View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_low_4 (Length: 446)
Name: NF10787_low_4
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 41261242 - 41261653
Alignment:
| Q |
18 |
cgtaggttgttcaaaagttgttcatttggtgatttttgttgatcaaggctttgagggtttgtgttaacaatatttgtttcttgcgtttggaatggattat |
117 |
Q |
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| T |
41261242 |
cgtaggttgttcaaaagttgttcatttggtggtttttgttgatcaaggctttgagggtttgtgttaacaatatttgtttcttgtgtttggaatggattat |
41261341 |
T |
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| Q |
118 |
ttaatgttggaccaaccacattggaagcaattgtgcatgtgtggtttcctcggtatgtgatttcgaagattgttgggtcttcatcagatctttgtacttg |
217 |
Q |
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| T |
41261342 |
ttaatgttggaccaaccacattggaagcaattgtgcatgtgtggtttcctcggtatgtgatttcgaagattgttgggtcttcatcagatctttgtacttg |
41261441 |
T |
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| Q |
218 |
ctttgttgccaaacatcctagaacgtttctatgagtgcatctgtaatagcctctgcatacacacatccaaaatttatgtaacaaaactatatcaatagat |
317 |
Q |
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| T |
41261442 |
ctttgttgccaaacatcctagaacgtttctatgagtgcatctgtaatagcctctgcatacacacatccaaaatttatgtaacaaaactatatcaatag-- |
41261539 |
T |
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| Q |
318 |
atatataacattaaattcagaaattatataccttggatgcatggctccaaggatgtctttctgaccatattttctccaactatacccatcatcaagagga |
417 |
Q |
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| T |
41261540 |
atatataacattaaattcagaaattatataccttggatgcatggctccaaggatgtctttctgaccatattttctccaactatacccatcatcaagagga |
41261639 |
T |
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| Q |
418 |
ccttccattgccat |
431 |
Q |
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| T |
41261640 |
ccttccattgccat |
41261653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 48411107 - 48411195
Alignment:
| Q |
186 |
attgttgggtcttcatcagatctttgtacttgctttgttgccaaacatcctagaacgtttctatgagtgcatctgtaatagcctctgca |
274 |
Q |
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| T |
48411107 |
attgttggatcttcatctgacctttgaacttgctttgttgctaggcatccttgtccatttctatgtgtgcatctgtaataccctctgca |
48411195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 41854005 - 41854053
Alignment:
| Q |
347 |
accttggatgcatggctccaaggatgtctttctgaccatattttctcca |
395 |
Q |
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| T |
41854005 |
accttggatgtttggtgccaaggatatctttctgaccatattttctcca |
41854053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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