View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10787_low_6 (Length: 425)

Name: NF10787_low_6
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10787_low_6
NF10787_low_6
[»] chr6 (5 HSPs)
chr6 (28-406)||(33605376-33605754)
chr6 (63-137)||(6071123-6071197)
chr6 (65-132)||(33605971-33606038)
chr6 (63-137)||(8481918-8481991)
chr6 (63-135)||(12092575-12092647)
[»] chr5 (8 HSPs)
chr5 (63-137)||(31509614-31509688)
chr5 (63-137)||(9510613-9510687)
chr5 (58-135)||(36522325-36522402)
chr5 (77-135)||(41632775-41632833)
chr5 (63-114)||(31509745-31509796)
chr5 (58-135)||(36568655-36568732)
chr5 (34-66)||(13042774-13042806)
chr5 (34-66)||(13112772-13112804)
[»] chr8 (7 HSPs)
chr8 (69-137)||(9620387-9620455)
chr8 (69-135)||(4154765-4154831)
chr8 (71-135)||(20995502-20995566)
chr8 (55-135)||(33831971-33832051)
chr8 (63-138)||(4154373-4154448)
chr8 (77-135)||(41972151-41972209)
chr8 (58-135)||(9620764-9620841)
[»] chr1 (8 HSPs)
chr1 (58-133)||(1187452-1187527)
chr1 (63-138)||(22793268-22793343)
chr1 (59-135)||(1188677-1188753)
chr1 (77-135)||(22077602-22077660)
chr1 (63-136)||(50556443-50556516)
chr1 (63-135)||(19283548-19283620)
chr1 (69-136)||(41184524-41184591)
chr1 (77-125)||(47379892-47379940)
[»] chr3 (7 HSPs)
chr3 (69-135)||(46546424-46546490)
chr3 (63-133)||(39336322-39336392)
chr3 (63-135)||(47965008-47965080)
chr3 (77-135)||(21832450-21832508)
chr3 (34-136)||(31190009-31190111)
chr3 (88-137)||(12747870-12747919)
chr3 (55-136)||(37991062-37991143)
[»] chr7 (4 HSPs)
chr7 (69-118)||(10341842-10341891)
chr7 (89-135)||(28301662-28301708)
chr7 (54-136)||(30244693-30244775)
chr7 (58-98)||(37345948-37345988)
[»] chr4 (7 HSPs)
chr4 (63-135)||(28034222-28034294)
chr4 (58-138)||(34544094-34544176)
chr4 (77-135)||(3244556-3244614)
chr4 (77-135)||(54741283-54741341)
chr4 (69-130)||(23556963-23557024)
chr4 (55-135)||(2740693-2740773)
chr4 (77-125)||(7147746-7147794)
[»] chr2 (10 HSPs)
chr2 (77-137)||(30313169-30313229)
chr2 (58-135)||(33561539-33561616)
chr2 (66-117)||(29874119-29874170)
chr2 (55-137)||(30323455-30323537)
chr2 (58-135)||(962591-962668)
chr2 (69-110)||(13154480-13154521)
chr2 (58-135)||(33953859-33953936)
chr2 (69-133)||(3594277-3594341)
chr2 (69-137)||(29873636-29873704)
chr2 (58-135)||(41678455-41678534)
[»] scaffold0113 (1 HSPs)
scaffold0113 (63-138)||(39828-39903)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 28 - 406
Target Start/End: Complemental strand, 33605754 - 33605376
Alignment:
Q  28 cacagacttacccaaaaccttaaggaaataggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttac 127  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||| || |||||| |    
T  33605754 cacacacttacccaaaactttaaggaaataggtcttctcaattataaagtgttcaacctccacttttctatctgatgtgagacatatagctcacacttgc 33605655  T
Q  128 acacaacaattgaatgagttacatgccttggttacaatatatattatgcatgctctaatgctgattatggattaaagcaattttgtagattacagaataa 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  33605654 acacaacaattgaatgagttacatgcctgggttacaatatatattatgcatgctctaatgctgattatggattaaagcatatttgtagatgacagaataa 33605555  T
Q  228 ttccttataccaccatggagaaagaataggacatctacaataattggcaggactgacctaaaggtgatgtcactaaagtctttactccttaggcctcaat 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  33605554 ttccttataccaccatggagaaagaataggacatctacaataattggcaggactgacctaaaggtgaggtcactaaagtccttactccttaggcctcaat 33605455  T
Q  328 aagagatgaaccccatagccagagacattgcaatcaaaatttaaataatggtaatatttttaagtttcacgtacgtatc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33605454 aagagatgaaccccatagccagagacattgcaatcaaaatttaaataatggtaatatttttaagtttcacgtacgtatc 33605376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 6071197 - 6071123
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaat 137  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||||    
T  6071197 tctcacttataaagtgttcaacctccacttttctattcaatgtgggacatataactcacacttgcacacaacaat 6071123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 33606038 - 33605971
Alignment:
Q  65 tcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacaca 132  Q
    ||||||||||| |||||||||||||||||||||| | ||||| ||||||||||| ||| || ||||||    
T  33606038 tcaattataaagtgttcaacctccacttttctattcgatgtgggacatataacttacatttgcacaca 33605971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 8481991 - 8481918
