View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10787_low_2 (Length: 464)

Name: NF10787_low_2
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10787_low_2
NF10787_low_2
[»] chr3 (9 HSPs)
chr3 (165-438)||(2650287-2650562)
chr3 (165-441)||(2503606-2503885)
chr3 (18-133)||(2650594-2650709)
chr3 (176-293)||(7332455-7332572)
chr3 (314-432)||(2494377-2494495)
chr3 (315-415)||(7340030-7340131)
chr3 (339-420)||(2632248-2632331)
chr3 (165-247)||(2483978-2484060)
chr3 (314-421)||(2484123-2484231)
[»] chr5 (5 HSPs)
chr5 (203-292)||(20298415-20298504)
chr5 (203-292)||(20307874-20307963)
chr5 (203-292)||(20303468-20303557)
chr5 (83-121)||(24018970-24019008)
chr5 (83-125)||(31034326-31034368)
[»] chr7 (1 HSPs)
chr7 (93-126)||(46282708-46282741)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 165 - 438
Target Start/End: Complemental strand, 2650562 - 2650287
Alignment:
Q  165 gtatatacgactcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattat--ggaacgagacaacaaagataggagt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  2650562 gtatatacgactcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattatatggaacgagacaacaaagataggagt 2650463  T
Q  263 agaagattcattttcttagattttagaatccnnnnnnncttattgtttaacaggttttctttcaatattagttaaccttctagaaatgctagtttctagt 362  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2650462 agaagattcattttcttagattttagaatcctttttttcttattgtttaacaggttttctttcaatattagttaaccttctagaaatgctagtttctagt 2650363  T
Q  363 attgcaatggtttgactctcttgcatatgttggttaatttaaacttgtttcatatcatgctactttttggctaata 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2650362 attgcaatggtttgactctcttgcatatgttggttaatttaaacttgtttcatatcatgctactttttggctaata 2650287  T

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Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 165 - 441
Target Start/End: Original strand, 2503606 - 2503885
Alignment:
Q  165 gtatatacgactcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtag 264  Q
    |||||||| ||||||||||| ||||||||| || | | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  2503606 gtatatacaactcatagtaccgttgagttgtatctctacctaggacaatatgagtttggttgagtttaattatggaacgagacaacaaagataggaatag 2503705  T
Q  265 aagattcattttcttagattttagaatccnnnnnnncttattgtttaaca-ggttttctttcaatattagttaaccttctagaaatgctagtttctagta 363  Q
    |||||||||||||||||||||||||||||       |||||||||||| | |||||||||||||| ||| |||||||||| |||||||||||||||||||    
T  2503706 aagattcattttcttagattttagaatcctttttgtcttattgtttaagagggttttctttcaatgttaattaaccttcttgaaatgctagtttctagta 2503805  T
Q  364 ttgc--aatggtttgactctcttgcatatgttggttaatttaaacttgtttcatatcatgctactttttggctaataggt 441  Q
    ||||   |||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| || ||||||    
T  2503806 ttgctagatggtttgactctcttgcatctgttggttaatttaaacttgtttcatattgtgctactttttgactcataggt 2503885  T

