View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10787_low_7 (Length: 392)

Name: NF10787_low_7
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10787_low_7
NF10787_low_7
[»] chr3 (19 HSPs)
chr3 (1-390)||(8406036-8406425)
chr3 (1-222)||(5331643-5331864)
chr3 (1-223)||(52787647-52787871)
chr3 (1-223)||(52793866-52794090)
chr3 (1-220)||(7047757-7047976)
chr3 (1-220)||(13282256-13282475)
chr3 (1-223)||(41283824-41284046)
chr3 (31-223)||(30760713-30760905)
chr3 (1-185)||(31167561-31167745)
chr3 (1-223)||(4606583-4606806)
chr3 (1-223)||(13276042-13276265)
chr3 (9-159)||(41720081-41720232)
chr3 (1-223)||(55346614-55346834)
chr3 (88-223)||(16865390-16865525)
chr3 (1-223)||(19007619-19007841)
chr3 (1-219)||(39233022-39233237)
chr3 (1-159)||(18096080-18096241)
chr3 (58-159)||(29453498-29453599)
chr3 (88-159)||(49846517-49846587)
[»] chr5 (10 HSPs)
chr5 (1-390)||(37504911-37505300)
chr5 (1-223)||(24077368-24077590)
chr5 (1-223)||(6618347-6618570)
chr5 (1-223)||(6920552-6920775)
chr5 (88-223)||(8807192-8807326)
chr5 (52-223)||(19520960-19521132)
chr5 (1-223)||(42379242-42379469)
chr5 (21-223)||(23101651-23101852)
chr5 (1-49)||(10378129-10378177)
chr5 (1-49)||(29692077-29692125)
[»] chr7 (17 HSPs)
chr7 (1-390)||(37567812-37568201)
chr7 (1-223)||(9195506-9195728)
chr7 (1-223)||(27087848-27088071)
chr7 (1-223)||(27190230-27190453)
chr7 (4-223)||(44279229-44279448)
chr7 (1-223)||(2133687-2133909)
chr7 (1-223)||(20948320-20948542)
chr7 (1-223)||(34381391-34381614)
chr7 (1-223)||(11564435-11564657)
chr7 (1-223)||(40667123-40667352)
chr7 (1-223)||(26924834-26925058)
chr7 (4-223)||(48565912-48566130)
chr7 (1-223)||(27749664-27749881)
chr7 (119-223)||(20537040-20537144)
chr7 (1-184)||(38189644-38189826)
chr7 (103-219)||(26642544-26642659)
chr7 (18-223)||(221749-221955)
[»] chr2 (20 HSPs)
chr2 (1-390)||(32037052-32037442)
chr2 (1-223)||(20283363-20283584)
chr2 (1-223)||(38975245-38975466)
chr2 (1-223)||(36554856-36555078)
chr2 (1-223)||(30728121-30728342)
chr2 (12-223)||(1857708-1857919)
chr2 (1-159)||(37917936-37918095)
chr2 (1-177)||(37861301-37861476)
chr2 (1-223)||(45166939-45167159)
chr2 (107-222)||(22336196-22336310)
chr2 (1-159)||(2979701-2979859)
chr2 (1-150)||(29198865-29199015)
chr2 (107-223)||(45168673-45168789)
chr2 (16-222)||(747035-747240)
chr2 (108-220)||(29198662-29198773)
chr2 (1-159)||(1928677-1928835)
chr2 (107-223)||(25740394-25740508)
chr2 (93-159)||(11913854-11913920)
chr2 (10-44)||(25739886-25739920)
chr2 (1-46)||(45168828-45168873)
[»] chr4 (26 HSPs)
chr4 (1-335)||(30301353-30301686)
chr4 (1-223)||(7315290-7315512)
chr4 (1-223)||(8087726-8087948)
chr4 (1-223)||(40630882-40631105)
chr4 (1-222)||(7882408-7882630)
chr4 (1-223)||(22459956-22460178)
chr4 (1-185)||(21357787-21357973)
chr4 (21-223)||(9390241-9390444)
chr4 (30-223)||(28510408-28510601)
chr4 (1-156)||(44234671-44234827)
chr4 (25-223)||(3006173-3006372)
chr4 (1-159)||(29350944-29351102)
chr4 (1-177)||(18103691-18103866)
chr4 (1-185)||(56208252-56208436)
chr4 (1-159)||(36968411-36968570)
chr4 (88-223)||(22453021-22453156)
chr4 (97-185)||(31989607-31989695)
chr4 (1-223)||(6807838-6808062)
chr4 (88-223)||(18691581-18691715)
chr4 (1-159)||(12689599-12689753)
chr4 (21-185)||(41548376-41548538)
chr4 (88-184)||(18665513-18665610)
chr4 (1-79)||(19509637-19509715)
chr4 (1-45)||(18665637-18665681)
chr4 (163-219)||(23918712-23918768)
chr4 (89-185)||(43140910-43141004)
[»] chr8 (16 HSPs)
chr8 (1-223)||(26849172-26849395)
chr8 (1-223)||(37806880-37807103)
chr8 (4-223)||(20162560-20162779)
chr8 (4-223)||(20194717-20194936)
chr8 (1-223)||(43204239-43204462)
chr8 (1-223)||(21257773-21257996)
chr8 (4-223)||(4860054-4860275)
chr8 (1-219)||(30591993-30592211)
chr8 (1-222)||(34322707-34322928)
chr8 (91-222)||(28713954-28714084)
chr8 (91-222)||(28721301-28721431)
chr8 (91-222)||(28728943-28729073)
chr8 (1-158)||(32776862-32777019)
chr8 (1-222)||(39679457-39679678)
chr8 (1-219)||(39154189-39154407)
chr8 (21-142)||(40672638-40672760)
[»] scaffold0087 (1 HSPs)
scaffold0087 (1-223)||(8530-8752)
[»] chr6 (13 HSPs)
chr6 (1-223)||(23306265-23306487)
chr6 (1-222)||(26631229-26631451)
chr6 (1-222)||(26737204-26737426)
chr6 (1-223)||(4582076-4582306)
chr6 (1-156)||(16802188-16802342)
chr6 (1-223)||(29730513-29730732)
chr6 (1-111)||(25359637-25359747)
chr6 (1-159)||(28329896-28330051)
chr6 (1-159)||(28507532-28507687)
chr6 (1-71)||(30800412-30800483)
chr6 (1-35)||(1389731-1389765)
chr6 (1-49)||(927298-927346)
chr6 (1-41)||(14629018-14629058)
[»] chr1 (14 HSPs)
chr1 (1-223)||(14752527-14752748)
chr1 (1-223)||(27275887-27276109)
chr1 (1-223)||(28728852-28729074)
chr1 (1-220)||(20360558-20360777)
chr1 (1-220)||(20550193-20550412)
chr1 (10-185)||(44700027-44700201)
chr1 (1-163)||(44773531-44773693)
chr1 (1-223)||(9196056-9196279)
chr1 (1-153)||(7880031-7880183)
chr1 (88-222)||(17171323-17171455)
chr1 (1-223)||(49535829-49536049)
chr1 (1-157)||(48187572-48187727)
chr1 (1-45)||(23832958-23833002)
chr1 (88-148)||(33334686-33334745)
[»] scaffold0048 (2 HSPs)
scaffold0048 (1-219)||(46897-47115)
scaffold0048 (9-223)||(73505-73722)
[»] scaffold0294 (1 HSPs)
scaffold0294 (91-223)||(13317-13449)
[»] scaffold1147 (1 HSPs)
scaffold1147 (9-207)||(405-604)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-222)||(24733-24954)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-117)||(1794-1911)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-222)||(10930-11149)
[»] scaffold0084 (1 HSPs)
scaffold0084 (1-215)||(4041-4249)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 8406036 - 8406425
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  8406036 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttaaaaaaataagggaaaggttt 8406135  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406136 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 8406235  T
Q  201 ataatacaaaattccaattttagccctaacctaatttcatctcattctaacgattcatttcactgtaactgtgcacgctctctcttctcccgacggcgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406236 ataatacaaaattccaattttagccctaacctaatttcatctcattctaacgattcatttcactgtaactgtgcacgctctctcttctcccgacggcgac 8406335  T
Q  301 gtgaatggcgatctcaacctgaatggcggcgaacggcggcgagcggcggagaaggaagttgaacaacacagtttccttcatctcactcga 390  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8406336 gtgaatggcgatctcaacctgaacggcggcgaacggcggcgagcggcggagaaggaagttgaacaacacagtttccttcatctctctcga 8406425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5331643 - 5331864
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    ||||||| ||||| |||||||||||||| |||| || |||||||||||| ||  || |||||||||||||| |||||||        |||||||||||||    
T  5331643 ttgtttgcgagttaggttttggaggggaggggaagggaaggaaaggcttatggatggtaaacccttgtttgcgagttttaaaaaaacaagggaaaggttt 5331742  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| || |||| || || ||||   |    
T  5331743 tggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaaatgacaattttgccctctta 5331842  T
Q  201 ataatacaaaattccaatttta 222  Q
    ||||| ||||||||||||||||    
T  5331843 ataattcaaaattccaatttta 5331864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52787871 - 52787647
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnnt-aagggaaaggt 98  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| || |||| ||||||||||||||||||||||         |||||||| ||    
T  52787871 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggtaaacccttgtttgtgagttttaaaaaaaccaagggaaatgt 52787772  T
Q  99 tttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    ||||||||||||||||||| || |||| |||||||||| ||||||||||| ||||| |||||||| |||||||| |||| ||||||| || || ||||      
T  52787771 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattgggaggttttggggggttaaacatacaaattgacaattttgccctct 52787672  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| |||||||||||||||||    
T  52787671 taataattcaaaattccaattttag 52787647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52794090 - 52793866
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnnt-aagggaaaggt 98  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| || |||| ||||||||||||||||||||||         |||||||| ||    
T  52794090 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggtaaacccttgtttgtgagttttaaaaaaaccaagggaaatgt 52793991  T
Q  99 tttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    ||||||||||||||||||| || |||| |||||||||| ||||||||||| ||||| |||||||| |||||||| |||| ||||||| || || ||||      
T  52793990 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattgggaggttttggggggttaaacatacaaattgacaattttgccctct 52793891  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| |||||||||||||||||    
T  52793890 taataattcaaaattccaattttag 52793866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 7047757 - 7047976
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    ||||||| |||||||||||||||||||| || | || |||||||||||   ||||| |||||||||||||| |||||||        ||||||| |||||    
T  7047757 ttgtttgcgagttgggttttggaggggagggaaagggaaggaaaggctatggagtggtaaacccttgtttgcgagttttaaaaaaacaagggaagggttt 7047856  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||||||||| || ||||  ||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || ||  |||   |    
T  7047857 tggggggttttgaagggtttcatttgcccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgtcctctta 7047956  T
Q  201 ataatacaaaattccaattt 220  Q
    ||||| ||||||||||||||    
T  7047957 ataattcaaaattccaattt 7047976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 13282475 - 13282256
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||| ||||||| |||| ||||||||||||||| || |||| ||||||||| |||| |||||||        ||||||||||||    
T  13282475 ttgtttgcgagttggattttagaggggaggggaaggaaaggaaaggcttatggagtg-taaacccttatttgcgagttttaaaaaaacaagggaaaggtt 13282377  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| || ||||  |||| ||||||| || || ||||       
T  13282376 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttgggggattaaccatacaaattgacaattttgccctctt 13282277  T
Q  200 aataatacaaaattccaattt 220  Q
    |||||| ||||||||||||||    
T  13282276 aataattcaaaattccaattt 13282256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41283824 - 41284046
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||| ||| || | || ||||||||||| || |||||||       |||||||||||||    
T  41283824 ttgtttgcgagttgggttttggaggggaggggaggggaaggaaagacttatggaatggtaaacccttgtctgcgagttttaaaaaaataagggaaaggtt 41283923  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| || | || |||| | |||||||| |||| ||||||| || ||||||| |     
T  41283924 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaatt-gaggattttagggggttaaacatacaaattgacaattttaccctcat 41284022  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| ||||||| ||| |||||    
T  41284023 aataattcaaaatttcaaatttag 41284046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 223
Target Start/End: Complemental strand, 30760905 - 30760713
Alignment:
Q  31 ggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaaggggttaatttatcc 129  Q
    |||||| |||||||||||| || |||| |||||||||||||| |||||||        |||||||| ||||||||||||||||||||| ||||||| |||    
T  30760905 ggaggggaaggaaaggcttatggagtg-taaacccttgtttgcgagttttaaaaaaacaagggaaatgttttggggggttttgaagggcttaatttgtcc 30760807  T
Q  130 aattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaaattccaattttag 223  Q