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaat 137  Q
    ||||| ||||||| |||||||||||||||||| |||   ||||| ||||||||||| |||||| |||||||||||    
T  8481991 tctcatttataaagtgttcaacctccacttttatatctgatgtg-gacatataactcacacttgcacacaacaat 8481918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 12092575 - 12092647
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||| ||||||| || ||||||||||||||||||| | ||||| ||||| ||||  || ||| |||||||||    
T  12092575 tctcacttataaagtgctcaacctccacttttctatccgatgtgggacatctaacacacccttgcacacaaca 12092647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 31509688 - 31509614
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaat 137  Q
    ||||| ||||||| || ||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  31509688 tctcacttataaagtgctcaacctccacttttctatccgatgtgagacatataactcacacttgcacacaacaat 31509614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 9510613 - 9510687
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaat 137  Q
    ||||| ||||||||   ||||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||    
T  9510613 tctcacttataaatgactcaacctccacttttctattcaatgtgaaacatataactcacactttcacacaacaat 9510687  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 36522325 - 36522402
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    |||| ||||| ||||||| |||||||| |||| |||||||| ||||||||||||||||||| |||||| || ||||||    
T  36522325 ggtcctctcacttataaaatgttcaacttccatttttctatccaatgtgagacatataactcacactttcatacaaca 36522402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 41632833 - 41632775
Alignment:
Q  77 tgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||||||  |||||||||| | ||||||||||||||||| |||||| |||||||||    
T  41632833 tgttcaacctttacttttctatccgatgtgagacatataacttacacttgcacacaaca 41632775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 31509796 - 31509745
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatat 114  Q
    ||||| ||||||| || ||||||||||||||||||| | |||||||||||||    
T  31509796 tctcacttataaagtgctcaacctccacttttctatccgatgtgagacatat 31509745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 36568655 - 36568732
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    |||| ||||| ||||||  |||||||| |  |||||||||| | ||||| ||||||||||| |||||| |||||||||    
T  36568655 ggtcatctcacttataaggtgttcaacttttacttttctatccgatgtgggacatataactcacacttgcacacaaca 36568732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 13042806 - 13042774
Alignment:
Q  34 cttacccaaaaccttaaggaaataggtcttctc 66  Q
    ||||||||||||||||||| |||||||||||||    
T  13042806 cttacccaaaaccttaaggcaataggtcttctc 13042774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 13112804 - 13112772
Alignment:
Q  34 cttacccaaaaccttaaggaaataggtcttctc 66  Q
    ||||||||||||||||||| |||||||||||||    
T  13112804 cttacccaaaaccttaaggcaataggtcttctc 13112772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 9620387 - 9620455
Alignment:
Q  69 ttataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaat 137  Q
    ||||||| ||||||| |||||||||||||| ||| ||| || ||||||||||||||| |||||||||||    
T  9620387 ttataaagtgttcaaactccacttttctattcaacgtgggatatataactgacacttgcacacaacaat 9620455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 4154765 - 4154831
Alignment:
Q  69 ttataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||| ||||||||||||||||||||||   ||||| ||||||||||| |||||| |||||||||    
T  4154765 ttataaagtgttcaacctccacttttctatcagatgtgggacatataactcacacttgcacacaaca 4154831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 20995502 - 20995566
Alignment:
Q  71 ataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||| |||||||||||||||||| |||   ||||||||||||||||| |||||| |||||||||    
T  20995502 ataaagtgttcaacctccacttttttatctgatgtgagacatataactcacacttgcacacaaca 20995566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 33832051 - 33831971
Alignment:
Q  55 ataggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||| ||| | ||||||| |||||||| || |||||||| | ||| ||||||||||||||| |||||| |||||||||    
T  33832051 ataggtcctcttacttataaagtgttcaacttctacttttctcttcaacgtgagacatataactcacacttgcacacaaca 33831971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 4154373 - 4154448
