View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10787_low_3 (Length: 459)

Name: NF10787_low_3
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10787_low_3
NF10787_low_3
[»] chr2 (3 HSPs)
chr2 (309-448)||(27279193-27279332)
chr2 (123-313)||(27278972-27279165)
chr2 (21-114)||(16915980-16916073)
[»] chr1 (5 HSPs)
chr1 (21-114)||(18431244-18431337)
chr1 (21-80)||(1014877-1014936)
chr1 (78-120)||(22787423-22787465)
chr1 (78-114)||(11943670-11943706)
chr1 (82-112)||(6154077-6154107)
[»] scaffold0571 (1 HSPs)
scaffold0571 (21-112)||(63-154)
[»] chr7 (5 HSPs)
chr7 (21-114)||(46437727-46437820)
chr7 (21-74)||(39786133-39786186)
chr7 (78-120)||(38663364-38663406)
chr7 (82-119)||(39781160-39781197)
chr7 (82-119)||(43266096-43266133)
[»] chr6 (6 HSPs)
chr6 (25-113)||(5013734-5013821)
chr6 (21-80)||(18819094-18819153)
chr6 (21-80)||(24903862-24903921)
chr6 (78-119)||(16693607-16693648)
chr6 (78-119)||(18816826-18816867)
chr6 (78-112)||(595770-595804)
[»] chr8 (3 HSPs)
chr8 (21-80)||(45484067-45484126)
chr8 (78-119)||(45486353-45486394)
chr8 (82-119)||(11462730-11462767)
[»] chr3 (9 HSPs)
chr3 (21-80)||(26905332-26905391)
chr3 (21-80)||(36615649-36615708)
chr3 (78-120)||(26557644-26557686)
chr3 (78-120)||(52119126-52119168)
chr3 (78-119)||(25070869-25070910)
chr3 (78-119)||(26903064-26903105)
chr3 (78-119)||(28210880-28210921)
chr3 (78-119)||(36617935-36617976)
chr3 (82-119)||(2125769-2125806)
[»] chr4 (4 HSPs)
chr4 (21-80)||(8904158-8904217)
chr4 (21-80)||(45066030-45066089)
chr4 (78-112)||(45065888-45065922)
chr4 (82-114)||(8904430-8904462)
[»] chr5 (5 HSPs)
chr5 (21-76)||(17075330-17075385)
chr5 (82-119)||(9047488-9047525)
chr5 (82-114)||(423991-424023)
chr5 (81-114)||(17077002-17077035)
chr5 (82-119)||(18108362-18108399)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 309 - 448
Target Start/End: Original strand, 27279193 - 27279332
Alignment:
Q  309 ttacttttgacaggaaatggtggatttagtctctctggaagtgaacaacaccatccattttgcaaaaatgaatgattcacaatttcctagtggtattcaa 408  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27279193 ttacttttgacaggaaatggtggatttagtctctctggaattgaacaacaccatccattttgcaaaaatgaatgattcacaatttcctagtggtattcaa 27279292  T
Q  409 ccaaactgctcctacacatgtaggcttcttctcttttctt 448  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  27279293 ccaaactgctcctacacatgtaggcttcttctattttctt 27279332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 123 - 313
Target Start/End: Original strand, 27278972 - 27279165
Alignment:
Q  123 ttacctaaagtgtattttcctaatatgttatactggttagtagatactaacccttattttcttaaataaatatatacctcgaagaataactagtttatag 222  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27278972 ttacctaaagtgtattttcctaatatgttatattggttagtagatactaacccttattttcttaaataaatatatacctcgaagaataactagtctatag 27279071  T
Q  223 tttctctcnnnnnnnnnnnnnnnctagtccataatttgtggttggagatacaatgtccaacaataaaaattgta---tgtaaattattcttact 313  Q
    ||||||||               |||||| ||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  27279072 tttctctcaaaaaaaaaaaaaaactagtctatagtttgtggttggagatacaatgtccaacaataaaaattgtatgctgtaaattattcttact 27279165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 16916073 - 16915980
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgc 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16916073 cctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctaaatccgc 16915980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 18431337 - 18431244
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgc 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18431337 cctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgc 18431244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 1014877 - 1014936
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 80  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1014877 cctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 1014936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 22787465 - 22787423
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctgg 120  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  22787465 aaattttgccacactaatatgacatgtctagatccgcccctgg 22787423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 11943706 - 11943670
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgc 114  Q
    |||||||||||||||||||| ||||||||||||||||    
T  11943706 aaattttgccacactaatatcaaatgtctagatccgc 11943670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 6154107 - 6154077
Alignment:
Q  82 tttgccacactaatatgaaatgtctagatcc 112  Q
    |||||||||||||||||||||||||||||||    
T  6154107 tttgccacactaatatgaaatgtctagatcc 6154077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 63 - 154
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatcc 112  Q
    |||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  63 cctccaatttcaagctatcatcctgacatccaaaatgaggtacgcaaagcttacttgaaattttgccacactaatatgaaatgtctagatcc 154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 46437727 - 46437820
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgc 114  Q
    |||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46437727 cctccaatttcaagctatcatcctgacatccaagatgcagtacgcaaagcttacttgaaattttgccacactaatataaaatgtctagatccgc 46437820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 39786186 - 39786133
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttac 74  Q
    ||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  39786186 cctccaatttcaaactatcatcctgacattcaagatgaggtacgtaaagcttac 39786133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 38663364 - 38663406
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctgg 120  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  38663364 aaattttgccacactaatatgcaatgtctagatccgcccctgg 38663406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 39781160 - 39781197
Alignment:
Q  82 tttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  39781160 tttgccacactaatatgcaatgtctagatccgcccctg 39781197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 43266096 - 43266133
Alignment:
Q  82 tttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  43266096 tttgccacactaatatgcaatgtctagatccgcccctg 43266133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 5013821 - 5013734
Alignment:
Q  25 caatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccg 113  Q
