View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_low_27 (Length: 220)
Name: NF10787_low_27
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 28290556 - 28290372
Alignment:
| Q |
23 |
gatgcttggtttgatcaattaagctgcatataagacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaa |
122 |
Q |
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| T |
28290556 |
gatgcttggtttgatcaattaagctgcatataagacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaa |
28290457 |
T |
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| Q |
123 |
atttataaatcaactaatggcagtaccgaattttctcctgagcagactctccccacatcagaaacacgaccccttccttcttctc |
207 |
Q |
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| T |
28290456 |
atttataaatcaactaatggcagtaccgaattttctcctgagcagactctccccacatcagaaacacgaccccttccttcttctc |
28290372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 28282280 - 28282096
Alignment:
| Q |
23 |
gatgcttggtttgatcaattaagctgcatataagacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaa |
122 |
Q |
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| T |
28282280 |
gatgcttggtttgatcaattaagctgaatataagaca--cccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattacgccaa |
28282183 |
T |
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| Q |
123 |
atttata-aatcaactaatggcagtaccgaattttctcctgagcagactctccccacatcagaaacacgaccccttccttcttctct |
208 |
Q |
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| T |
28282182 |
atttatagaatcaactaatggcagtaccgaattttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctct |
28282096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 28303190 - 28303122
Alignment:
| Q |
138 |
aatggcagtaccgaattttctcctgagcagactctccccacatcagaaacacgaccccttccttcttct |
206 |
Q |
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||||| |||||| || ||||||||||||||||| |||||||| ||||||||| || ||||||||||||| |
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| T |
28303190 |
aatggtagtacctaagtttctcctgagcagactttccccacagcagaaacacaactccttccttcttct |
28303122 |
T |
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