    ||||||| ||||| ||||| |||||||||||||| |||||||| |||| ||||||| || || |||| |  ||||| ||||||| |||||||||    
T  30760806 aattttaaagttctcccaaattggggggttttggggggttaaacatacaaattgacaattttgccctcatgataattcaaaatttcaattttag 30760713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 31167745 - 31167561
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    |||||||  |||||| |||||||||||| |||| || |||||||||||| || |||| ||| |||||||||| |||||||        |||||||| |||    
T  31167745 ttgtttgcaagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaagggaaatgtt 31167647  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgac 185  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| |||||||    
T  31167646 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgac 31167561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4606806 - 4606583
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||  |||||||||||| |||| || |||||||||||| || |||| ||| ||||||||||  ||||||        ||||||||||||    
T  4606806 ttgtttgcgagttgaattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcaagttttaaaaatacaagggaaaggtt 4606708  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggg-gttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||  |||||| |||||||| |||| ||||||| || || ||||      
T  4606707 ttggggggttttgaagggcttaatttgtccaattttaaagttcccccaaattgggggatttttggggggttaaacatacaaattgacaattttgccctct 4606608  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||  |||||||||||||||||    
T  4606607 taataactcaaaattccaattttag 4606583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13276042 - 13276265
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||||||||||  |||||||||||| |||| || ||||||| |||| || |||| ||| ||||||||||  ||||||        ||||||||||||    
T  13276042 ttgtttgggagttgaattttggaggggaggggaagggaaggaaaagcttatggagtggtaa-cccttgtttgcaagttttaaaaaaacaagggaaaggtt 13276140  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtttt-ggagggttaaagatacgaattgaccatattaccctta 198  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||||| |||| ||||||| || |||||||| |||| ||||||| || || ||||      
T  13276141 ttggggggttttgaagggtttaatttgtccaattttaaagttcccccaaattggagggttttgggggggttaaacatacaaattgacaattttgccctct 13276240  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| ||||||| |||||||||    
T  13276241 taataattcaaaatttcaattttag 13276265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 41720232 - 41720081
Alignment:
Q  9 gagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttgggggg 107  Q
    |||||||||||||||||||| || | || |||||||||||| | ||||| ||||| ||||||||||||||||        ||||||||| ||||||||||    
T  41720232 gagttgggttttggaggggagggtaagggaaggaaaggcttatagagtggtaaactcttgtttgtgagttttaaaaaaacaagggaaagattttgggggg 41720133  T
Q  108 ttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
    |||||||||| || |||| || ||||||| ||||||||||| ||||||||||    
T  41720132 ttttgaagggcttcatttgtctaattttaaagttcccccaaattggggggtt 41720081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 55346614 - 55346834
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||| ||||||| | ||||||||||| ||| ||| |||| | ||||| ||||| |||||||| |||||||        ||  ||||||||    
T  55346614 ttgtttgcgagttgagttttgg-gaggaagggaggggaagcaaaagcttatagagtggtaaactcttgtttgcgagttttaaaaaaacaaacgaaaggtt 55346712  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    ||||||||| |||||||| || |||| |||||||||| ||||||||||| ||||| |||||||  |||||||| |||| ||||||| || || |||| |     
T  55346713 ttggggggtcttgaagggcttcatttgtccaattttaaagttcccccaaattgggaggttttg--gggttaaacatacaaattgacaattttgccctcat 55346810  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| ||||||| |||||||||    
T  55346811 aataattcaaaatttcaattttag 55346834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 16865390 - 16865525
Alignment:
Q  88 aagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaa--agatacgaattgac 185  Q
    |||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||  | | || |||||||    
T  16865390 aagggaaaggttttggggggttttgaaggg-ttcatttgtccaattttaaagttcccccaaattggggggttttgg-gggttaaccatacacaaattgac 16865487  T
Q  186 catattacccttacaataatacaaaattccaattttag 223  Q
     || || |||| | |||||| |||||||||||||||||    
T  16865488 aattttgccctcataataattcaaaattccaattttag 16865525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19007841 - 19007619
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||||||||||||  || || |||| |||||||||||| || || | |||||||||||||| ||| |||        ||||||||||||    
T  19007841 ttgtttgcgagttgggttttggagatgagggtaggggaaggaaaggcttatggagaggtaaacccttgtttgggagctttaaaaaaacaagggaaaggtt 19007742  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |  | ||||||||||||| || |||| |||||||||| |||||||| || ||| |||||||||| ||| |||| |||| ||||||| || || || | |     
T  19007741 tcagcgggttttgaagggtttcatttgtccaattttaaagttccccgaaattgaggggttttgg-gggctaaacatacaaattgacaattttgccgtcat 19007643  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  19007642 aataattcaaaattccaattttag 19007619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39233237 - 39233022
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| ||  ||||||||||| || || | |||||||||||||| |||||||        | ||||||||||    
T  39233237 ttgtttgcgagttggattttggaggggaggggaaggggaggaaaggcttatggagaggtaaacccttgtttgagagttttaaaaaacca-gggaaaggtt 39233139  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    ||||||| |||||||||| || |||| || ||||||| ||||||||||| ||   ||||||| |||||||||| |||| ||||||| || ||| ||| |     
T  39233138 ttggggg-ttttgaagggcttcatttgtcaaattttaaagttcccccaaatt--agggtttttgagggttaaacatacaaattgacaattttatcctcat 39233042  T
Q  200 aataatacaaaattccaatt 219  Q
    |||||| ||||||| |||||    
T  39233041 aataattcaaaatttcaatt 39233022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 18096080 - 18096241
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnnta--agggaaagg 97  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||| || || || | |||||| ||||||| ||||||         |  |||||||||    
T  18096080 ttgtttgcgagttgggttttggagggggagggaggggaaggaaaggtttatggagaggtaaacctttgtttgcgagtttaaaaaaaaaacaagggaaagg 18096179  T
Q  98 ttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
     ||||||||||||||||||| || |||| |||||||||| ||||||||||| |||| |||||    
T  18096180 atttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggagggtt 18096241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 29453599 - 29453498
Alignment:
Q  58 taaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttgggggg 157  Q
    |||||||||||||| |||||||        |||||||| ||||| ||||||||||||||| || |||| |||||||||| ||||||||||| ||||||||    
T  29453599 taaacccttgtttgcgagttttaaaaaaacaagggaaaagtttttgggggttttgaagggcttcatttgtccaattttaaagttcccccaaattgggggg 29453500  T
Q  158 tt 159  Q
    ||    
T  29453499 tt 29453498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 49846517 - 49846587
Alignment:
Q  88 aagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
    |||| |||||||||||||||||||||| || || |||| |||||||||| ||||||  ||| ||||||||||    
T  49846517 aaggaaaaggttttggggggttttgaa-ggtttcatttgtccaattttaaagttccttcaaattggggggtt 49846587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 37505300 - 37504911
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  37505300 ttgtttgggagttgggttttggaggggaagggaggggaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttaaaaaaataagggaaaggttt 37505201  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37505200 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 37505101  T
Q  201 ataatacaaaattccaattttagccctaacctaatttcatctcattctaacgattcatttcactgtaactgtgcacgctctctcttctcccgacggcgac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37505100 ataatacaaaattccaattttagccctaacctaatttcatctcattctaacgattcatttcactataactgtgcacgctctctcttctcccgacggcgac 37505001  T
Q  301 gtgaatggcgatctcaacctgaatggcggcgaacggcggcgagcggcggagaaggaagttgaacaacacagtttccttcatctcactcga 390  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37505000 gtgaatggcgatctcaacctgaacggcggcgaacggcggcgagcggcggagaaggaagttgaacaacacagtttccttcatctctctcga 37504911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24077590 - 24077368
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| || |||||||||||| || |||| ||| |||||||||| |||||||        ||||||||||||    
T  24077590 ttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttacaaaaacaagggaaaggtt 24077492  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||       
T  24077491 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctt 24077392  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  24077391 aataattcaaaattccaattttag 24077368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6618347 - 6618570
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| || | || ||||||||| || || |||| |||||||||||||| |||||||        ||||||||||||    
T  6618347 ttgtttgcgagttggattttggaggggagggaaagggaaggaaaggtttatggagtggtaaacccttgtttgcgagttttaaaaaaacaagggaaaggtt 6618446  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| |||| ||||||||| | |||||| |||| ||||||| || || ||||       
T  6618447 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggagggttttggggagttaaacatacaaattgacaattttgccctctt 6618546  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  6618547 aataattcaaaattccaattttag 6618570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6920552 - 6920775
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaa-gggaaaggt 98  Q
    ||||||| ||||||| ||||| ||||||  |||  | |||||||||||| || |||| |||| |||||||||||||||||        || |||||||||    
T  6920552 ttgtttgcgagttggattttgaaggggagaggaatggaaggaaaggcttatggagtggtaaatccttgtttgtgagttttaaaaaaacaaagggaaaggt 6920651  T
Q  99 tttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    |||| |||||||||||||| || |||| |||||||||| ||||||||||| || ||||||||||| |||||||| |||| ||||||| || || ||||      
T  6920652 tttgaggggttttgaagggcttcatttgtccaattttaaagttcccccaaatt-gggggttttggggggttaaacatacaaattgacaattttgccctct 6920750  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| |||||||||||||||||    
T  6920751 taataattcaaaattccaattttag 6920775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 8807192 - 8807326
Alignment:
Q  88 aagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgacca 187  Q
    ||||||||||||||||| |||||||||||| || |||| || ||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| |    
T  8807192 aagggaaaggttttgggcggttttgaagggcttcatttgtcaaattttaaagttcccccaaattggggggttttgg-gggttaaacatacaaattgacaa 8807290  T
Q  188 tattacccttacaataatacaaaattccaattttag 223  Q
    | || ||||   |||||| |||||||||||||||||    
T  8807291 ttttgccctcttaataattcaaaattccaattttag 8807326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 19521132 - 19520960
Alignment:
Q  52 gagtgctaaacccttgtttgtgagttttnnnnnnn-taagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatt 150  Q
    ||||| ||||||||||||||||||||||        |||||||||| |||||||||||||||||||| || |||| |||||||||| | |||||| || |    
T  19521132 gagtggtaaacccttgtttgtgagttttaaaaaaaataagggaaagattttggggggttttgaagggattcatttgtccaattttaaaattcccctaaat 19521033  T
Q  151 tggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaaattccaattttag 223  Q
    |||| |||||| |||||||||| |||  ||||||| || || || | | |||||| |||||||||||||||||    
T  19521032 tgggaggttttagagggttaaacatataaattgacaattttgccttcataataattcaaaattccaattttag 19520960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42379242 - 42379469
