View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_low_18 (Length: 247)
Name: NF10787_low_18
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 22038807 - 22038594
Alignment:
| Q |
18 |
gatggttatcttttctcctatcagtgccaactggatgagatggaacgaaagtgggaggttgcccgcggagagttacagttgcaccattccccttactagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
22038807 |
gatggttatcttttctcctatcagtgccaactggatgagatggaacgaaagtgggaggtttcccgcggagagttacaattgcaccattccccttactagg |
22038708 |
T |
|
| Q |
118 |
tagcagtattttcactagggatacaatcacgattagcacaccagagcttgatgaaacgattgcccattacagcatccggtgccctcaaagaagcttcagc |
217 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |
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| T |
22038707 |
tagcagtattttcactagggaaacaatcacgattagcacaccagagcttgatgaaacgatttcccattacaacatctcgtgccctcaaagaagcttcagc |
22038608 |
T |
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| Q |
218 |
ctcttccctcttag |
231 |
Q |
| |
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||||||||| |||| |
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| T |
22038607 |
ctcttccctattag |
22038594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 22005651 - 22005861
Alignment:
| Q |
18 |
gatggttatcttttctcctatcagtgccaactggatgagatggaacgaaagtgggaggttgcccgcggagagttacagttgcaccattccccttactagg |
117 |
Q |
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||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||| |||||||||| ||||| | |
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| T |
22005651 |
gatggatatcttttctcctatcaatgccaattggatgagatggaacgaaagtgggtggttgcccgcggggagttacaattgtaccattcccc-tacta-g |
22005748 |
T |
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| Q |
118 |
tagcagtattttcactagggatacaatcacgattagcacaccagagcttgatgaaacgattgcccattacagcatccggtgccctcaaagaagcttcagc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||| ||| |||| |||||||| ||||||||| |
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| T |
22005749 |
tagcagtattttcactagggatacaatcacgattagcccacca-aggttgatgaaacggttgcccattacagaatcaggtgtcctcaaagcagcttcagc |
22005847 |
T |
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| Q |
218 |
ctcttccctcttag |
231 |
Q |
| |
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|||||||||||||| |
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| T |
22005848 |
ctcttccctcttag |
22005861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 22043421 - 22043307
Alignment:
| Q |
117 |
gtagcagtattttcactagggatacaatcacgattagcacaccagagcttgatgaaacgattgcccattacagcatccggtgccctcaaagaagcttcag |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| || |||| ||||||||||||||||| |
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| T |
22043421 |
gtagcattattttcactagggatacaatcacgattagcccaccagagcttgatgaaatgatttcccattacagcctctggtgtcctcaaagaagcttcag |
22043322 |
T |
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| Q |
217 |
cctcttccctcttag |
231 |
Q |
| |
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||||||||||||||| |
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| T |
22043321 |
cctcttccctcttag |
22043307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 22032321 - 22032418
Alignment:
| Q |
24 |
tatcttttctcctatcagtgccaactggatgagatggaacgaaagtgggaggttgcccgcggagagttacagttgcaccattccccttactaggtagc |
121 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||| ||||||||||| |
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| T |
22032321 |
tatcttttcttctatcagtgccaactagatgagatggaacgaaagtgggtggttgcctgcggggagttacaattgcaccattccctctactaggtagc |
22032418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 540126 - 539919
Alignment:
| Q |
18 |
gatggttatcttttctcctatcagtgccaactggatgagatggaacgaaagtgggaggttgcccgcggagagttacagttgcaccattccccttactagg |
117 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||| ||||| |
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| T |
540126 |
gatggatatcttttctcctatcagtggcaactggatgagatggaacgaaagtggg---ttgcccacggggagttacaattgcaccattcccactactac- |
540031 |
T |
|
| Q |
118 |
tagcagtattttcactagggatacaatcacgattagcacaccagagcttgatgaaacgattgcccattacagcatccggtgccctcaaagaagcttcagc |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | || ||| ||||| |
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| T |
540030 |
tactagtattttcactagggatacaatcacgattagcccaccacagcttgatgaaacgattgcccattacagcatcaggtgcccttagagcagcctcagc |
539931 |
T |
|
| Q |
218 |
ctcttccctctt |
229 |
Q |
| |
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|||||||||||| |
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|
| T |
539930 |
ctcttccctctt |
539919 |
T |
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