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaatt 138  Q
    ||||| ||||||| ||||||||||||||||||||||   ||||  ||||||||||| ||| || ||||||||||||    
T  4154373 tctcacttataaagtgttcaacctccacttttctatctgatgtaggacatataactcacatttgcacacaacaatt 4154448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 41972209 - 41972151
Alignment:
Q  77 tgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||||||  |||||||||| | ||||| ||||||||||| |||||| |||||||||    
T  41972209 tgttcaacctttacttttctatccgatgtgggacatataactcacacttgcacacaaca 41972151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 9620764 - 9620841
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    |||| ||||| ||||||| || ||||| || ||||||||||    |||||||||||||||| |||||| |||||||||    
T  9620764 ggtcctctcacttataaagtgatcaacttctacttttctatctgttgtgagacatataactcacacttgcacacaaca 9620841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 1187452 - 1187527
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaa 133  Q
    |||||||||| ||||||| |||| ||||||||||||| ||| | ||||||||||||||| | |||||| |||||||    
T  1187452 ggtcttctcacttataaaatgtttaacctccacttttatattcgatgtgagacatataattcacacttgcacacaa 1187527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 22793343 - 22793268
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaatt 138  Q
    ||||| ||||||| | ||||||||| |||||||||||| ||||| ||||||||||| |||||| | ||||||||||    
T  22793343 tctcacttataaagttttcaacctctacttttctatacgatgtgggacatataactcacacttgctcacaacaatt 22793268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 1188677 - 1188753
Alignment:
Q  59 gtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||||| ||||||| | |||||||||||||||||||| | || ||  |||||||||| |||||| |||||||||    
T  1188677 gtcttctcacttataaaatattcaacctccacttttctatccgatatggaacatataactcacacttgcacacaaca 1188753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 22077602 - 22077660
Alignment:
Q  77 tgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||||||  |||||||||| | ||||||||||||||||| |||||| |||||||||    
T  22077602 tgttcaacctttacttttctatccgatgtgagacatataactcacacttgcacacaaca 22077660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 50556516 - 50556443
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaa 136  Q
    ||||| |||||||||||||||||||| ||||||||||  ||||| || |||||||  |||||| ||| ||||||    
T  50556516 tctcacttataaattgttcaacctccgcttttctatatgatgtgtgatatataacccacacttgcacgcaacaa 50556443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 19283548 - 19283620
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||| ||| ||| || ||||||||||||||||||| |  |||| ||||||||||| |||||| |||||||||    
T  19283548 tctcatttacaaagtgctcaacctccacttttctatccggtgtgggacatataactcacacttgcacacaaca 19283620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 41184524 - 41184591
Alignment:
Q  69 ttataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaa 136  Q
    ||||||| ||||||||||  ||| || ||| | ||||||||||||||||| |||||| ||||||||||    
T  41184524 ttataaagtgttcaacctttactattttatccgatgtgagacatataactcacacttgcacacaacaa 41184591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 47379892 - 47379940
Alignment:
Q  77 tgttcaacctccacttttctatacaatgtgagacatataactgacactt 125  Q
    |||||||||||||||||||||| | ||||| || |||||||| ||||||    
T  47379892 tgttcaacctccacttttctatccgatgtgggatatataactcacactt 47379940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 46546424 - 46546490
Alignment:
Q  69 ttataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||| |||||||||||||| |||| || ||||||  ||||||||||| ||||||||||||||||    
T  46546424 ttataaagtgttcaacctccacatttcaatccaatgtaggacatataactcacacttacacacaaca 46546490  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 39336322 - 39336392
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaa 133  Q
    ||||| ||||||| |||||||||||||  ||||||| | ||||| ||||||||||| |||||| |||||||    
T  39336322 tctcacttataaagtgttcaacctccaactttctatccgatgtgggacatataactcacacttgcacacaa 39336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 47965008 - 47965080
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||| ||||| | |||| ||||||||||||||||| | |||| | |||||||||| |||||| |||||||||    