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || ||||||||| || || |||| |||| |||||||||||||||||        ||||||||| ||    
T  42379242 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggtttatggagtggtaaatccttgtttgtgagttttaaaaaaacaagggaaagatt 42379341  T
Q  100 ttgggg-----ggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacc 194  Q
    ||||||     |||||||||| | || |||| |||||||||| ||||||||||| || ||||||||||| |||||||| |||| ||||  | || || ||    
T  42379342 ttgggggggggggttttgaagagcttcatttgtccaattttaaagttcccccaaattagggggttttgg-gggttaaacatacaaattaccaattttgcc 42379440  T
Q  195 cttacaataatacaaaattccaattttag 223  Q
    ||   |||||| |||||||||||||||||    
T  42379441 ctcttaataattcaaaattccaattttag 42379469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 23101852 - 23101651
Alignment:
Q  21 ggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaaggggt 119  Q
    |||||||| |||| || |||||||||||| || |||| |||||| ||||||| |||||||       ||||||||||||||||| ||||||||||||  |    
T  23101852 ggaggggaggggaagggaaggaaaggcttatggagtggtaaacc-ttgtttgcgagttttaaaaaaataagggaaaggttttggcgggttttgaaggact 23101754  T
Q  120 taatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaaattccaatt 219  Q
    | |||| |||||||||| | |||||| || |||||||||||||| |||||||| |||| ||||||| || ||  |||   |||||| |||||||||||||    
T  23101753 tcatttgtccaattttaaaattcccctaaattggggggttttgg-gggttaaacatacaaattgacaattttgtcctcttaataattcaaaattccaatt 23101655  T
Q  220 ttag 223  Q
    ||||    
T  23101654 ttag 23101651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10378177 - 10378129
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggctt 49  Q
    ||||||| ||||||| ||||||||||||||||| || ||||||||||||    
T  10378177 ttgtttgcgagttggattttggaggggaagggaagggaaggaaaggctt 10378129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29692125 - 29692077
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggctt 49  Q
    ||||||| ||||||||||||||| ||||||||| || ||||||||||||    
T  29692125 ttgtttgcgagttgggttttggaagggaagggaagggaaggaaaggctt 29692077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 37567812 - 37568201
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||    
T  37567812 ttgtttgggagttgggttttggaggggaggggagggaaaggaaaggtttgtgagtgctaaacccttgtttgtgagttttaaaaaaacaagggaaaggttt 37567911  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  37567912 tggggggttttgaaggggttaatttgtccaattttagagttcccccaatttggggggttttggagggttaaagatgcaaattgaccatattacccttaca 37568011  T
Q  201 ataatacaaaattccaattttagccctaacctaatttcatctcattctaacgattcatttcactgtaactgtgcacgctctctcttctcccgacggcgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37568012 ataatacaaaattccaattttagccctaacctaatttcatctcattctaacgattcatttcactgtaactgtgcacgctctctcttctcccgacggcgac 37568111  T
Q  301 gtgaatggcgatctcaacctgaatggcggcgaacggcggcgagcggcggagaaggaagttgaacaacacagtttccttcatctcactcga 390  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  37568112 gtgaatggcgatctcaacctgaacggcggcgaacggcggcgagcggcggagaaggaagctgaacaacacagtttccttcatctctctcga 37568201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9195728 - 9195506
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| || |||| ||||||||||||||||||||||        ||||||||||||    
T  9195728 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtg-taaacccttgtttgtgagttttaaaaaaacaagggaaaggtt 9195630  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| || ||||||||||| |||||||| |||| ||||||| || || ||||       
T  9195629 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattagggggttttggggggttaaacatacaaattgacaattttgccctctt 9195530  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  9195529 aataattcaaaattccaattttag 9195506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27088071 - 27087848
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| | || || ||||||| |||| || |||| |||||||||||||| |||||||       |||||||||||||    
T  27088071 ttgtttgcgagttgggttttggaggggaggagaagggaaggaaaagcttatggagtggtaaacccttgtttgcgagttttaaaaaaataagggaaaggtt 27087972  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| |||||||| || |||||||||||||  |||||||| |||| ||||||| || || ||||       
T  27087971 ttggggggttttgaagggcttcatttgtccaattttaaagttccccaaaattggggggttttgtggggttaaacatacaaattgacaattttgccctctt 27087872  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  27087871 aataattcaaaattccaattttag 27087848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27190230 - 27190453
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| | || || ||||||| |||| || |||| |||||||||||||| |||||||       |||||||||||||    
T  27190230 ttgtttgcgagttgggttttggaggggaggagaagggaaggaaaagcttatggagtggtaaacccttgtttgcgagttttaaaaaaataagggaaaggtt 27190329  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| |||||||| || |||||||||||||  |||||||| |||| ||||||| || || ||||       
T  27190330 ttggggggttttgaagggcttcatttgtccaattttaaagttccccaaaattggggggttttgtggggttaaacatacaaattgacaattttgccctctt 27190429  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  27190430 aataattcaaaattccaattttag 27190453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 44279229 - 44279448
Alignment:
Q  4 tttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttg 102  Q
    |||| ||||||||||||| |||| ||||||||| |||||||||||| || |||| |||||||||||||| |||||||        || ||||||||||||    
T  44279229 tttgcgagttgggttttgaagggaaagggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggttttg 44279328  T
Q  103 gggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaat 202  Q
    |||| |||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||  ||||||| || || |||| | |||    
T  44279329 ggggattttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttgg-gggttaaacatataaattgacaattttgccctcataat 44279427  T
Q  203 aatacaaaattccaattttag 223  Q
    ||| |||||||| ||||||||    
T  44279428 aattcaaaattctaattttag 44279448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2133909 - 2133687
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||||||||||  ||||| |||||| |||| || |||||||||||| || |||| ||| ||||||||||  ||||||        ||||||||||||    
T  2133909 ttgtttgggagttgaattttgaaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcaagttttaaaaaaacaagggaaaggtt 2133811  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||||| |||| ||||||||| |||||||| |||| ||||||| || || ||||       
T  2133810 ttggggggttttgaagggtttaatttgtccaattttaaagttcccccaaattggagggttttggggggttaaacatactaattgacaattttgccctctt 2133711  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  2133710 aataattcaaaattccaattttag 2133687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20948320 - 20948542
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||| |||||||||||||||||| || |||||||||||| || |||| |||| ||||||||| |||||||        ||||||||||||    
T  20948320 ttgtttgcgagttgagttttggaggggaagggaagggaaggaaaggcttatggagtggtaaatccttgtttgcgagttttaaaaaaacaagggaaaggtt 20948419  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||| ||||||||||| || |||| |||||||||| | ||||||||| ||||| |||||||| |||||||| |||| ||||||| || || | || |     
T  20948420 ttgggg-gttttgaagggcttcatttgtccaattttaaaattcccccaaattgggaggttttggggggttaaacatacaaattgacaattttgctctcat 20948518  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  20948519 aataattcaaaattccaattttag 20948542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34381614 - 34381391
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| ||||||||| || |||| || ||||||||| || || |||| |||| | ||||||| |||||||        ||||||||||||    
T  34381614 ttgtttgcgagttggattttggaggagaggggaagggaaggaaaggtttatggagtggtaaatctttgtttgcgagttttaaaaaaacaagggaaaggtt 34381515  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| |||| ||||||||| |||||||| |||| ||||||| || |||||||       
T  34381514 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggagggttttggggggttaaacatacaaattgacaattttaccctctt 34381415  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  34381414 aataattcaaaattccaattttag 34381391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11564657 - 11564435
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    ||||||| ||||||||||||||| |||| ||||  | |||||||||||   ||||| ||||| ||||||||  ||||||        ||||||||| |||    
T  11564657 ttgtttgcgagttgggttttggaagggaggggaacggaaggaaaggctatggagtggtaaactcttgtttgcaagttttaaaaaaacaagggaaagattt 11564558  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||   |    
T  11564557 tggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctta 11564458  T
Q  201 ataatacaaaattccaattttag 223  Q
    ||||| |||||||||||||||||    
T  11564457 ataattcaaaattccaattttag 11564435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40667352 - 40667123
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| ||||||||||||||||| |  |||||||| ||| || |||| |||||||||||||| |||||||        ||||||||||||    
T  40667352 ttgtttgcgagttggattttggaggggaagggaagagaaggaaagacttatggagtggtaaacccttgtttgcgagttttaacaaaacaagggaaaggtt 40667253  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaattt------ggggggttttggagggttaaagatacgaattgaccatattac 193  Q
    ||||| |||||||||||| || |||| || ||||||| ||||||||||| ||      |||||| |||||||||||||| |||| ||||||| || || |    
T  40667252 ttgggaggttttgaagggcttcatttgtcaaattttaaagttcccccaaattgggggggggggggtttggagggttaaacatacaaattgacaattttgc 40667153  T
Q  194 ccttacaataatacaaaattccaattttag 223  Q
    ||||| |||||| |||||||||||||||||    
T  40667152 ccttataataattcaaaattccaattttag 40667123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26925058 - 26924834
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtga-gtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    |||||||  |||||| |||||||||||| |||| || || ||||||||| ||| ||| ||||||||||||||  ||||||        ||||||||||||    
T  26925058 ttgtttgcaagttggattttggaggggaggggaagggaatgaaaggcttatgaagtggtaaacccttgtttgccagttttaaaaaaacaagggaaaggtt 26924959  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggg-gggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    |||||||||||||||||| || |||| || ||||||| ||||||||||| ||||| ||||||||| |||||||| |||| ||||||| || || ||||      
T  26924958 ttggggggttttgaagggcttcatttgtcaaattttaaagttcccccaaattgggagggttttggggggttaaacatacaaattgacaattttgccctct 26924859  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| |||||||||||||||||    
T  26924858 taataattcaaaattccaattttag 26924834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 48565912 - 48566130
Alignment:
Q  4 tttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttg 102  Q
    |||| ||||||| |||||||||||| |||| || ||| |||||||| || |||| ||||||||||||||||||||||       ||||||||| ||||||    
T  48565912 tttgtgagttggattttggaggggaggggaaggtaagaaaaggcttatggagtg-taaacccttgtttgtgagttttaaaaaaataagggaaaagttttg 48566010  T
Q  103 gggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaat 202  Q
    ||||||||||||||| || |||| |||||||||| |||| | |||| || ||||||||||| || ||||| |||| ||||||| || || ||||   |||    
T  48566011 gggggttttgaagggcttcatttgtccaattttaaagtttctccaaatt-gggggttttgggggattaaacatacaaattgacaattttgccctcttaat 48566109  T
Q  203 aatacaaaattccaattttag 223  Q
    ||| |||||||||||||||||    
T  48566110 aattcaaaattccaattttag 48566130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27749881 - 27749664
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||  ||||| |||||||||||     ||||||||||| || |||| |||||||||||||| |||||||        |||||||| |||    
