatacattgttatcataaaaaatttaaagacattgt 6414980  T
Q  141 tctaaaacccactttg 156  Q
    |||| |||||||||||    
T  6414981 tctataacccactttg 6414996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 23183444 - 23183554
Alignment:
Q  41 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    ||||| ||| ||||| |||| || ||||||||||||||| | ||||||| ||   ||||||||||||| ||||||| ||||| ||||| ||||| |||||    
T  23183444 agtcaaaatttaattatatggtcatgcacacttgaacacacattagagtgtcaggttgttctttcataaattattatcatcagaacttaagagacattgt 23183543  T
Q  141 tctaaaaccca 151  Q
     | ||||||||    
T  23183544 ccaaaaaccca 23183554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 7681578 - 7681513
Alignment:
Q  86 gagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 151  Q
    ||||| ||| ||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  7681578 gagtacccagttgttcttctatacattgttatcatcaaaaccttagagatattgttctaaaaccca 7681513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 23655457 - 23655574
Alignment:
Q  31 ttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaacttta 130  Q
    |||| |||||||||||||| ||||| |||| |||| |||||  |||||  | |||||||| |||||| |||||  ||||||  ||| ||||||||| |||    
T  23655457 ttgacttcagagtcagaatttaattatatggtcctacacaccagaacaaactttagagtacccaatttttcttatatacatagttaacatcaaaacctta 23655556  T
Q  131 gagatattgttctaaaac 148  Q
    |||| ||| |||||||||    
T  23655557 gagacattattctaaaac 23655574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 7666319 - 7666254
Alignment:
Q  86 gagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 151  Q
    ||||| ||| ||||||||  ||||||| ||| ||||||||  ||||||||||||||||||||||||    
T  7666319 gagtacccagttgttcttctatacattgttatcatcaaaaacttagagatattgttctaaaaccca 7666254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 19650724 - 19650781
Alignment:
Q  67 cacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaa 124  Q
    ||||||||||||||| |||| ||| |||||| || ||||||||||||||| |||||||    
T  19650724 cacacttgaacacgcattagggtacccaatttttatttcatacattattatcatcaaa 19650781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 7144683 - 7144564
Alignment:
Q  39 agagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatatt 138  Q
    ||||||||||| ||||| |||| | ||||| |||||||||| | ||    |||||||||||||||||||| ||| ||  ||||||||||| ||||  |||    
T  7144683 agagtcagaatttaattatatggttctgcatacttgaacacacattgtcatatccaattgttctttcatatattgttctcatcaaaacttcagagtcatt 7144584  T
Q  139 gttctaaaacccactttggtt 159  Q
    ||| |||||| || |||||||    
T  7144583 gtt-taaaactcattttggtt 7144564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 32561988 - 32561883
Alignment:
Q  41 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgt 140  Q
    ||||||||| ||||| |||| |||| || |||| ||||  | |||||||||  |||| || |||||||||| |||| ||||||||| ||||||| |||||    
T  32561988 agtcagaatttaattatatggtcctacatacttaaacatacattagagtattaaattatt-tttcatacat-attatcatcaaaaccttagagacattgt 32561891  T
Q  141 tctaaaac 148  Q
    ||||||||    
T  32561890 tctaaaac 32561883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 1675102 - 1675008
Alignment:
Q  65 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    ||||||||||||||  |  |||| |||||||||||||||  ||||||||||| ||||||||  ||||    ||| ||||||||| ||||||||||    
T  1675102 tgcacacttgaacaaacaatagaatatccaattgttcttctatacattattatcatcaaaatcttagtagcattattctaaaactcactttggtt 1675008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 1783369 - 1783447
Alignment:
Q  55 tttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagag 133  Q
    |||||||||||||||||||||||||   ||| | |||||||||||||||  | || || ||| |||||||||| |||||    
T  1783369 tttatgatcctgcacacttgaacacatattaaattatccaattgttcttcaaaactttgttatcatcaaaactctagag 1783447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 4122671 - 4122590
Alignment:
Q  63 cctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttcta 144  Q
    |||||||||| |||||| |||||  |||  ||||||||||||  |||||| ||| ||| ||||  |||||||||||||||||    
T  4122671 cctgcacactggaacacacgttattgtactcaattgttcttttctacattgttatcattaaaatcttagagatattgttcta 4122590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 39227475 - 39227386
Alignment:
Q  70 acttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    |||||||||| | |||||||||| |  |||||||||||| ||| ||| | ||||||| ||||| | ||| |||||||| | |||||||||    