T  47965008 tctcacttatataatgtttaacctccacttttctatccgatgtaaaacatataactcacacttgcacacaaca 47965080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 21832450 - 21832508
Alignment:
Q  77 tgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||||||  |||||||||| ||||||| ||||||||||| |||||| |||| ||||    
T  21832450 tgttcaacctttacttttctatccaatgtgggacatataactcacacttgcacataaca 21832508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 31190111 - 31190009
Alignment:
Q  34 cttacccaaaaccttaaggaaataggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaa 133  Q
    |||||||||||||||||||  || |||| ||| | ||||||  ||||||||||  ||| || ||| | ||||| ||||||| ||| |||||| |||||||    
T  31190111 cttacccaaaaccttaaggctatgggtcctctaacttataaggtgttcaacctttactcttttatccgatgtgggacatatcactcacacttgcacacaa 31190012  T
Q  134 caa 136  Q
    |||    
T  31190011 caa 31190009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 12747870 - 12747919
Alignment:
Q  88 cacttttctatacaatgtgagacatataactgacacttacacacaacaat 137  Q
    ||||||||||| | ||||| ||||||||||| |||||| |||||||||||    
T  12747870 cacttttctatccgatgtgggacatataactcacacttgcacacaacaat 12747919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 37991062 - 37991143
Alignment:
Q  55 ataggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaa 136  Q
    ||||||| ||| | ||||||  ||||||||||  ||| || ||| ||||||||||||||||||| ||||||  |||||||||    
T  37991062 ataggtcctcttacttataaggtgttcaacctttactattttatccaatgtgagacatataactcacacttgtacacaacaa 37991143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 10341891 - 10341842
Alignment:
Q  69 ttataaattgttcaacctccacttttctatacaatgtgagacatataact 118  Q
    ||||||| |||||||||||||||||||||| | |||||||||||||||||    
T  10341891 ttataaagtgttcaacctccacttttctatccgatgtgagacatataact 10341842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 28301662 - 28301708
Alignment:
Q  89 acttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    |||||||||| | ||||||||||||||||| |||||| |||||||||    
T  28301662 acttttctatccgatgtgagacatataactcacacttgcacacaaca 28301708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 30244775 - 30244693
Alignment:
Q  54 aataggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaa 136  Q
    |||||||| ||| | ||||||  ||||||||||  ||| || ||| ||||||| ||||||||||| |||||| ||||||||||    
T  30244775 aataggtcctcttatttataaggtgttcaacctttactcttttatccaatgtgggacatataactcacacttgcacacaacaa 30244693  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 37345988 - 37345948
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctat 98  Q
    |||||||||| ||||||| |||| |||||||||||||||||    
T  37345988 ggtcttctcacttataaaatgtttaacctccacttttctat 37345948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 28034294 - 28034222
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||| ||||||| |||||||||||||||||||||| | ||| | ||||||||| | |||||| |||||||||    
T  28034294 tctcacttataaagtgttcaacctccacttttctatccgatgcgggacatataattcacacttgcacacaaca 28034222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 34544176 - 34544094
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctatacaatgtgag--acatataactgacacttacacacaacaatt 138  Q
    |||| ||||| ||||||| || ||||||||||||||||||| | |||||||  | |||||||| |||||||| ||||||||||    
T  34544176 ggtcctctcatttataaagtgatcaacctccacttttctattcgatgtgagatatatataactcacacttactcacaacaatt 34544094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 3244556 - 3244614
Alignment:
Q  77 tgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||||||  |||||||||| | ||||||||||||||||| |||||| |||||||||    
T  3244556 tgttcaacctttacttttctatccgatgtgagacatataactcacacttgcacacaaca 3244614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 54741283 - 54741341
Alignment:
Q  77 tgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||||||  |||||||||| | ||||||||||||||| | |||||| |||||||||    
T  54741283 tgttcaacctttacttttctatccgatgtgagacatataattcacacttgcacacaaca 54741341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 23556963 - 23557024
Alignment:
Q  69 ttataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacaca 130  Q
    ||||||| |||||||||||||||||||||| | |||| | |||| ||||| |||||| ||||    
T  23556963 ttataaaatgttcaacctccacttttctatccgatgtaaaacatttaactcacacttgcaca 23557024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 2740773 - 2740693