T  27749881 ttgtttgcgagttgaattttgaaggggaaggga-----aggaaaggcttatggagtg-taaacccttgtttgcgagttttaaaaaaacaagggaaaagtt 27749788  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || ||||||||||||||| |||||||| || |||||||||||||| |||||||| |||| ||||||| || || ||||       
T  27749787 ttggggggttttgaagggtttcatttatccaattttaaagttcccctaaattggggggttttggggggttaaacatacaaattgacaattttgccctctt 27749688  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||| ||||||||    
T  27749687 aataattcaaaattcaaattttag 27749664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 20537040 - 20537144
Alignment:
Q  119 ttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaaattccaat 218  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||   |||||| ||||||| ||||    
T  20537040 ttaatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaatttcaat 20537139  T
Q  219 tttag 223  Q
    |||||    
T  20537140 tttag 20537144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 38189644 - 38189826
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| | ||||| |||||||||||| ||||||  ||||||| |||| || || | ||||||||||||||  ||||||        || |||||||||    
T  38189644 ttgtttgcgtgttggattttggaggggaggggaggataaggaaatgcttatggagaggtaaacccttgtttgcaagttttaaacaaacaaaggaaaggtt 38189743  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattga 184  Q
    |||||||| ||||||||| || |||| |||||||||| |||| |||||| ||||||| ||||||  ||||||| |||| ||||||    
T  38189744 ttgggggg-tttgaagggcttcatttgtccaattttaaagtt-ccccaaattgggggattttgggaggttaaacatacaaattga 38189826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 26642544 - 26642659
Alignment:
Q  103 gggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaat 202  Q
    ||||||||||||||| || |||| |||||||||| ||||||||||| ||| | |||||||| |||||||| |||| ||||||| || ||  ||| | |||    
T  26642544 gggggttttgaagggcttcatttgtccaattttaaagttcccccaaattgagaggttttgg-gggttaaacatacaaattgacaattttgtcctcataat 26642642  T
Q  203 aatacaaaattccaatt 219  Q
    ||| ||||||| |||||    
T  26642643 aattcaaaatttcaatt 26642659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 221749 - 221955
Alignment:
Q  18 tttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaagg 116  Q
    ||||||||| | || |||| ||||||||||||||| |||| ||||  ||||||||  ||||||        |||||| | ||||||||||||||||||||    
T  221749 tttggagggaagggaaggggaaggaaaggcttgtggagtggtaaattcttgtttgcaagttttaaaaaaacaagggataagttttggggggttttgaagg 221848  T
Q  117 ggttaatttat-ccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaaattcc 215  Q
      ||||||| |  |||||||| | ||||  ||| ||||||| |||||| |||||||| |||| ||||||| || || ||||    ||||| |||||||||    
T  221849 tcttaatttgtaacaatttta-aattccttcaaattgggggattttggggggttaaacatacaaattgacaattttgccctcgtcataattcaaaattcc 221947  T
Q  216 aattttag 223  Q
    ||||||||    
T  221948 aattttag 221955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 32037052 - 32037442
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||    
T  32037052 ttgtttgggagttgggttttggaggggaggggagggaaaggaaaggtttgtgagtgctaaacccttgtttgtgagttttaaaaaaacaagggaaaggttt 32037151  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttgggg-ggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  32037152 tggggggttttgaaggggttaatttgtccaattttagagttcccccaatttgggggggttttggagggttaaagatgcaaattgaccatattacccttac 32037251  T
Q  200 aataatacaaaattccaattttagccctaacctaatttcatctcattctaacgattcatttcactgtaactgtgcacgctctctcttctcccgacggcga 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32037252 aataatacaaaattccaattttagccctaacctaatttcatctcattctaacgattcatttcactgtaactgtgcacgctctctcttctcccgacggcga 32037351  T
Q  300 cgtgaatggcgatctcaacctgaatggcggcgaacggcggcgagcggcggagaaggaagttgaacaacacagtttccttcatctcactcga 390  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  32037352 cgtgaatggcgatctcaacctgaacggcggcgaacggcggcgagcggcggagaaggaagctgaacaacacagtttccttcatctctctcga 32037442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20283363 - 20283584
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    ||||||| ||||||||||||| |||||| |||| || ||||||||||||  ||||| ||||||||||||||||||||||        |||||||||||||    
T  20283363 ttgtttgtgagttgggttttgaaggggaggggaagggaaggaaaggcttaggagtggtaaacccttgtttgtgagttttaaaaaaacaagggaaaggttt 20283462  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||| ||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||  ||||||  || || ||||   |    
T  20283463 tggggggttttaaagggcttcatttgtccaattttaaagttcccccaaattggggggttttgg-gggttaaacatataaattgataattttgccctctta 20283561  T
Q  201 ataatacaaaattccaattttag 223  Q
    ||||| |||||||||||||||||    
T  20283562 ataattcaaaattccaattttag 20283584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38975245 - 38975466
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| || |||| ||| |||||||||| |||||||        ||||||||||||    
T  38975245 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaagggaaaggtt 38975343  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| ||||||||||||||||||| || || ||||||||||  |||||||| |||| ||||||| || |||||||       
T  38975344 ttggggggttttgaagggcttcatttgtccaattttagagttcccctaaatt-gggggttttgaggggttaaacatacaaattgacaattttaccctctt 38975442  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||  ||||||||    
T  38975443 aataattcaaaattttaattttag 38975466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36554856 - 36555078
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaag-ggaaaggt 98  Q
    ||||||| ||||||  |||||||||||| || | ||||||||||||||| || |||| ||||||||||||||||||||||       |||| |||||| |    
T  36554856 ttgtttgcgagttgaattttggaggggagggaaaggaaaggaaaggcttatggagtggtaaacccttgtttgtgagttttaaaaaaataagaggaaagtt 36554955  T
Q  99 tttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    ||||||||||||||||||| || |||| |||||||||| |||| ||| ||||  ||||||||||| |||||||| |||| ||||||| || || ||||      
T  36554956 tttggggggttttgaagggcttcatttgtccaattttaaagtttcccaaatt--gggggttttggggggttaaacatacaaattgacaattttgccctct 36555053  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| |||||||||||||||||    
T  36555054 taataattcaaaattccaattttag 36555078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30728342 - 30728121
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| || |||||||||||| || |||| ||| |||||||||| |||||||        ||||||||||||    
T  30728342 ttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaagggaaaggtt 30728244  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||| | || |||| |||||||||| ||||||||||| || ||||||||||| |||||||| |||| ||||||  || ||  ||||      
T  30728243 ttggggggttttgaagagcttcatttgtccaattttaaagttcccccaaatttgggggttttgg-gggttaaacatacaaattgataattttgtcctttt 30728145  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  30728144 aataattcaaaattccaattttag 30728121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 1857919 - 1857708
Alignment:
Q  12 ttgggttttggaggggaagggagggaaaggaaaggcttgtga-gtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttt 110  Q
    ||||||||||||||| ||  ||||| |||||||||||| ||| ||| ||||| ||| |||| |||||||       ||| |||||| |||||||||||||    
T  1857919 ttgggttttggagggaaaaagaggggaaggaaaggcttatgaagtggtaaactcttatttgcgagttttaaaaaaataaaggaaagtttttggggggttt 1857820  T
Q  111 tgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaa 210  Q
    ||||| | || |||| |||||||||| ||||||||||| || |||| |||||| |||||||| |||| ||||||| || || |||| | |||||| ||||    
T  1857819 tgaagagcttcatttgtccaattttaaagttcccccaaattcgggg-ttttggggggttaaacatacaaattgacaattttgccctcataataattcaaa 1857721  T
Q  211 attccaattttag 223  Q
    |||||||||||||    
T  1857720 attccaattttag 1857708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 37918095 - 37917936
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| || |||||||||||| || |||| |||||||||| ||| |||||||        ||||||||||||    
T  37918095 ttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaaacccttgcttgcgagttttaaaaaaacaagggaaaggtt 37917996  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
    |||||||||||||||||| || |||| || ||||||| ||||||||||| ||||||||||    
T  37917995 ttggggggttttgaagggcttcatttgtctaattttaaagttcccccaaattggggggtt 37917936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 37861301 - 37861476
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||| ||||||||||| ||||||| |||||||| ||| || || | |||||||||||||| |||||||       || ||||||||||    
T  37861301 ttgtttgcgagttgggatttggaggggaggggaggggaaggaaagacttatggagaggtaaacccttgtttgagagtttttaaaaaata-gggaaaggtt 37861399  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatac 177  Q
    ||||||| |||||||||| || |||| |||||||||| |||| |||||| ||||||||||||| ||||||||| ||||    
T  37861400 ttgggggtttttgaagggcttcatttgtccaattttaaagtt-ccccaaattggggggttttgaagggttaaacatac 37861476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45166939 - 45167159
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||||||||||||||||  ||| || || ||||||||| || |||| ||||||||| |||| |||||||        || |||||||||    
T  45166939 ttgtttgcgagttgggttttggaggggagaggaagggaatgaaaggcttatggagtggtaaacccttatttgcgagttttaaaaaaacaaaggaaaggtt 45167038  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||| ||||||||||| || |||| |||||||||| |||||||| ||||  |||||||||||  || |||| |||| ||||||| || || ||||       
T  45167039 ttgggg-gttttgaagggtttcatttgtccaattttaaagttccccaaatt--gggggttttgggaggataaacatacaaattgacaattttgccctctt 45167135  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  45167136 aataattcaaaattccaattttag 45167159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 22336310 - 22336196
Alignment:
Q  107 gttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataata 206  Q
    ||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||   ||||||     
T  22336310 gttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttgg-gggttaaacatacaaattgacaattttgccctcttaataatt 22336212  T
Q  207 caaaattccaatttta 222  Q
    ||||||||||||||||    
T  22336211 caaaattccaatttta 22336196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 2979701 - 2979859
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||||||||||| |||| || | || |||||||| ||| || ||| | ||||||||||||| |||||||        ||||||||||||    
T  2979701 ttgtttgcgagttgggttttggaagggagggaaagggaaggaaagacttatggagt-caaaacccttgtttgcgagttttaaaaaaacaagggaaaggtt 2979799  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
    |||||||||||||||||| || |||| |||||||||| ||||||| ||| ||| ||||||    
T  2979800 ttggggggttttgaagggcttcatttgtccaattttaaagttccctcaaattgaggggtt 2979859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 29199015 - 29198865
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| || ||||||| |||| || ||||  || |||||||||| |||||||        ||||||||||||    
T  29199015 ttgtttgcgagttggattttggaggggaggggaagggaaggaaatgcttatggagtgtaaaccccttgtttgcgagttttaaaaaaacaagggaaaggtt 29198916  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatt 150  Q
    |||| ||||||||||||| || |||| ||||||||||  ||||||| ||||    
T  29198915 ttggagggttttgaagggcttcatttgtccaattttaatgttccccaaatt 29198865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 45168789 - 45168673
Alignment:
Q  107 gttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataata 206  Q
    |||||||| || || |||| | |||||||| ||||||||||| || ||||| ||||||| ||||||  ||| ||||||| || || |||||| ||||||     