T  39227475 acttgaacacactttagagtatcaatctgttctttcatatattgttatcttcaaaaccttagaaacattattctaaaatcgactttggtt 39227386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 35150261 - 35150106
Alignment:
Q  1 ttcaaagcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgtt 100  Q
    |||| |||||| ||||| ||||||||||| |||| ||   ||||||||| || ||||||| |  ||||| ||||||||| |  || ||||  ||||||||    
T  35150261 ttcagagcttgatgtttcagaaccaacaacttgactttgaagtcagaatttagttttatggtattgcacccttgaacacacactaaagtactcaattgtt 35150162  T
Q  101 ctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttg 156  Q
     ||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||    
T  35150161 atttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttg 35150106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 24715758 - 24715650
Alignment:
Q  51 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 150  Q
    ||||| |||| || |||||| |||||||| | |||||||| ||||||||||||||||| ||| ||| ||||||||  ||| ||| |||| | ||||||||    
T  24715758 taattgtatggtcttgcacaattgaacacacattagagtacccaattgttctttcataaattgttatcatcaaaatcttaaagacattgatgtaaaaccc 24715659  T
Q  151 actttggtt 159  Q
    |||||||||    
T  24715658 actttggtt 24715650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 12285854 - 12285764
Alignment:
Q  69 cacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    |||||||| || | |||||||| |||||||||||||| |||||| ||| |||||||| |||| ||| |||||| ||||| |||||||||||    
T  12285854 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaatccactttggtt 12285764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 9736410 - 9736527
Alignment:
Q  30 gttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaacttt 129  Q
    |||||||||||||| ||||  ||||| |||| |||||  | ||||||||  | ||||  || | ||||||||||||||||||| ||| |||||||||| |    
T  9736410 gttgaattcagagttagaacttaattctatggtcctgaccccttgaacaaactttaggctacctaattgttctttcatacatttttatcatcaaaactgt 9736509  T
Q  130 agagatattgttctaaaa 147  Q
    ||||| ||||||||||||    
T  9736510 agagacattgttctaaaa 9736527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 9883107 - 9883032
Alignment:
Q  51 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaac 126  Q
    |||||||||| |  ||||||||| |||||   ||||||||| |||||||||||||||||||| |||||||||||||    
T  9883107 taattttatggtagtgcacacttaaacacaaattagagtattcaattgttctttcatacatttttaccatcaaaac 9883032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 19601627 - 19601508
Alignment:
Q  6 agcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttc 105  Q
    |||||| ||| |||||||||| || |||| || | | ||||||| ||||| |||||||||||| ||||||| ||  |||| | ||  ||||| ||| |||    
T  19601627 agcttgatgtattagaaccaaaaacttgattttaaattcagaatttaattatatgatcctgcatacttgaatacatgttacaatactcaattattcattc 19601528  T
Q  106 atacattattaccatcaaaa 125  Q
    ||||||||||| ||||||||    
T  19601527 atacattattatcatcaaaa 19601508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 20748672 - 20748743
Alignment:
Q  88 gtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    ||||||||||||||||||||||||| ||| ||||  | | ||| ||| |||||||||| |||||||||||||    
T  20748672 gtatccaattgttctttcatacattgttatcatcgtatccttatagacattgttctaatacccactttggtt 20748743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 7221262 - 7221347
Alignment:
Q  65 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccca 151  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||| ||| ||| ||||||||| ||||| ||||| || |||||||||    
T  7221262 tgcacacttgaacaaactttagagtatccaattgttattttata-atttttatcatcaaaaccttagaaatattattttaaaaccca 7221347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 23692967 - 23693038
Alignment:
Q  41 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacatt 112  Q
    ||||||||| ||||| |||| || ||| | ||||||||| | |||||||| ||||||||| |||||||||||    
T  23692967 agtcagaatttaattatatggtcttgctcgcttgaacacacattagagtacccaattgttatttcatacatt 23693038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 16300733 - 16300692
Alignment:
Q  110 attattaccatcaaaactttagagatattgttctaaaaccca 151  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||    
T  16300733 attattatcatcaaaactttaaagacattgttctaaaaccca 16300692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 7224279 - 7224311
Alignment:
Q  119 atcaaaactttagagatattgttctaaaaccca 151  Q
