View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_low_14 (Length: 262)
Name: NF10787_low_14
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 8324032 - 8324288
Alignment:
| Q |
6 |
agggggcaacttttgcgttattggatgtccaaaaagaaaaagttgttagttagttttttaatttcatccaaaccaaaatatcatttccaatctaaaccaa |
105 |
Q |
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| T |
8324032 |
agggggcaacttttgcgttattggatgtccaaaaagaaaaagttgttagttagttttttaatttcatccaaaccaaaatatcatttccaatctaaaccaa |
8324131 |
T |
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| Q |
106 |
taaaaccaaccaacccaagcattcaattcaacacatcatcatcttgaagtactttcatctccgatagtaacggaattccaacccagaaatctctaaaata |
205 |
Q |
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| T |
8324132 |
taaaaccaaccaacccaagcattcaattcaacacatcatcatcttgaagtactttcatctccgatagtaacggaattccaacccagaaatctctaaaata |
8324231 |
T |
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| Q |
206 |
ccctccaacttccccgactatgttgcagaaacccagacgccgttgcgaaggcacagc |
262 |
Q |
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| T |
8324232 |
ccctccaacttccccgactatgttgcagagacccagacgccgttgcgaaggcacagc |
8324288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 33626171 - 33626222
Alignment:
| Q |
31 |
tgtccaaaaagaaaaagttgttagttagttttttaatttcatccaaaccaaa |
82 |
Q |
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| T |
33626171 |
tgtccaaaaagaaaaacttgtttgttagtttttccatttcatccaaaccaaa |
33626222 |
T |
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