T  45168789 gttttgaatggcttcatttgttcaattttaaagttcccccaaattaggggggtttggagagttaaacctacaaattgacaattttgcccttataataatt 45168690  T
Q  207 caaaattccaattttag 223  Q
    |||||||||||||||||    
T  45168689 caaaattccaattttag 45168673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 747035 - 747240
Alignment:
Q  16 gttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaa 114  Q
    ||||||||||||| |||| || |||||||||||| || |||| |||||| ||||||| | |||||        |||| ||| ||||||||| ||||||||    
T  747035 gttttggaggggaggggaagggaaggaaaggcttatggagtggtaaacctttgtttgcgggttttaaaaaaacaaggaaaatgttttgggg-gttttgaa 747133  T
Q  115 ggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaaattc 214  Q
    ||| || |||| |||||||||| |||| ||| || |||||||| ||||| | |||||| |||| ||||||| || || ||||   ||| || ||||||||    
T  747134 gggtttcatttgtccaattttaaagtttccctaaattgggggg-tttggggcgttaaacatacaaattgacaattttgccctcttaatgattcaaaattc 747232  T
Q  215 caatttta 222  Q
    ||||||||    
T  747233 caatttta 747240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 29198662 - 29198773
Alignment:
Q  108 ttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatac 207  Q
    |||||||||| || |||| |||||||||| |||||||| |||| || ||||||||| |||||||| |||| ||||||| || ||| |||   |||||| |    
T  29198662 ttttgaagggttttatttgtccaattttaaagttccccaaatt-ggagggttttggggggttaaatatacaaattgacaattttatcctcttaataattc 29198760  T
Q  208 aaaattccaattt 220  Q
    |||||||||||||    
T  29198761 aaaattccaattt 29198773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 1928677 - 1928835
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| | |||| |||| |||||||| ||| |||||||||||||||| || |  | ||||| |||||||| |||||||       || | ||||||||    
T  1928677 ttgtttgcgggttgagtttcggaggggaggggtgggaaaggaaaggcttatggaaaggtaaactcttgtttgggagttttaaaaaaata-gagaaaggtt 1928775  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
    ||| ||| |||||||||| || |||| |||||||||| ||||||||||| || |||||||    
T  1928776 ttgagggattttgaagggcttcatttgtccaattttaaagttcccccaaattagggggtt 1928835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 25740394 - 25740508
Alignment:
Q  107 gttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataata 206  Q
    ||||| ||||| || |||| |||||||||| |||||||| ||||  ||||||||| | |||||||| |||| ||||||| || ||  ||| | | ||||     
T  25740394 gttttaaagggcttcatttgtccaattttaaagttccccaaatt--gggggtttttgggggttaaacatacaaattgacaattttgtcctcatattaatt 25740491  T
Q  207 caaaattccaattttag 223  Q
    |||||||||||||||||    
T  25740492 caaaattccaattttag 25740508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 11913854 - 11913920
Alignment:
Q  93 aaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
    |||||||||| |||||||||||||| || |||| |||||||||| |||| ||  || ||||||||||    
T  11913854 aaaggttttgtggggttttgaagggttttatttgtccaattttaaagtttccttaaattggggggtt 11913920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 25739886 - 25739920
Alignment:
Q  10 agttgggttttggaggggaagggagggaaaggaaa 44  Q
    ||||||| |||||||||||||||||||||||||||    
T  25739886 agttggggtttggaggggaagggagggaaaggaaa 25739920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45168873 - 45168828
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaagg 46  Q
    ||||||| |||||||||||||||||||| ||||||| |||| ||||    
T  45168873 ttgtttgcgagttgggttttggaggggaggggaggggaagggaagg 45168828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 30301686 - 30301353
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||        || ||||||||||    
T  30301686 ttgtttgggagttgggttttggaggggaggggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttaaaaaaacaaaggaaaggttt 30301587  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  30301586 tggggggttttgatggggttaatttgtccaattttagagttcccccaatttggggg-ttttggagggttaaagatacaaattgaccatattacccttaca 30301488  T
Q  201 ataatacaaaattccaattttagccctaacctaatttcatctcattctaacgattcatttcactgtaactgtgcacgctctctcttctcccgacggcgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  30301487 ataatacaaaattccaattttagccctaacctaatttcatctcattctaacgactcatttcactgtaactgtgcacgctctcttttctcccgacggcgac 30301388  T
Q  301 gtgaatggcgatctcaacctgaatggcggcgaacg 335  Q
    ||||||||||||||||||||||| |||||||||||    
T  30301387 gtgaatggcgatctcaacctgaacggcggcgaacg 30301353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7315512 - 7315290
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    ||||||| |||||||||||||||||||| |||| || ||||||| | ||  ||||| ||||||||||||||||||||||        |||||||||||||    
T  7315512 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaacgtttaggagtggtaaacccttgtttgtgagttttaaaaaaacaagggaaaggttt 7315413  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||   |    
T  7315412 tggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctta 7315313  T
Q  201 ataatacaaaattccaattttag 223  Q
    ||||| |||||||||||||||||    
T  7315312 ataattcaaaattccaattttag 7315290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8087948 - 8087726
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||||||||||  |||||||||||| |||| ||||||||||||||| || |||| ||| ||||||||||| ||||||        || |||||||||    
T  8087948 ttgtttgggagttgaattttggaggggaggggaaggaaaggaaaggcttatggagtggtaa-cccttgtttgtaagttttaaaaaaacaaaggaaaggtt 8087850  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||       
T  8087849 ttggggggttttgaagggcttaatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctt 8087750  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  8087749 aataattcaaaattccaattttag 8087726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40630882 - 40631105
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnnt-aagggaaaggt 98  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| || |||| ||||||||||||||| ||||||         |||||||||||    
T  40630882 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtg-taaacccttgtttgtaagttttaaaaaaaacaagggaaaggt 40630980  T
Q  99 tttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    ||||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||      
T  40630981 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctct 40631080  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| ||||||| |||||||||    
T  40631081 taataattcaaaatttcaattttag 40631105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7882630 - 7882408
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| || |||||||||||| || |||| ||||| ||||||||||||||||        || |||||||||    
T  7882630 ttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaaactcttgtttgtgagttttaaaaaaacaaaggaaaggtt 7882531  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||| ||| |||||||||||||| |||||||| |||| ||||||| || || | ||       
T  7882530 ttggggggttttgaagggcttcatttgtccaattttaaagttccctcaaattggggggttttggggggttaaacatacaaattgacaattttgctctctt 7882431  T
Q  200 aataatacaaaattccaatttta 222  Q
    |||||| ||||||||||||||||    
T  7882430 aataattcaaaattccaatttta 7882408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22460178 - 22459956
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| || |||||||| ||| || |||| ||| |||||||||| |||||||        ||||||||||||    
T  22460178 ttgtttgagagttggattttggaggggaggggaagggaaggaaagacttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaagggaaaggtt 22460080  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||       
T  22460079 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctt 22459980  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||  | |||||||||||||||    
T  22459979 aataaatctaaattccaattttag 22459956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 21357973 - 21357787
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnnt-aagggaaaggt 98  Q
    ||||||| ||||||||||||||||||||  |||||| |||||||||||| || || | |||||||||||||| |||||||         |||||||||||    
T  21357973 ttgtttgcgagttgggttttggaggggagcggaggggaaggaaaggcttatggagaggtaaacccttgtttgggagttttaaaaaaaacaagggaaaggt 21357874  T
Q  99 tttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgac 185  Q
    |||||||||||| |||||| ||| ||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| |||||||    
T  21357873 tttggggggtttagaagggcttattttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgac 21357787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 9390241 - 9390444
Alignment:
Q  21 ggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaaggggt 119  Q
    ||||||||||||| || ||| ||||| || | ||||| |||||||||||||| |||||||        |||||||| ||||||||||||||||||||| |    
T  9390241 ggaggggaagggaagggaagtaaaggtttattgagtggtaaacccttgtttgcgagttttaaaaaaacaagggaaatgttttggggggttttgaagggct 9390340  T
Q  120 taatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaaattccaatt 219  Q
    | |||| |||||||||| ||||||||||| ||||||| |||||| |||||||| |||| ||||||| || || ||||   |||||| |||||||||||||    
T  9390341 tcatttgtccaattttaaagttcccccaaattgggggattttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaattccaatt 9390440  T
Q  220 ttag 223  Q
    ||||    
T  9390441 ttag 9390444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 28510408 - 28510601
Alignment:
Q  30 gggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaaggggttaatttatc 128  Q
    ||||||| |||||||||||| || |||| |||||||||||||| |||||||        |||||||| ||||||||||||||||||||| || |||| ||    
T  28510408 gggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaatcaagggaaatgttttggggggttttgaagggcttcatttgtc 28510507  T
Q  129 caattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaaattccaattttag 223  Q
    |||||||| ||||||||||| |||||||||||| || ||||||| |||  ||||||| || || ||||   |||||| |||||||||||||||||    
T  28510508 caattttaaagttcccccaaattggggggtttt-gaaggttaaacatataaattgacaattttgccctcttaataattcaaaattccaattttag 28510601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 44234827 - 44234671
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| || |||| |||||| ||||||| |||||||        ||||||||||||    
T  44234827 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggtaaacctttgtttgcgagttttaaaaaaacaagggaaaggtt 44234728  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggg 156  Q
    | |||||||||||||||| || |||| |||||||||| ||||||||||| |||||||    
T  44234727 taggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggg 44234671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 3006372 - 3006173
Alignment:
Q  25 gggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaaggggttaat 123  Q
    ||||| ||| ||||||||||||||| || |||| ||||||||||||||||| ||||        |||||||| ||||||  ||||||||||||| || ||    
T  3006372 gggaaaggaaggaaaggaaaggcttatggagtggtaaacccttgtttgtgaattttaaaaaaacaagggaaatgttttgaagggttttgaagggcttcat 3006273  T
Q  124 ttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatacaaaattccaattttag 223  Q
    || |||||||||| ||||||||||| |||||||||||||  |||||||| |||| ||||||| || || ||||   |||||| |||||||| ||||||||    
T  3006272 ttgtccaattttaaagttcccccaaattggggggttttgaggggttaaacatacaaattgacaattttgccctcttaataattcaaaattcaaattttag 3006173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 29350944 - 29351102
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| | ||||| ||||||||||||||||||||||        ||||||||||||    
T  29350944 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtg-taaacccttgtttgtgagttttaaaaaaacaagggaaaggtt 29351042  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
    |||||||||||||||||  || |||| |||||||| | ||||||||||| || |||||||    
