View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10787_low_16 (Length: 250)
Name: NF10787_low_16
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32164078 - 32164317
Alignment:
| Q |
1 |
tagaagttgttgttcattactctattatctccgtcgttgagatgctcaaaagcgcaatggccaaaaattaaacatagtcttatttcttgtgaattgtaac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32164078 |
tagaagttgttgttcattactttattacatccgtcgttgagatgctcaaaagcgcaatggccaaaaattaaacatagtcttatttcttgtgaattgtaac |
32164177 |
T |
|
| Q |
101 |
tcactaggcaaattattagaaatgagacattgcttaattttgaccattgtcctcaaaccatgttaagcgaccatggatgtgacacatggctcgtttcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32164178 |
tcactaggcaaattattagaaatgagacactgcttaattttgaccattgtcctcaaaccatgttaagtgaccatggatgtgacacatggctcgtttcttc |
32164277 |
T |
|
| Q |
201 |
tcccttgtcattttcgatttctctctaaggagaccctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32164278 |
tcccttgtcattttcgatttctctctaaggagaccctatg |
32164317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University