View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_low_12 (Length: 307)
Name: NF10787_low_12
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 34360796 - 34361075
Alignment:
| Q |
1 |
ccgccgcatacaatttctcaattgccgctatacaaagactgatcctgttaaacaattaagttaaccatgcatttcaaggtata-gctgttgaaattcatg |
99 |
Q |
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| T |
34360796 |
ccgccgcatacagtttctcaattcccgctatacaaagactgatcctgttaaacaattatgttaaccatgcatttcagggtataagctgttg--------- |
34360886 |
T |
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| Q |
100 |
tggcttgaacaatatggaggaggctttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcaacggatccnn |
199 |
Q |
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| T |
34360887 |
--gcttgaacaacatggaggagactttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcattggatcc-t |
34360983 |
T |
|
| Q |
200 |
nnnnnatagtttgaaactgagaagttgcaactcttctcttttcctatctctatgtatacaatgcatgtttacttagttctgttcaagatgct |
291 |
Q |
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| T |
34360984 |
tttttatagtttgaaagtgagaagttgcaactcttcccttttcctatctctatgtatacaatgcatgtttacttagctctgttcaagatgct |
34361075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 5584661 - 5584814
Alignment:
| Q |
86 |
tgttgaaattcatgtggcttgaacaatatggaggaggctttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcat |
185 |
Q |
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| T |
5584661 |
tgttgaaattcatgtggtaggaacaacatggaggagactttatcctattattttagtatgaaggcttgagcatcttacttttgtgaatgaagcacttcct |
5584760 |
T |
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| Q |
186 |
ttcaacggatccnnnnnnnatagtttgaaactgagaagttgcaactcttctcttttcct |
244 |
Q |
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| T |
5584761 |
t-----ggtacctttttttatagtttgaaagtgagaagttgcaactcttctcctttcct |
5584814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 25291386 - 25291522
Alignment:
| Q |
50 |
aaacaattaagttaaccatgcatttcaaggtatagctgttgaaattcatgtggcttgaacaatatggaggaggctttatcctattattttagtatggagg |
149 |
Q |
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||||||||| |||||| ||| |||||| ||||||||||||||||||||||| || |||||| ||||||||| ||| || ||| |||||||||||| ||| |
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| T |
25291386 |
aaacaattatgttaactatgtatttcatggtatagctgttgaaattcatgtagcaggaacaacatggaggagacttgattctactattttagtatgaagg |
25291485 |
T |
|
| Q |
150 |
cttgagcatcttacttttatgaatgaagtacttcatt |
186 |
Q |
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|||||| || ||||||| | |||||| |||||||| |
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| T |
25291486 |
cttgagtctcctacttttgttgatgaagcacttcatt |
25291522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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