T  29351043 ttggggggttttgaaggacttcatttgtccaatttgaaagttcccccaaattagggggtt 29351102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 18103691 - 18103866
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||| ||||||||||| ||||||| |||||||| ||| || || | |||||||||||||| |||||||       || ||||||||||    
T  18103691 ttgtttgcgagttgggatttggaggggaggggaggggaaggaaagacttatggagaggtaaacccttgtttgagagtttttaaaaaata-gggaaaggtt 18103789  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatac 177  Q
    ||||||| |||||||||| || |||| |||||||||| |||| |||||| ||||||||||||| ||||||||| ||||    
T  18103790 ttgggggtttttgaagggcttcatttgtccaattttaaagtt-ccccaaattggggggttttgaagggttaaacatac 18103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 56208436 - 56208252
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| ||||| ||||||||||| || || |||||| || || |||| ||| |||||||||| |||||||        ||||||||||||    
T  56208436 ttgtttgcgagttggattttgaaggggaagggaagggaatgaaaggtttatggagtggtaa-cccttgtttgcgagttttaaaaatacaagggaaaggtt 56208338  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgac 185  Q
    |||||||||||||||||| || |||| |||||||||| |||||| |||| ||||||| |||||| |||||||| |||| |||||||    
T  56208337 ttggggggttttgaagggcttcatttgtccaattttaaagttcctccaaattgggggattttggggggttaaacatacaaattgac 56208252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 36968411 - 36968570
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggctt-gtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    |||||||||||||||||||||||||||| |||| || ||||||||||||  ||| || |||||| ||||||| |||||||        | ||||||||||    
T  36968411 ttgtttgggagttgggttttggaggggaggggaagggaaggaaaggcttattgaatggtaaaccattgtttgcgagttttaaaaaaacatgggaaaggtt 36968510  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
    || ||||| ||||||||| ||  ||| |||||||||| |||| |||||| ||||||||||    
T  36968511 tttgggggctttgaagggcttcgtttgtccaattttaaagtttccccaaattggggggtt 36968570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 22453156 - 22453021
Alignment:
Q  88 aagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgacca 187  Q
    ||||| |||||||||||||||||||||||| || |||| || | ||||| |||| |||||| |||| ||||||||| |||||||| |||| ||||||| |    
T  22453156 aaggggaaggttttggggggttttgaagggtttcatttgtctagttttaaagtttccccaaattggagggttttggggggttaaacatacaaattgacaa 22453057  T
Q  188 tattacccttacaataatacaaaattccaattttag 223  Q
    | ||  |||   |||||| |||||||||||||||||    
T  22453056 ttttgtcctcttaataattcaaaattccaattttag 22453021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 31989607 - 31989695
Alignment:
Q  97 gttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgac 185  Q
    ||||||||||||||||||||| || |||| |||||||||| ||||||||||| || | ||||||||| |||||||| |||| |||||||    
T  31989607 gttttggggggttttgaagggtttcatttgtccaattttaaagttcccccaaattagagggttttggggggttaaacatacaaattgac 31989695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6807838 - 6808062
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||  |||||||||||| |||| || |||||||| ||| || |||| ||||| |||||||| || ||||        ||||||||||||    
T  6807838 ttgtttgcgagttgaattttggaggggaggggaagggaaggaaagacttatggagtggtaaactcttgtttgcgaattttaaaaaaacaagggaaaggtt 6807937  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttg-gagggttaaagatacgaattgaccatattaccctta 198  Q
    ||  || ||||||||| | || |||| |||||||||| ||||||||||| ||||| ||||||| | ||||| || |||| ||||||  || || ||||      
T  6807938 ttatggtgttttgaagtgcttcatttgtccaattttaaagttcccccaaattgggaggttttgcgggggttgaacatacaaattgataattttgccctct 6808037  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| |||||||||||||||||    
T  6808038 taataattcaaaattccaattttag 6808062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 18691715 - 18691581
Alignment:
Q  88 aagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgacca 187  Q
    |||||||||||| |||||| |||| ||||| || |||| || ||||||| |||||| |||| || || |||||||| |||||||| |||| ||||||| |    
T  18691715 aagggaaaggttatggggg-ttttaaagggtttcatttgtcaaattttaaagttcctccaaatttggaggttttggggggttaaacatactaattgacaa 18691617  T
Q  188 tattacccttacaataatacaaaattccaattttag 223  Q
    | || |||| | |||||| |||||||||||||||||    
T  18691616 ttttgccctcataataattcaaaattccaattttag 18691581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 12689753 - 12689599
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||||||||     |||||| | || | ||||| |||||||||||||| |||||||        ||||||||| ||    
T  12689753 ttgtttgcgagttgggttttggaggggaaggga-----aggaaatgtttattgagtggtaaacccttgtttgcgagttttaaaaaaacaagggaaagatt 12689659  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
    |||| |||||||||| || || |||| |||||||||| ||||||||||| ||| ||||||    
T  12689658 ttggagggttttgaaaggcttcatttgtccaattttaaagttcccccaaattgaggggtt 12689599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 41548376 - 41548538
Alignment:
Q  21 ggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaaggggt 119  Q
    |||||||| ||||||| | ||||||||||||| || | |||||||||||||| |||||||        | |||||| ||||||||||||||||||||  |    
T  41548376 ggaggggaggggaggggagggaaaggcttgtggagaggtaaacccttgtttgggagttttaaaaaaaca-gggaaaagttttggggggttttgaaggact 41548474  T
Q  120 taatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgac 185  Q
    | |||| |||||||||  ||||||||||| || ||||||||||| |||||||| |||| |||||||    
T  41548475 tcatttgtccaatttttaagttcccccaaatt-gggggttttgg-gggttaaacatacaaattgac 41548538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 18665610 - 18665513
Alignment:
Q  88 aagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtttt--ggagggttaaagatacgaattga 184  Q
    ||||||||||||||||||| |||| ||||| || |||| |||||||||| ||||||||||| ||||| ||||||  || |||||||| |||| ||||||    
T  18665610 aagggaaaggttttgggggttttt-aagggcttcatttgtccaattttaaagttcccccaaattgggaggttttagggggggttaaacatacaaattga 18665513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 19509637 - 19509715
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagtttt 79  Q
    ||||||| ||||||| |||||| ||||| |||| ||||||||||||||| | ||||| |||||||||||||| |||||||    
T  19509637 ttgtttgcgagttggattttggtggggaggggaaggaaaggaaaggcttatggagtg-taaacccttgtttgcgagtttt 19509715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18665681 - 18665637
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaag 45  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||    
T  18665681 ttgtttgcgagttgggttttggaggggaatggaggggaaggaaag 18665637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 23918712 - 23918768
Alignment:
Q  163 gagggttaaagatacgaattgaccatattacccttacaataatacaaaattccaatt 219  Q
    ||||||||||||||| |||| || || ||||||||||||||||  |||||| |||||    
T  23918712 gagggttaaagatacaaatttacaattttacccttacaataatttaaaatttcaatt 23918768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 43141004 - 43140910
Alignment:
Q  89 agggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgac 185  Q
    ||||||| |||||||||| ||||||| || || |||| |||||||||| ||||| ||||| || | ||||||||| || ||||| |||| |||||||    
T  43141004 agggaaaagttttggggg-ttttgaaaggcttcatttgtccaattttaaagttctcccaaatt-gagggttttgggggattaaacatacaaattgac 43140910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26849172 - 26849395
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||| || |||| |||||||||||||  |||||||        ||||||||||||    
T  26849172 ttgtttgcgagttgggttttggaggggaagggaggggaaggaaaggcttatggagtggtaaacccttgtttccgagttttaaaaaaagaagggaaaggtt 26849271  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| |||| |||||| |||| ||||||||| |||||||| |||| ||||||| || || |||| |     
T  26849272 ttggggggttttgaagggcttcatttgtccaattttaaagtttccccaaattggagggttttggggggttaaacatacaaattgacaattttgccctcat 26849371  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  26849372 aataattcaaaattccaattttag 26849395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37807103 - 37806880
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| | ||||| |||||| |||||||||||||||        ||||||||||||    
T  37807103 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatagagtggtaaacctttgtttgtgagttttaaaaaaacaagggaaaggtt 37807004  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| |||||| |||| |||||||||||||| |||||||| |||| ||||||  || || ||||       
T  37807003 ttggggggttttgaagggcttcatttgtccaattttaaagttcctccaaattggggggttttggggggttaaacatacaaattgataattttgccctctt 37806904  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  37806903 aataattcaaaattccaattttag 37806880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 20162779 - 20162560
Alignment:
Q  4 tttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttg 102  Q
    |||| ||||||||||||| |||| ||||||||| |||||||||||| || |||| |||||||||||||| |||||||        || ||||||||||||    
T  20162779 tttgcgagttgggttttgaagggaaagggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggttttg 20162680  T
Q  103 gggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaat 202  Q
    |||| |||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||  ||||||| || || |||| | |||    
T  20162679 ggggattttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttgg-gggttaaacatataaattgacaattttgccctcataat 20162581  T
Q  203 aatacaaaattccaattttag 223  Q
    ||| |||||||| ||||||||    
T  20162580 aattcaaaattctaattttag 20162560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 20194717 - 20194936
Alignment:
Q  4 tttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttg 102  Q
    |||| ||||||||||||| |||| ||||||||| |||||||||||| || |||| |||||||||||||| |||||||        || ||||||||||||    
T  20194717 tttgcgagttgggttttgaagggaaagggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggttttg 20194816  T
Q  103 gggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaat 202  Q
    |||| |||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||  ||||||| || || |||| | |||    
T  20194817 ggggattttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttgg-gggttaaacatataaattgacaattttgccctcataat 20194915  T
Q  203 aatacaaaattccaattttag 223  Q
    ||| |||||||| ||||||||    
T  20194916 aattcaaaattctaattttag 20194936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43204239 - 43204462
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||||||| || |||| |||| ||||||||| |||||||        ||||||||||||    
T  43204239 ttgtttgcgagttgggttttggaggggaggggaaggaaaggaaaggcttatggagtggtaaatccttgtttgcgagttttaaaaaaacaagggaaaggtt 43204338  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| |||||| |||| ||| |||||||||| | |||||| |||| |||||||  | || ||||       
T  43204339 ttggggggttttgaagggtttcatttgtccaattttaaagttcctccaaattgaggggttttggggagttaaacatacaaattgacatttttgccctctt 43204438  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||| ||||||||    
T  43204439 aataattcaaaattctaattttag 43204462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 21257773 - 21257996
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnnt-aagggaaaggt 98  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||||| || |||| |||||||||||||| |||||||         ||  || || |    
T  21257773 ttgtttgcgagttgggttttggaggggaagggaggggaagaaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaaacaaatgatagat 21257872  T
Q  99 tttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    |||||| |||||||||||| || |||| |||||||||| ||||||||||| |||||||||||| |||||||||| |||| ||||||| || || |||| |    
