View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_low_25 (Length: 227)
Name: NF10787_low_25
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_25 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40739823 - 40740049
Alignment:
| Q |
1 |
ttagaagaagaatgagtgaatgaaaactatgtaaagtatccaatggagaagttgtgaaaacacttgatgaaatacacagtacaataacccctttatatag |
100 |
Q |
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| T |
40739823 |
ttagaagaagaatgagtgaatgaaaactatgtaaagtatccaatggagaagttgtgaaaacacttgatgaaatacacagtacaataacccctttatatag |
40739922 |
T |
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| Q |
101 |
acttgggtatggttacttgactaccaagttaactctatgattaagttaatctctaattaactcaatcttatcaaactaacttctaaccagtgtcatttgg |
200 |
Q |
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| T |
40739923 |
acttgggtatggttacttgactaccaagttaactctatgattaagttaatctctaattaactcaatcttatcaaactaacttctaaccagtgtcagctgg |
40740022 |
T |
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| Q |
201 |
ttagtaattgtgtaacctctaacaaac |
227 |
Q |
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| T |
40740023 |
ttagtaattgtctaaactctaacaaac |
40740049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 55212345 - 55212270
Alignment:
| Q |
109 |
atggttacttgactaccaagttaactctatgattaagttaatctctaattaactcaatcttatcaaactaacttcta |
185 |
Q |
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| T |
55212345 |
atggttacttgactaccaagtaaaccatatgatt-tgctaatctctaactaactcatccttatcaaaccaacttcta |
55212270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 38163170 - 38163116
Alignment:
| Q |
108 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaattaact |
162 |
Q |
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| T |
38163170 |
tatggttacttgactaccaagtaaaccctatgatcaagttaatttctaattaact |
38163116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 22311081 - 22311161
Alignment:
| Q |
108 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaat----taactcaatcttatcaaactaacttct |
184 |
Q |
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| T |
22311081 |
tatggttactcgactatcaagtaaactttatgatcaagttaatatctaatcaactaactcaatcttattaaactaacttct |
22311161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 38163249 - 38163190
Alignment:
| Q |
42 |
aatggagaagttgtgaaaacacttgatgaaatacacagtacaataacccctttatataga |
101 |
Q |
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| T |
38163249 |
aatggagaagttgtgaaaacttatgatgaaatacatagtgcaataacccttttatataga |
38163190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 34015962 - 34015908
Alignment:
| Q |
108 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaattaact |
162 |
Q |
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| T |
34015962 |
tatggttacttgactgacaagtaaactctatgatcaagttaatctctaaataact |
34015908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 43935836 - 43935917
Alignment:
| Q |
108 |
tatggttacttgactaccaagttaactctatgattaagttaatct----ctaattaactcaatcttatcaaactaacttcta |
185 |
Q |
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| T |
43935836 |
tatggttacttgactgtcaagtaaacgctatgattaagttaatctttaactatttatctcaatcttatccaactaacttcta |
43935917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 29661870 - 29661918
Alignment:
| Q |
108 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaa |
156 |
Q |
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| T |
29661870 |
tatggttaattgactaacaagtaaactctatgatcaagttaatctctaa |
29661918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 23398069 - 23398124
Alignment:
| Q |
108 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaattaactc |
163 |
Q |
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| T |
23398069 |
tatggttacttgactaacaagtaaactctatgatcaagtaagtctctaactaactc |
23398124 |
T |
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