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Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 2650709 - 2650594
Alignment:
Q  18 gtggggtggagtgggtcgtaggtttttccggtatatcggtacccattgtaattttctgtctgccacgagtgtttttgtgtcttgcatttactcgacaaga 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2650709 gtggggtggagtgggtcgtaggtttttccggtatatcagtacctattgtaattttctgtctgccacgagggtttttgtgtcttgcatttactcgacaaga 2650610  T
Q  118 ataaatttgctgtttc 133  Q
    |||||||| |||||||    
T  2650609 ataaattttctgtttc 2650594  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 7332572 - 7332455
Alignment:
Q  176 tcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtagaagattcattt 275  Q
    |||||||||||| ||||||||| | | |||||||||||||||||| ||||| |||||| ||||||||||||  |||||||||||||||||||||||||||    
T  7332572 tcatagtacagtcgagttgcatctctacttaggacaatatgagttgggttgagtttaactatggaacgagaagacaaagataggagtagaagattcattt 7332473  T
Q  276 tcttagattttagaatcc 293  Q
    || |||||||| ||||||    
T  7332472 tcgtagattttcgaatcc 7332455  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 432
Target Start/End: Original strand, 2494377 - 2494495
Alignment:
Q  314 aggttttctttcaatattagttaaccttctagaaatgctagtttctagtattgc--aatggtttgactctcttgcatatgttggttaatttaaacttgtt 411  Q
    ||||||||||||||||||| |||||||||||  |||| ||||||||||||||||   ||| |||||  ||||||||| |||||||||| || |  |||||    
T  2494377 aggttttctttcaatattaattaaccttctatcaatggtagtttctagtattgctagatgatttga--ctcttgcatttgttggttaacttgactttgtt 2494474  T
Q  412 tcatatcatgctactttttgg 432  Q
    |||||| |||||| |||||||    
T  2494475 tcatatgatgctagtttttgg 2494495  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 7340131 - 7340030
Alignment:
Q  315 ggttttctttcaatattagttaaccttct-agaaatgctagtttctagtattgcaa--tggtttgactctcttgcatatgttggttaatttaaacttgtt 411  Q
    ||||||||||||||||||  ||||||| | || |||||||||||  |||||||| |  || |||||||||||||| | |||||||||| || ||||||||    
T  7340131 ggttttctttcaatattaagtaacctttttagcaatgctagttt--agtattgctagatgatttgactctcttgcctctgttggttaacttgaacttgtt 7340034  T
Q  412 tcat 415  Q
    ||||    
T  7340033 tcat 7340030  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 420
Target Start/End: Original strand, 2632248 - 2632331
Alignment:
Q  339 cttctagaaatgctagtttctagtattgca--atggtttgactctcttgcatatgttggttaatttaaacttgtttcatatcat 420  Q
    ||||||||||||||||||||||| ||||||  ||| ||||||| |||||||| | ||||||  ||| ||||||  |||||||||    
T  2632248 cttctagaaatgctagtttctagaattgcaagatgatttgactttcttgcatctattggttggtttgaacttgaatcatatcat 2632331  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 2483978 - 2484060
Alignment:
Q  165 gtatatacgactcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattatggaacgagac 247  Q
    ||||||| | |||||||||||  |||||||||| |   ||||||| |||| |||||| |||||||||||| || |||||||||    
T  2483978 gtatatatggctcatagtacatgtgagttgcatctccacttaggataataagagtttcgttgggtttaatcatcgaacgagac 2484060  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 2484123 - 2484231
Alignment:
Q  314 aggttttctttcaatattagttaacc-ttctagaaatgctagtttctagtattgc--aatggtttgactctcttgcatatgttggttaatttaaacttgt 410  Q
    |||||||||||||||||||  ||||| |||||| ||||||||||  |||||||||   ||| ||||||| |||||| | |||||||| | |  |||||||    
T  2484123 aggttttctttcaatattaagtaacctttctagcaatgctagtt--tagtattgctagatgatttgactgtcttgcctctgttggtttactggaacttgt 2484220  T
Q  411 ttcatatcatg 421  Q
    ||||| |||||    
T  2484221 ttcatttcatg 2484231  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 292
Target Start/End: Original strand, 20298415 - 20298504
Alignment:
Q  203 cttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtagaagattcattttcttagattttagaatc 292  Q
    ||||||||||||| ||||||||||||||| ||| |||| ||||||     |||||| | || |||||||||||||||| |||||||||||    
T  20298415 cttaggacaatattagtttggttgggttttattgtggagcgagacccatgagatagaaataaaagattcattttcttaaattttagaatc 20298504  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 292
Target Start/End: Original strand, 20307874 - 20307963
Alignment:
Q  203 cttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtagaagattcattttcttagattttagaatc 292  Q
    ||||||||||||| ||||||||||||||| ||| |||| ||||||     |||||| | || |||||||||||||||| |||||||||||    
T  20307874 cttaggacaatattagtttggttgggttttattgtggagcgagacccatgagatagaaataaaagattcattttcttaaattttagaatc 20307963  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 292
Target Start/End: Original strand, 20303468 - 20303557
Alignment:
Q  203 cttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtagaagattcattttcttagattttagaatc 292  Q
    ||||||||||||| ||||||||||||||| ||| || | ||||||     |||||| | || |||||||||||||||| |||||||||||    
T  20303468 cttaggacaatattagtttggttgggttttattgtgcagcgagacccatgagatagaaataaaagattcattttcttaaattttagaatc 20303557  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 24018970 - 24019008
Alignment:
Q  83 cgagtgtttttgtgtcttgcatttactcgacaagaataa 121  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24018970 cgagtgtttatgcgtcttgcatttactcgacaagaataa 24019008  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 31034368 - 31034326
Alignment:
Q  83 cgagtgtttttgtgtcttgcatttactcgacaagaataaattt 125  Q
    ||||||||| || |||||||||||||||||| |||||||||||    
T  31034368 cgagtgtttatgcgtcttgcatttactcgacgagaataaattt 31034326  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 46282708 - 46282741
Alignment:
Q  93 tgtgtcttgcatttactcgacaagaataaatttg 126  Q
    ||||||||||||||||||||| ||||||||||||    
T  46282708 tgtgtcttgcatttactcgacgagaataaatttg 46282741  T

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