T  21257873 tttgggaggttttgaagggtttcatttgtccaattttaaagttcccccaacttggggggtttt-gagggttaaacatacaaattgacaattttgccctca 21257971  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| |||||||||||||||||    
T  21257972 taataattcaaaattccaattttag 21257996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 4860275 - 4860054
Alignment:
Q  4 tttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgt-ttgtgagttttnnnnnnntaagggaaaggtttt 101  Q
    |||| |||||||||||||||||||| | || || |||||||||||| || |||| ||||||||||| ||| |||||||        |||| |||||||||    
T  4860275 tttgtgagttgggttttggaggggaggagaagggaaggaaaggcttatggagtggtaaacccttgtgttgcgagttttaaaaaaacaaggaaaaggtttt 4860176  T
Q  102 ggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaa 201  Q
    |||||||||||||||| || |||| |||||||||| ||||||||||| || ||||||||||| |||||||| |||| ||||||| || ||  |||   ||    
T  4860175 ggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattcgggggttttggggggttaaacatacaaattgacaattttgtcctcttaa 4860076  T
Q  202 taatacaaaattccaattttag 223  Q
    |||| | |||||||||||||||    
T  4860075 taattcgaaattccaattttag 4860054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 30592211 - 30591993
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| ||||||| |||||||||||| || || | | |||||||||||| |||||||        |||| |||||||    
T  30592211 ttgtttgcgagttggtttttggaggggaggggaggggaaggaaaggcttatggagaggttaacccttgtttgggagttttaaaaaaacaagg-aaaggtt 30592113  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    | ||||||||||||| || ||||||| | |||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || ||  ||| |     
T  30592112 tcggggggttttgaacggcttaatttgtacaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgtcctcat 30592013  T
Q  200 aataatacaaaattccaatt 219  Q
    |||||| ||||||| |||||    
T  30592012 aataattcaaaatttcaatt 30591993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34322707 - 34322928
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| |  |||||||||||| || |||| ||||||||||||||||||||||        ||||||||||||    
T  34322707 ttgtttgcgagttgggttttggaggggaggggaagagaaggaaaggcttatggagtg-taaacccttgtttgtgagttttaaaagaacaagggaaaggtt 34322805  T
Q  100 ttgggg-ggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    |||||| |||||||||||| || |||| |||||||||| |||| |||| || | ||||||||| || ||||||| |||| ||||||| || || ||||      
T  34322806 ttgggggggttttgaagggcttcatttgtccaattttaaagtt-cccctatattgggggttttagaaggttaaacatacaaattgacaattttgccctct 34322904  T
Q  199 caataatacaaaattccaatttta 222  Q
     |||||| ||||||||||||||||    
T  34322905 taataattcaaaattccaatttta 34322928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 28713954 - 28714084
Alignment:
Q  91 ggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatat 190  Q
    ||||| ||||||||||||||||||||  || |||| |||||||||| ||||||||||| ||| |||||||||| |||||||| |||| ||||||| || |    
T  28713954 ggaaatgttttggggggttttgaaggacttcatttgtccaattttaaagttcccccaaattgaggggttttgg-gggttaaacatacaaattgacaattt 28714052  T
Q  191 tacccttacaataatacaaaattccaatttta 222  Q
    | |||||| |||||| ||||||||||||||||    
T  28714053 tgcccttataataattcaaaattccaatttta 28714084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 28721301 - 28721431
Alignment:
Q  91 ggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatat 190  Q
    ||||| ||||||||||||||||||||  || |||| |||||||||| ||||||||||| ||| |||||||||| |||||||| |||| ||||||| || |    
T  28721301 ggaaatgttttggggggttttgaaggacttcatttgtccaattttaaagttcccccaaattgaggggttttgg-gggttaaacatacaaattgacaattt 28721399  T
Q  191 tacccttacaataatacaaaattccaatttta 222  Q
    | |||||| |||||| ||||||||||||||||    
T  28721400 tgcccttataataattcaaaattccaatttta 28721431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 28728943 - 28729073
Alignment:
Q  91 ggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatat 190  Q
    ||||| ||||||||||||||||||||  || |||| |||||||||| ||||||||||| ||| |||||||||| |||||||| |||| ||||||| || |    
T  28728943 ggaaatgttttggggggttttgaaggacttcatttgtccaattttaaagttcccccaaattgaggggttttgg-gggttaaacatacaaattgacaattt 28729041  T
Q  191 tacccttacaataatacaaaattccaatttta 222  Q
    | |||||| |||||| ||||||||||||||||    
T  28729042 tgcccttataataattcaaaattccaatttta 28729073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 32777019 - 32776862
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||||||| | ||||| ||||||||| |||| |||||||        ||| ||||||||    
T  32777019 ttgtttgcgagttgggttttggaggggaggggaggggaaggaaaggcttatggagtggtaaacccttctttgcgagttttaaaaaaacaagagaaaggtt 32776920  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggt 158  Q
    || ||||||||||||||| || |||| | |||||||| ||||||||||| |||||||||    
T  32776919 tt-gggggttttgaagggcttcatttgttcaattttaaagttcccccaaattggggggt 32776862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39679457 - 39679678
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||||||||| |||| | | || || |||||| ||||| || |||| ||||| |||||||| |||||||       |||||||||||||    
T  39679457 ttgtttgcgagttgggttttgaaggg-aggagaagggaaggaatggcttatggagtggtaaactcttgtttgcgagttttaaaaaaataagggaaaggtt 39679555  T
Q  100 ttgggg-ggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    |||||| |||||||||||| || |||| |||||||||| ||||| ||||| || ||||||||| | |||||||| |||| ||||||| || || ||||      
T  39679556 ttgggggggttttgaagggcttcatttgtccaattttaaagttctcccaaatt-gggggttttagggggttaaacatacaaattgacaattttgccctct 39679654  T
Q  199 caataatacaaaattccaatttta 222  Q
     |||||| ||||||||||||||||    
T  39679655 taataattcaaaattccaatttta 39679678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 39154189 - 39154407
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    |||||||||||||||||||||||| ||| ||||||| ||| ||| |||| || || | |||||| ||||||| |||||||        | || |||||||    
T  39154189 ttgtttgggagttgggttttggagaggaggggaggggaagaaaatgcttatggagaggtaaaccattgtttgggagttttaaaaaaacatgg-aaaggtt 39154287  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||| ||||  || |||| |||||||||| ||||||||||| ||||| |||||||| | |||||| |||| ||| ||| || ||| ||| |     
T  39154288 ttggggggttttaaaggacttcatttgtccaattttaaagttcccccaaattgggaggttttggggagttaaacataccaatagacaattttatcctcat 39154387  T
Q  200 aataatacaaaattccaatt 219  Q
     ||||| |||||||||||||    
T  39154388 gataattcaaaattccaatt 39154407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 40672638 - 40672760
Alignment:
Q  21 ggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggttttgaaggggt 119  Q
    |||||||| || |||| ||||||||||||||| ||||  |||| |||||||| |||||||        |||||||||||||||| ||||||||||| | |    
T  40672638 ggaggggagggaaggggaaggaaaggcttgtggagtggaaaactcttgtttgagagttttaaaaaaacaagggaaaggttttggagggttttgaagcgtt 40672737  T
Q  120 taatttatccaattttagagttc 142  Q
    | |||| |||||||||| |||||    
T  40672738 tcatttgtccaattttaaagttc 40672760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8530 - 8752
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtgagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttt 100  Q
    ||||||| |||| ||||||||||||||| |||| || ||||||||||||  ||||| ||||||||||||||||||||||        |||||||||||||    
T  8530 ttgtttgtgagtcgggttttggaggggaggggaagggaaggaaaggcttaggagtggtaaacccttgtttgtgagttttcaaaaaacaagggaaaggttt 8629  T
Q  101 tggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttaca 200  Q
    ||||||||||||||||| || |||| |||||||||| || |||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||   |    
T  8630 tggggggttttgaagggcttcatttgtccaattttaaagatcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctta 8729  T
Q  201 ataatacaaaattccaattttag 223  Q
    ||||| |||||||| ||||||||    
T  8730 ataattcaaaattcaaattttag 8752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23306487 - 23306265
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||  |||||||||||| |||| || |||||||||||| || |||| ||| ||||||||||  ||||||        ||||||||||||    
T  23306487 ttgtttgcgagttgaattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcaagttttaaaaaaacaagggaaaggtt 23306389  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||       
T  23306388 ttggggggttttgaagggcttaatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctt 23306289  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  23306288 aataattcaaaattccaattttag 23306265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26631451 - 26631229
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||  || |||||||||||| || |||| |||||||||||||| |||||||        || |||||||||    
T  26631451 ttgtttgcgagttgggttttggaggggagggggagggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggtt 26631352  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    ||||||||||||||| || || ||||||||||||||| ||||||||||| |||| || |||||| |||||||| |||| ||||||| || || ||||       
T  26631351 ttggggggttttgaacggcttcatttatccaattttaaagttcccccaaattggaggattttggggggttaaacatacaaattgacaattttgccctctt 26631252  T
Q  200 aataatacaaaattccaatttta 222  Q
    |||||| ||| ||||||||||||    
T  26631251 aataattcaacattccaatttta 26631229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26737426 - 26737204
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||  || |||||||||||| || |||| |||||||||||||| |||||||        || |||||||||    
T  26737426 ttgtttgcgagttgggttttggaggggagggggagggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggtt 26737327  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    ||||||||||||||| || || ||||||||||||||| ||||||||||| |||| || |||||| |||||||| |||| ||||||| || || ||||       
T  26737326 ttggggggttttgaacggcttcatttatccaattttaaagttcccccaaattggaggattttggggggttaaacatacaaattgacaattttgccctctt 26737227  T
Q  200 aataatacaaaattccaatttta 222  Q
    |||||| ||| ||||||||||||    
T  26737226 aataattcaacattccaatttta 26737204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4582076 - 4582306
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg--------agtgctaaacccttgtttgtgagttttnnnnnnntaaggg 92  Q
    ||||||| ||||||| |||||||||||| |||| || |||||||||||  ||        |||| |||| ||||||||| |||||||        |||||    
T  4582076 ttgtttgcgagttggattttggaggggaggggaagggaaggaaaggctcatggctcatggagtggtaaatccttgtttgcgagttttaaaaaaacaaggg 4582175  T
Q  93 aaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatatta 192  Q
    ||||||||||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || ||     
T  4582176 aaaggttttggggggttttgaagggctttatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttg 4582275  T
Q  193 cccttacaataatacaaaattccaattttag 223  Q
    ||||   |||||| |||||||| ||||||||    
T  4582276 ccctcttaataattcaaaattctaattttag 4582306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 16802188 - 16802342
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| ||||  |||||||| ||||| || |||| ||||||||||||||||||||||        ||||||||||||    
T  16802188 ttgtttgcgagttggattttggagggga-gggaacgaaaggaacggcttatggagtg-taaacccttgtttgtgagttttaaaaaaacaagggaaaggtt 16802285  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggg 156  Q
    |||||||||||||||||| || |||| | |||||||| |||||||||||||||||||    
T  16802286 ttggggggttttgaagggcttcatttgttcaattttaaagttcccccaatttggggg 16802342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29730513 - 29730732
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||||||| |||||||| ||||||| ||||||| | || || |||| |||||||||||||| |||||||        ||||||||||||    
