View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_low_5 (Length: 427)
Name: NF10787_low_5
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 25 - 418
Target Start/End: Original strand, 34761839 - 34762231
Alignment:
| Q |
25 |
catcattctatttcaccattctctctaaggtatatatacacttactgagatgtatactgaacannnnnnncaccatagaattttcctacttttaaacata |
124 |
Q |
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| T |
34761839 |
catcattctatttcaccattctctctaatgtatgtatacacttattgagatgtctactgaacatttttttcaccatagaattttcctacttttaaacata |
34761938 |
T |
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| Q |
125 |
caaaacccacannnnnnnaaatgtgtccatctgaagtgatattaggggtatgaaaagtttatttcctttatttggtattattcaattaaatactatagac |
224 |
Q |
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| T |
34761939 |
caaaatacacatttttttaaatgtgtccatctgaagtgatattaggggtatgaaaagtttatttcctttatttggtattattcaattaa-tactatagac |
34762037 |
T |
|
| Q |
225 |
tattttctcagatttgggccggctgacaaaagaacatgatgtgctggattacagcacagaaggaagctaggtggaagacacccacccacccctggctggg |
324 |
Q |
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| T |
34762038 |
tattttctcagatttgggccggctgacaaaagaacatgatgtgctggattacagcacagaaggaagctaggtggaagacacccacccacccctggctggg |
34762137 |
T |
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| Q |
325 |
gtaccatatctcatatataattcagattgtaattaggtcaaagagattaatggaatatagttaagtacagatcatccaccattccaccctatgc |
418 |
Q |
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| T |
34762138 |
gtaccatatctcatatataattcagattgtaattaggtcaaagagattaatggaatatagttaagtacagatcatccaccattccacactatgc |
34762231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 25 - 418
Target Start/End: Complemental strand, 34765007 - 34764615
Alignment:
| Q |
25 |
catcattctatttcaccattctctctaaggtatatatacacttactgagatgtatactgaacannnnnnncaccatagaattttcctacttttaaacata |
124 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
34765007 |
catcattctatttcaccattctctctaatgtatgtatacacttattgagatgtctactgaacatttttttcaccatagaattttcctacttttaaacata |
34764908 |
T |
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| Q |
125 |
caaaacccacannnnnnnaaatgtgtccatctgaagtgatattaggggtatgaaaagtttatttcctttatttggtattattcaattaaatactatagac |
224 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34764907 |
caaaatacacatttttttaaatgtgtccatctgaagtgatattaggggtatgaaaagtttatttcctttatttggtattattcaattaa-tactatagac |
34764809 |
T |
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| Q |
225 |
tattttctcagatttgggccggctgacaaaagaacatgatgtgctggattacagcacagaaggaagctaggtggaagacacccacccacccctggctggg |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34764808 |
tattttctcagatttgggccggctgacaaaagaacatgatgtgctggattacagcacagaaggaagctaggtggaagacacccacccacccctggctggg |
34764709 |
T |
|
| Q |
325 |
gtaccatatctcatatataattcagattgtaattaggtcaaagagattaatggaatatagttaagtacagatcatccaccattccaccctatgc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34764708 |
gtaccatatctcatatataattcagattgtaattaggtcaaagagattaatggaatatagttaagtacagatcatccaccattccacactatgc |
34764615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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