    |||||||| ||||||||||||||||||||||||    
T  7224279 atcaaaaccttagagatattgttctaaaaccca 7224311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 24559019 - 24558953
Alignment:
Q  96 ttgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaa 162  Q
    ||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||    
T  24559019 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaa 24558953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 24600051 - 24599985
Alignment:
Q  96 ttgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggttaaa 162  Q
    ||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||    
T  24600051 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaa 24599985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 11848353 - 11848263
Alignment:
Q  69 cacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    ||||||||||| | ||| | || | ||||||||||||||||| | ||| ||||||||| ||||||| |||||| |||||||||||||||||    
T  11848353 cacttgaacacacattataataccaaattgttctttcatacaatgttatcatcaaaaccttagagacattgttgtaaaacccactttggtt 11848263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 18807449 - 18807535
Alignment:
Q  39 agagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaa 125  Q
    ||||| ||||| ||||||||||||||| ||||||||||||| | ||||  |||||||||||| ||| |||  || ||| ||||||||    
T  18807449 agagttagaatttaattttatgatccttcacacttgaacacaccttagcatatccaattgttttttgatattttgttatcatcaaaa 18807535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 17771794 - 17771693
Alignment:
Q  8 cttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcat 107  Q
    |||||||||| | |||||| ||||||| |||| ||||| ||| ||||| ||| | | |  ||||||||| || | |||||||||| ||||||||||||||    
T  17771794 cttggtgtttcaaaaccaataagttgacttcaaagtcataatttaattatataaacttagacacttgaatacacattagagtatctaattgttctttcat 17771695  T
Q  108 ac 109  Q
    ||    
T  17771694 ac 17771693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 16687198 - 16687129
Alignment:
Q  41 agtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcataca 110  Q
    ||||| ||| ||||| |||| || ||||||||| ||||| | |||||||| |||||| ||||||||||||    
T  16687198 agtcataatttaattctatggtcttgcacacttaaacacacattagagtacccaattattctttcataca 16687129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 16686480 - 16686436
Alignment:
Q  103 ttcatacattattaccatcaaaactttagagatattgttctaaaa 147  Q
    |||||| ||||||| ||||||||||||| |||||||||| |||||    
T  16686480 ttcatatattattatcatcaaaactttaaagatattgttttaaaa 16686436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 14761285 - 14761378
Alignment:
Q  65 tgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaacccactttggtt 159  Q
    ||||||||||||||| ||||| |||| | ||||| | ||||||||||| ||| |||||||| |||||||| |||||||||||||||||| |||||    
T  14761285 tgcacacttgaacacacgttatagtaccaaattgct-tttcatacattgttatcatcaaaattttagagacattgttctaaaacccactatggtt 14761378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 12869918 - 12869801
Alignment:
Q  9 ttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcata 108  Q
    ||||||| | ||||||||||||||||  ||||| ||||||| ||||| |||| |||||||||  ||||||| | || ||||| | | || ||||||||||    
T  12869918 ttggtgtctcagaaccaacaagttgacatcagattcagaatttaattatatggtcctgcacatctgaacactcatttgagtacctagttattctttcata 12869819  T
Q  109 cattattaccatcaaaac 126  Q
    |||| |||  ||||||||    
T  12869818 cattgttataatcaaaac 12869801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 33546579 - 33546652
Alignment:
Q  6 agcttggtgttttagaaccaacaagttgaattcagagtcagaatataattttatgatcctgcacacttgaacac 79  Q
    |||||||| ||| |||||||||||||||| |||||| ||| ||| |||||  ||| ||||||| ||||||||||    
T  33546579 agcttggtatttcagaaccaacaagttgacttcagaatcaaaatttaattcaatggtcctgcagacttgaacac 33546652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 4425 - 4317
Alignment:
Q  51 taattttatgatcctgcacacttgaacacgcgttagagtatccaattgttctttcatacattattaccatcaaaactttagagatattgttctaaaaccc 150  Q
    ||||| |||| ||||||||||| |||||  | |||||||||||||||||| ||| |||| || ||| ||||| ||   || ||| |||||||||||||||    
T  4425 taattatatggtcctgcacactcgaacatacattagagtatccaattgttattttatactttgttaacatcagaatcatatagacattgttctaaaaccc 4326  T
Q  151 actttggtt 159  Q
    |||||||||    
T  4325 actttggtt 4317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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