Alignment:
Q  55 ataggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    ||||||| ||| | ||||||  ||||||||||  ||| |||||| | ||||| ||||||||||| |||||| |||||||||    
T  2740773 ataggtcctcttacttataaggtgttcaacctttactgttctatccgatgtgggacatataactcacacttgcacacaaca 2740693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 7147746 - 7147794
Alignment:
Q  77 tgttcaacctccacttttctatacaatgtgagacatataactgacactt 125  Q
    |||||||||||||||||||||  ||||||||||| | ||||| ||||||    
T  7147746 tgttcaacctccacttttctaagcaatgtgagacttctaactcacactt 7147794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 30313229 - 30313169
Alignment:
Q  77 tgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaat 137  Q
    |||||||||||||||||||||| | ||||||||||||||||  || ||| |||||||||||    
T  30313229 tgttcaacctccacttttctatccgatgtgagacatataacacacgcttgcacacaacaat 30313169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 33561539 - 33561616
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    |||| ||||| ||||||| |||| |||||||||||||||||   |||||  |||||||||| |||||| |||||||||    
T  33561539 ggtcctctcacttataaagtgtttaacctccacttttctatctgatgtggaacatataactcacacttgcacacaaca 33561616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 29874119 - 29874170
Alignment:
Q  66 caattataaattgttcaacctccacttttctatacaatgtgagacatataac 117  Q
    |||||||||| ||||||||||||||||||||||   ||||| ||||||||||    
T  29874119 caattataaagtgttcaacctccacttttctatctgatgtgggacatataac 29874170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 30323537 - 30323455
Alignment:
Q  55 ataggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaat 137  Q
    ||||||| ||||| || |||| ||||||||||||| ||||||||   || || ||||||||||  |||||| |||||||||||    
T  30323537 ataggtcctctcacttctaaagtgttcaacctccaattttctatctgatttgggacatataacacacacttgcacacaacaat 30323455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 962668 - 962591
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    |||| ||||| ||||||  ||||||||||  |||||||||| | ||||| ||||||||||| |||||| || ||||||    
T  962668 ggtcctctcacttataaggtgttcaacctttacttttctatccgatgtgggacatataactcacacttgcatacaaca 962591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 13154480 - 13154521
Alignment:
Q  69 ttataaattgttcaacctccacttttctatacaatgtgagac 110  Q
    ||||||| |||||||||||||||||||||  |||||||||||    
T  13154480 ttataaagtgttcaacctccacttttctaagcaatgtgagac 13154521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 33953859 - 33953936
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaaca 135  Q
    |||| ||||| ||||| | ||||||||||||||||||||||   ||||| ||| ||||||| ||| || |||||||||    
T  33953859 ggtcctctcacttatatagtgttcaacctccacttttctatctgatgtgggacttataactcacatttgcacacaaca 33953936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 3594277 - 3594341
Alignment:
Q  69 ttataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaa 133  Q
    ||||||| ||||| |||||||||||||||| |  ||||| ||||| |||| |||||| |||||||    
T  3594277 ttataaagtgttcgacctccacttttctattcgttgtgaaacatacaactcacactttcacacaa 3594341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 29873636 - 29873704
Alignment:
Q  69 ttataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaat 137  Q
    ||||||| ||||||||||||||||||||||   ||||| ||||| ||||  || ||| |||||||||||    
T  29873636 ttataaaatgttcaacctccacttttctatctgatgtgggacatgtaacacacccttgcacacaacaat 29873704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 41678455 - 41678534
Alignment:
Q  58 ggtcttctcaattataaattgttcaacctccacttttctatacaatgtgagac--atataactgacacttacacacaaca 135  Q
    |||| ||||| ||||||| |||| ||||||| |||||||||   |||||||||  |||||||| |||||| |||||||||    
T  41678455 ggtcctctcacttataaagtgtttaacctccccttttctatctgatgtgagacatatataactcacacttgcacacaaca 41678534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 39903 - 39828
Alignment:
Q  63 tctcaattataaattgttcaacctccacttttctatacaatgtgagacatataactgacacttacacacaacaatt 138  Q
    ||||| |||||||  || ||||| |||||||||||| | ||||| ||||||||||| ||||||  |||||||||||    
T  39903 tctcacttataaagagtccaaccaccacttttctatccgatgtgggacatataactcacacttgaacacaacaatt 39828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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