View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10787_low_10 (Length: 362)

Name: NF10787_low_10
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10787_low_10
NF10787_low_10
[»] chr8 (5 HSPs)
chr8 (1-356)||(5722190-5722545)
chr8 (4-243)||(5669929-5670168)
chr8 (5-206)||(5691807-5692008)
chr8 (239-356)||(5670314-5670431)
chr8 (228-356)||(5692077-5692205)
[»] chr3 (1 HSPs)
chr3 (7-204)||(12137393-12137590)
[»] chr4 (2 HSPs)
chr4 (7-203)||(164674-164870)
chr4 (7-204)||(103713-103910)
[»] chr7 (1 HSPs)
chr7 (7-204)||(13052616-13052813)
[»] scaffold0013 (2 HSPs)
scaffold0013 (7-204)||(92398-92595)
scaffold0013 (281-356)||(92678-92753)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 5722190 - 5722545
Alignment:
Q  1 gatcactaccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5722190 gatcactaccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaacc 5722289  T
Q  101 agcttgtttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  5722290 agcttgtttaatggccaatgagtcaaaagtggctccatgaatatgtataaactatcccataatagatcttgtatcaaaggatggggatagtaaagatctt 5722389  T
Q  201 cctgcannnnnnnaacagtaataatatattataaagaggaaatgtgcacacacaaattgtggttaatcaaagataatacccctcacctttgcacatagat 300  Q
    ||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5722390 cctgcatttttttaacggtaataatatattataaagaggaaatgtgcacacacaaattgtggttaatcaaagataatacccctcacctttgcacataggt 5722489  T
Q  301 ggcgtactttttgccaattaactttttcataatgttctgtaaggagttcttctctc 356  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5722490 gacgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctc 5722545  T

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Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 5669929 - 5670168
Alignment:
Q  4 cactaccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5669929 cactaccttttccacacacccaatggttatgtatcgactattcttatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagc 5670028  T
Q  104 ttgtttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5670029 ttgtttaatggccaatgagtcaaaagtggctccatgaatatgtataaactatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcct 5670128  T
Q  204 gcannnnnnnaacagtaataatatattataaagaggaaat 243  Q
    |||       ||||||||||||||||||||||||||||||    
T  5670129 gcatttttttaacagtaataatatattataaagaggaaat 5670168  T

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Target: chr8; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 5691807 - 5692008
Alignment:
Q  5 actaccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagct 104  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5691807 actaccttttccacacatccaatagttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaatcagct 5691906  T
Q  105 tgtttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctg 204  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5691907 tgtttaacggccaatgagtcaaaagtggctccatgaatatgtataaactatcccatattagatcttgtatcaaaggatggggatagtaaagatcttcctg 5692006  T
Q  205 ca 206  Q
    ||    
T  5692007 ca 5692008  T

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Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 5670314 - 5670431
Alignment:
Q  239 gaaatgtgcacacacaaattgtggttaatcaaagataatacccctcacctttgcacatagatggcgtactttttgccaattaactttttcataatgttct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5670314 gaaatgtgcacacacaaattgtggttaatcaaagataatacccctcacctttgcacatagatggcgtactttttgccaattaactttttcataatgttct 5670413  T
Q  339 gtaaggagttcttctctc 356  Q
    ||||||||||||||||||    
T  5670414 gtaaggagttcttctctc 5670431  T

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Target: chr8; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 5692077 - 5692205
Alignment:
Q  228 attataaagaggaaatgtgcacacacaaattgtggttaatcaaagataatacccctcacctttgcacatagatggcgtactttttgccaattaacttttt 327  Q
    ||||||||||||| ||||  ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5692077 attataaagaggatatgtaaacacacacattgtggttaatcagagataatactcctcacctttgcacatagatggcgtactttttgccaattaacttttt 5692176  T
Q  328 cataatgttctgtaaggagttcttctctc 356  Q
    ||||| |||||||||||||||||||||||    
T  5692177 cataaggttctgtaaggagttcttctctc 5692205  T

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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 12137393 - 12137590
Alignment:
Q  7 taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg 106  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || ||||||||||||| || ||||    
T  12137393 taccttttccacgcatccaatggttatgtatcgactattctcatcttcatagtggatatgcttcattgttacttgaagggctttttctctaatcaacttg 12137492  T
Q  107 tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctg 204  Q
    || || |||||| |||| | || ||| || |||||||||||||||| |||||| || ||||||||||  || ||||| ||||||||||| ||||||||    
T  12137493 ttgaaaggccaacgagttagaattggttcaatgaatatgtataaactatcccacataagatcttgtacaaatggatgaggatagtaaaggtcttcctg 12137590  T

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Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 164870 - 164674
Alignment:
Q  7 taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg 106  Q
    ||||||||||||| || |||||||||||||||||||||||||||| || |||||||| || |||||||  ||||  |||||| ||| ||| |||||||||    
T  164870 taccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagagctctttttctgaccagcttg 164771  T
Q  107 tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcct 203  Q
    || || |||||| |||| | ||| |||||  ||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  164770 ttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct 164674  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 103910 - 103713
Alignment:
Q  7 taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg 106  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||||| |||||||  ||||  || ||| ||| ||| |||||||||    
T  103910 taccttttccacacacccaatggttaggtatcgactgttctcatcctcgtagtggatatgcttcattgtaacttcaagggctctttttctgaccagcttg 103811  T
Q  107 tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctg 204  Q
    || || |||||  |||| | ||| |||||  | ||||||||||| | ||||||||| |||||||||||||||||||| |||||||||| |||||||||    
T  103810 ttgaaaggccagcgagtgagaagcggctcggtaaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctg 103713  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 13052813 - 13052616
Alignment:
Q  7 taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg 106  Q
    ||||||||| |||  ||| |||||||||||||||||||||||||| || ||||||||||| ||||||  |||||| || ||||||||||||| ||  |||    
T  13052813 taccttttctacagcccccatggttatgtatcgactattctcatcctcgtagtggatatgcttcattcttacttgaagggctttttctctaatcaatttg 13052714  T
Q  107 tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctg 204  Q
    || || |||||| |||| | |||||||||  ||||||| || || | ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  13052713 ttgaaaggccaacgagtgagaagtggctcggtgaatatatagaagctatcccatatcagatcttgtatcaaaggatgaggatagtaaagatcttcctg 13052616  T

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Target: scaffold0013 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 92398 - 92595
Alignment:
Q  7 taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg 106  Q
    |||||||||||||||  |||  ||||||||||||||||||||||| || ||||| ||||| |||||||||||||| || ||||||||||| |||| ||||    
T  92398 taccttttccacacatgcaacagttatgtatcgactattctcatcctcgtagtgaatatgcttcattgctacttgtagggctttttctctgaccaacttg 92497  T
Q  107 tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctg 204  Q
    || || |||||| |||| | |||||||||  | || | ||| || | ||||||||||| |||||||||||||||||| |||||||| | |||||||||    
T  92498 ttgaaaggccaacgagttagaagtggctcagtaaaaaggtaaaagctatcccatattaaatcttgtatcaaaggatgaggatagtagatatcttcctg 92595  T

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Target: scaffold0013; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 92678 - 92753
Alignment:
Q  281 cctcacctttgcacatagatggcgtactttttgccaattaactttttcataatgttctgtaaggagttcttctctc 356  Q
    |||||||||||||||||| |||||| |||||| ||| ||||||||  ||||| |||  ||| | ||||||||||||    
T  92678 cctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctc 92753  T

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