View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10787_low_28 (Length: 217)

Name: NF10787_low_28
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10787_low_28
NF10787_low_28
[»] chr5 (1 HSPs)
chr5 (1-199)||(11634902-11635100)
[»] chr3 (12 HSPs)
chr3 (7-147)||(30227292-30227432)
chr3 (7-157)||(30201117-30201267)
chr3 (7-148)||(29856790-29856931)
chr3 (7-155)||(29648978-29649126)
chr3 (92-140)||(30239063-30239111)
chr3 (7-131)||(30214664-30214787)
chr3 (94-147)||(29751882-29751935)
chr3 (106-154)||(30223140-30223188)
chr3 (105-153)||(36333932-36333980)
chr3 (118-155)||(29713035-29713072)
chr3 (106-155)||(30230381-30230430)
chr3 (105-153)||(36313855-36313903)
[»] chr6 (2 HSPs)
chr6 (7-146)||(5569421-5569560)
chr6 (7-130)||(5574415-5574538)
[»] chr8 (1 HSPs)
chr8 (94-148)||(1152919-1152973)
[»] chr7 (2 HSPs)
chr7 (92-153)||(16644731-16644792)
chr7 (92-153)||(17619092-17619153)
[»] chr1 (1 HSPs)
chr1 (104-140)||(16955668-16955704)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 11634902 - 11635100
Alignment:
Q  1 acagtaccaaattggcttgaacttccgacagacatcataagaaacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| |||||| |||| ||||||||||| ||||    
T  11634902 acagtaccaaattggcttgaacttccgacagacatcataacaaacattcttcggaggcttgataccattgacatagtaaaaaatgcatgtatagtatgtc 11635001  T
Q  101 ctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgataggtgattgcagttactttaatgcaaatttgccagagatctgtc 199  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  11635002 ctctatggtggagcatatgcaaggatcctctcatgtggcgtaccattcgcatgataggtgaacgcagttactttaatgcaaatttcccagagatctgtc 11635100  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 30227292 - 30227432
Alignment:
Q  7 ccaaattggcttgaacttccgacagacatcataagaaacattcttcagaggctttataccattgatatagtagaaaag-gcatgtatagtttgtcctcta 105  Q
    |||||||||||||||||||| | |||||||| || |||||||||||| ||||||  |||||| || || || || ||| ||||||  ||| |||||||||    
T  30227292 ccaaattggcttgaacttcctagagacatcacaacaaacattcttcaaaggcttggtaccatcgagattgt-gacaagtgcatgtcaagtgtgtcctcta 30227390  T
Q  106 tggtggaacatatgcaaggatcctctcatgtggcgtaccatt 147  Q
    | ||||||||| ||||||||||||||||||||||| ||||||    
T  30227391 tagtggaacatttgcaaggatcctctcatgtggcgcaccatt 30227432  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 30201117 - 30201267
Alignment:
Q  7 ccaaattggcttgaacttccgacagacatcataagaaacattcttcagaggctttataccattgatatagtagaaaag-gcatgtatagtttgtcctcta 105  Q
    |||||||||||||||||||| | |||||| | |  |||||||||||| ||||||  ||||||||| || || || ||| ||||||  ||| |||||||||    
T  30201117 ccaaattggcttgaacttcctaaagacattacagaaaacattcttcaaaggcttagtaccattgaaattgt-gacaagtgcatgtcaagtgtgtcctcta 30201215  T
Q  106 tggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgatag 157  Q
    ||||||||||| ||||||||||||||||||||||  |||||||  |||||||    
T  30201216 tggtggaacatttgcaaggatcctctcatgtggcacaccattcatatgatag 30201267  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 29856790 - 29856931
Alignment:
Q  7 ccaaattggcttgaacttccgacagacatcataagaaacattcttcagaggctttataccattgatatagtagaaaag-gcatgtatagtttgtcctcta 105  Q
    ||||||||||||||||||| || ||| |||| |  |||||| ||||| |||||| |||| ||||| || || |||||| ||||||  |||||||||||||    
T  29856790 ccaaattggcttgaacttctgagagaaatcacagcaaacatccttcaaaggcttgatacaattgaaatcgt-gaaaagtgcatgtcaagtttgtcctcta 29856888  T
Q  106 tggtggaacatatgcaaggatcctctcatgtggcgtaccattc 148  Q
    |||||| ||||||| || ||||||||| |||||||||||||||    
T  29856889 tggtgggacatatgtaaagatcctctcctgtggcgtaccattc 29856931  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 29648978 - 29649126
Alignment:
Q  7 ccaaattggcttgaacttccgacagacatcataagaaacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtcctctat 106  Q
    |||||||||||||||||||| | |||||||| ||  ||||| |||||  |  || ||||  |||| || |||  ||| |||||  |||| ||||||||||    
T  29648978 ccaaattggcttgaacttccaagagacatcacaattaacatccttcaaggagttgatactgttgaaattgtaacaaatgcatgcctagtatgtcctctat 29649077  T
Q  107 ggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgat 155  Q
     ||||||||| || |||||||||||||||||||||||||||| ||||||    
T  29649078 cgtggaacatttgtaaggatcctctcatgtggcgtaccattcacatgat 29649126  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 30239063 - 30239111
Alignment:
Q  92 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 140  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30239063 tagtatgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 30239111  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 30214664 - 30214787
Alignment:
Q  7 ccaaattggcttgaacttccgacagacatcataagaaacattcttcagaggctttataccattgatatagtagaaaag-gcatgtatagtttgtcctcta 105  Q
    |||||||||||||||||||| | |||||||| || ||||||| |||| || |||  ||||||||| || || || ||| ||||||  ||| |||||||||    
T  30214664 ccaaattggcttgaacttcctagagacatcacaacaaacatt-ttcaaagacttggtaccattgagattgt-gacaagtgcatgtcaagtgtgtcctcta 30214761  T
Q  106 tggtggaacatatgcaaggatcctct 131  Q
    ||||||||||| ||||||||||||||    
T  30214762 tggtggaacatttgcaaggatcctct 30214787  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 29751882 - 29751935
Alignment:
Q  94 gtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccatt 147  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||    
T  29751882 gtttgtcctctttggtggaacgtttgcaaggatcctctcatgtggagtaccatt 29751935  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 30223140 - 30223188
Alignment:
Q  106 tggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatga 154  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  30223140 tggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatga 30223188  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 36333980 - 36333932
Alignment:
Q  105 atggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 153  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||    
T  36333980 atggtggaacatttgcaaggatcctctcatgtggcgcactattcgcatg 36333932  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 29713035 - 29713072
Alignment:
Q  118 tgcaaggatcctctcatgtggcgtaccattcgcatgat 155  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  29713035 tgcaaggatcctctaatgtggcgtaccattcacatgat 29713072  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 30230381 - 30230430
Alignment:
Q  106 tggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgat 155  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||||| ||||||    
T  30230381 tggtggagcatttgcaaggatcctcgcatgtggcgcaccattcacatgat 30230430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 36313903 - 36313855
Alignment:
Q  105 atggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 153  Q
    ||||| ||| || ||||||||||||||||||||||| || |||||||||    
T  36313903 atggttgaagatttgcaaggatcctctcatgtggcgcactattcgcatg 36313855  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 5569560 - 5569421
Alignment:
Q  7 ccaaattggcttgaacttccgacagacatcataagaaacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtcctctat 106  Q
    ||||||||||||| |||||| | ||||||||     ||||| ||||| |||||| |||| |||||| |||||  ||  ||||||  ||| ||||||||||    
T  5569560 ccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctat 5569461  T
Q  107 ggtggaacatatgcaaggatcctctcatgtggcgtaccat 146  Q
    |||||||||| ||||||||||||||  |||||||||||||    
T  5569460 ggtggaacatttgcaaggatcctcttgtgtggcgtaccat 5569421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 5574538 - 5574415
Alignment:
Q  7 ccaaattggcttgaacttccgacagacatcataagaaacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtcctctat 106  Q
    ||||||||||||| |||||| | ||||||||     ||||| ||||| |||||| |||| |||||| |||||  ||  ||||||  ||| ||||||||||    
T  5574538 ccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctat 5574439  T
Q  107 ggtggaacatatgcaaggatcctc 130  Q
    |||||||||| |||||||||||||    
T  5574438 ggtggaacatttgcaaggatcctc 5574415  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 1152973 - 1152919
Alignment:
Q  94 gtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattc 148  Q
    ||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||    
T  1152973 gtttgtcctctgtggtggcacatttgcaaggatcctctaatgtggcgtaccattc 1152919  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 16644792 - 16644731
Alignment:
Q  92 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 153  Q
    |||| ||| |||||||||||||||| |||||||| |||||||||||||| ||||||| ||||    
T  16644792 tagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg 16644731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 17619153 - 17619092
Alignment:
Q  92 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 153  Q
    |||| ||| |||||||||||||||| |||||||| |||||||||||||| ||||||| ||||    
T  17619153 tagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg 17619092  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 16955704 - 16955668
Alignment:
Q  104 tatggtggaacatatgcaaggatcctctcatgtggcg 140  Q
    |||||||||| || |||||||||||||||||||||||    
T  16955704 tatggtggaatatttgcaaggatcctctcatgtggcg 16955668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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