    ||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5013821 caatttcaagctatcatcctg-catccaagatgaggcatgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccg 5013734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 18819153 - 18819094
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 80  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18819153 cctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 18819094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 24903921 - 24903862
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 80  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24903921 cctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 24903862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 16693607 - 16693648
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  16693607 aaattttgccacactaatatgaaatgtctagatccgcccctg 16693648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 18816867 - 18816826
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  18816867 aaattttgccacactaatatgcaatgtctagatccgcccctg 18816826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 595770 - 595804
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatcc 112  Q
    |||||||||||||||||||| ||||||||||||||    
T  595770 aaattttgccacactaatatcaaatgtctagatcc 595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 45484067 - 45484126
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 80  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45484067 cctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 45484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 45486353 - 45486394
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  45486353 aaattttgccacactaatatgcaatgtctagatccgcccctg 45486394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 11462767 - 11462730
Alignment:
Q  82 tttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  11462767 tttgccacactaatatgaaatgtctagattcgcccctg 11462730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 26905391 - 26905332
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 80  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26905391 cctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 26905332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 36615649 - 36615708
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 80  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36615649 cctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 36615708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 26557644 - 26557686
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctgg 120  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  26557644 aaattttgccacactaatatgacatgtctagatccgcccctgg 26557686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 52119126 - 52119168
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctgg 120  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  52119126 aaattttgccacactaatatgacatgtctagatccgcccctgg 52119168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 25070869 - 25070910
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  25070869 aaattttgccacactaatatgcaatgtctagatccgcccctg 25070910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 26903105 - 26903064
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  26903105 aaattttgccacactaatatgcaatgtctagatccgcccctg 26903064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 28210921 - 28210880
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  28210921 aaattttgccacactaatatgcaatgtctagatccgcccctg 28210880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 36617935 - 36617976
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  36617935 aaattttgccacactaatatgcaatgtctagatccgcccctg 36617976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 2125769 - 2125806
Alignment:
Q  82 tttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  2125769 tttgccacactaatatgcaatgtctagatccgcccctg 2125806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 8904158 - 8904217
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 80  Q
    |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
T  8904158 cctccaatttcatgctatcatcctgtcatctaagatgaggtacgtaaagcttacttgaaa 8904217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 45066089 - 45066030
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 80  Q
    ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  45066089 cctccaatttcaagctatcttcctgaaatccaagatgaggtacgtaaagcttacttgaaa 45066030  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 45065922 - 45065888
Alignment:
Q  78 aaattttgccacactaatatgaaatgtctagatcc 112  Q
    |||||||||||||||||||||||||||||||||||    
T  45065922 aaattttgccacactaatatgaaatgtctagatcc 45065888  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 8904430 - 8904462
Alignment:
Q  82 tttgccacactaatatgaaatgtctagatccgc 114  Q
    |||||||||||||||||||||||||||||||||    
T  8904430 tttgccacactaatatgaaatgtctagatccgc 8904462  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 17075330 - 17075385
Alignment:
Q  21 cctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttactt 76  Q
    |||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  17075330 cctccaatttcaagctatcaacctgacatccaagatgaggtatgtaaagcttactt 17075385  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 9047525 - 9047488
Alignment:
Q  82 tttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  9047525 tttgccacactaatatgaaatgtctagatccgcccctg 9047488  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 424023 - 423991
Alignment:
Q  82 tttgccacactaatatgaaatgtctagatccgc 114  Q
    |||||||||||||||||||||||||||||||||    
T  424023 tttgccacactaatatgaaatgtctagatccgc 423991  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 17077002 - 17077035
Alignment:
Q  81 ttttgccacactaatatgaaatgtctagatccgc 114  Q
    ||||| ||||||||||||||||||||||||||||    
T  17077002 ttttgtcacactaatatgaaatgtctagatccgc 17077035  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 18108399 - 18108362
Alignment:
Q  82 tttgccacactaatatgaaatgtctagatccgctcctg 119  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  18108399 tttgccacactaatataaaatgtctagatccgcccctg 18108362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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