T  29730513 ttgtttgtgagttgggtttcggaggggaggggaggggaaggaaatgtttatggagtg-taaacccttgtttgcgagttttaaaaaaacaagggaaaggtt 29730611  T
Q  100 ttgggggg-ttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    |||||||| |||||||||| ||    | |||||||||| ||||||||||| |||| ||||||||| |||||||| |||  ||||||| || ||  |||      
T  29730612 ttgggggggttttgaagggctt----tgtccaattttaaagttcccccaaattggagggttttggggggttaaacatataaattgacaattttgtcctct 29730707  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| | |||||||||||||||    
T  29730708 taataattccaaattccaattttag 29730732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 25359637 - 25359747
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| ||||||||||||||| || |||| ||||||||||||||||||||||        ||||||||||||    
T  25359637 ttgtttgcgagttggattttggaggggaggggaaggaaaggaaaggcttatgaagtg-taaacccttgtttgtgagttttaaaaaatcaagggaaaggtt 25359735  T
Q  100 ttggggggtttt 111  Q
    ||||||||||||    
T  25359736 ttggggggtttt 25359747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 28329896 - 28330051
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| | ||||| | |||||||||||| |||||||        |||| | |||      
T  28329896 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggt-aacccttgtttgcgagttttaaaaaaacaaggcatagg-- 28329992  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
      |||||| ||||||||| || |||| |||||||||| ||||||||||| ||||||||||    
T  28329993 -ggggggggtttgaagggcttcatttgtccaattttaaagttcccccaaattggggggtt 28330051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 28507532 - 28507687
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| | ||||| | |||||||||||| |||||||        |||| | |||      
T  28507532 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggt-aacccttgtttgcgagttttaaaaaaacaaggcatagg-- 28507628  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggtt 159  Q
      |||||| ||||||||| || |||| |||||||||| ||||||||||| ||||||||||    
T  28507629 -ggggggggtttgaagggcttcatttgtccaattttaaagttcccccaaattggggggtt 28507687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30800412 - 30800483
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttg 71  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||| || |||| ||||| ||||||||    
T  30800412 ttgtttgcgagttgggttttggaggggaggggagggaaagaaaaggcttatgcagtggtaaactcttgtttg 30800483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1389731 - 1389765
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagg 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  1389731 ttgtttgggagttgggttttggaggggatgggagg 1389765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 927298 - 927346
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggctt 49  Q
    ||||||| |||||||||||| ||||  ||||||||| ||||||||||||    
T  927298 ttgtttgcgagttgggttttagaggaaaagggaggggaaggaaaggctt 927346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14629058 - 14629018
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaagg 41  Q
    ||||||| |||||||||||||||||||| |||| |||||||    
T  14629058 ttgtttgcgagttgggttttggaggggaggggaaggaaagg 14629018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14752527 - 14752748
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| || |||| |||||||||||| |||||||||        |||||||| |||    
T  14752527 ttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtg-taaacccttgttcgtgagttttaaaaaaacaagggaaaagtt 14752625  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||       
T  14752626 ttggggggttttgaagggtttcatttgtccaattttaaagttcccccaaattggggggttttgg-gggttaaacatacaaattgacaattttgccctctt 14752724  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||| ||||||||    
T  14752725 aataattcaaaattcaaattttag 14752748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27276109 - 27275887
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| || |||||||||||| || |||| ||| |||||||||| |||||||        ||||||||| ||    
T  27276109 ttgtttgtgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttgataaaacaagggaaagatt 27276011  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| | |||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||       
T  27276010 ttggggggttttgaagggcttcatttgttcaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctt 27275911  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  27275910 aataattcaaaattccaattttag 27275887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28729074 - 28728852
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtga-gtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||| |||||||||||||| || | || |||||||||||| ||| ||| |||||||||||||| |||||||        ||||||||||||    
T  28729074 ttgtttgcgagttaggttttggaggggagggtaagggaaggaaaggcttatgaagtg-taaacccttgtttgcgagttttaaaaaaacaagggaaaggtt 28728976  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||| ||||||||||||| || |||| ||||||||||  |||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||       
T  28728975 ttggagggttttgaagggcttcatttgtccaattttaaggttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctt 28728876  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  28728875 aataattcaaaattccaattttag 28728852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 20360558 - 20360777
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| ||||| |||||| ||||  | |||||||||||| | ||||| ||| |||||||||| |||||||        |||||||| |||    
T  20360558 ttgtttgcgagttggattttgtaggggaggggaacggaaggaaaggcttattgagtggtaa-cccttgtttgcgagtttttaaaaaagaagggaaaagtt 20360656  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| ||||| ||||||||||||||||| |||| ||||||| || |||||||       
T  20360657 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattgggaggttttggagggttaaacatacaaattgacaattttaccctctt 20360756  T
Q  200 aataatacaaaattccaattt 220  Q
    |||||| ||||||||||||||    
T  20360757 aataattcaaaattccaattt 20360777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 20550412 - 20550193
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| ||||| |||||| ||||  | |||||||||||| | ||||| ||| |||||||||| |||||||        |||||||| |||    
T  20550412 ttgtttgcgagttggattttgtaggggaggggaacggaaggaaaggcttattgagtggtaa-cccttgtttgcgagtttttaaaaaagaagggaaaagtt 20550314  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| ||||| ||||||||||||||||| |||| ||||||| || |||||||       
T  20550313 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattgggaggttttggagggttaaacatacaaattgacaattttaccctctt 20550214  T
Q  200 aataatacaaaattccaattt 220  Q
    |||||| ||||||||||||||    
T  20550213 aataattcaaaattccaattt 20550193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 44700201 - 44700027
Alignment:
Q  10 agttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttggggggt 108  Q
    ||||||||||||||||||| |||| || |||||||||||| || || | ||||| |||||||| |||||||       || |||||||||||||||||||    
T  44700201 agttgggttttggaggggaggggaagggaaggaaaggcttatggagaggtaaactcttgtttgggagttttaaaaaaata-gggaaaggttttggggggt 44700103  T
Q  109 tttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgac 185  Q
    ||||||||| || |||| |||||||||| ||||||||||| || |||||| |||| |||||||| |||| |||||||    
T  44700102 tttgaagggcttcatttgtccaattttaaagttcccccaaatt-gggggtattggggggttaaacatacaaattgac 44700027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 44773531 - 44773693
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||||||||||| |||| ||||||| ||||||| |||| || || | |||||||||||||| |||||||        | || |||||||    
T  44773531 ttgtttgcgagttgggttttggaagggaggggaggggaaggaaatgcttatggagaggtaaacccttgtttgggagttttaaaaaaacacgg-aaaggtt 44773629  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttgg 163  Q
    |||||||||||||||||| || |||  |||||||||| ||||||||||| ||||||||||||||    
T  44773630 ttggggggttttgaagggcttcattcgtccaattttaaagttcccccaaattggggggttttgg 44773693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9196056 - 9196279
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| ||||  | ||||||| |||| || ||| | ||||||||||||| |||||||        ||||||||||||    
T  9196056 ttgtttgcgagttgggttttggaggggaggggaatggaaggaaatgcttatggagt-caaaacccttgtttgcgagttttaaaaaaacaagggaaaggtt 9196154  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttgggg-ggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    || ||||||||||||||| || |||| |||||||||| |||||||| || |||||| | |||||  |||||||| |||| ||||||| || || |  |      
T  9196155 tttgggggttttgaagggcttcatttgtccaattttaaagttcccctaaattggggagattttgaggggttaaacatacaaattgacaattttgcaatct 9196254  T
Q  199 caataatacaaaattccaattttag 223  Q
     |||||| |||||||||||||||||    
T  9196255 taataattcaaaattccaattttag 9196279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 7880183 - 7880031
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||||| |||| || |||||||||||| || |||| ||| |||||||||| |||||||        ||||||||||||    
T  7880183 ttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttgataaaacaagggaaaggtt 7880085  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttgg 153  Q
    |||||||||||| || || || |||| | |||||||| ||||||||||| ||||    
T  7880084 ttggggggttttaaatggattcatttgttcaattttaaagttcccccaaattgg 7880031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 17171455 - 17171323
Alignment:
Q  88 aagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgacca 187  Q
    ||||| ||||||||| |||||||||||||| || |||| |||||||||| |||| ||||||  | ||||||||||  |||||||| |||| |||| || |    
T  17171455 aaggggaaggttttgcggggttttgaagggcttcatttgtccaattttaaagtttccccaaagtagggggttttg--gggttaaacatacaaattaacaa 17171358  T
Q  188 tattacccttacaataatacaaaattccaatttta 222  Q
    | || |||| | |||||| ||||||||||||||||    
T  17171357 ttttgccctcataataattcaaaattccaatttta 17171323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49536049 - 49535829
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||| || |||||| |||||||||| | || |||| |||| | ||||||| |||||||        ||||||||||||    
T  49536049 ttgtttgtgagttggattttggagggcaatggaggggaaggaaaggcatatggagtggtaaatc-ttgtttgcgagttttaacaaaacaagggaaaggtt 49535951  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||  || |||| |||||||||| |||||||| ||||   | | ||||||  ||||||| |||| ||||||  || || ||||       
T  49535950 ttggggggttttgaaggacttcatttgtccaattttaaagttccccaaattgaagagtttttgg--ggttaaacatacaaattgataattttgccctcgt 49535853  T
Q  200 aataatacaaaattccaattttag 223  Q
    |||||| |||||||||||||||||    
T  49535852 aataattcaaaattccaattttag 49535829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 48187572 - 48187727
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||| ||||||||||||| ||||||| |||||||||||| || |||| ||||||||| |||| |||||||        |||||||| |||    
T  48187572 ttgtttgcgagttgtgttttggaggggaggggaggggaaggaaaggcttatgaagtg-taaacccttatttgcgagttttaaaaaaccaagggaaatgtt 48187670  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttgggggg 157  Q
    || |||||||||||| || || |||| | ||||||||   ||||||||| ||||||||    
T  48187671 tt-gggggttttgaatggcttcatttgttcaattttaagattcccccaaattgggggg 48187727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23833002 - 23832958
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaag 45  Q
    ||||||| |||||||||||||||||||| |||| || ||||||||    
T  23833002 ttgtttgcgagttgggttttggaggggaggggatgggaaggaaag 23832958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 33334686 - 33334745
Alignment:
Q  88 aagggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaa 148  Q
    |||||||||||||||||| |||||||| || || |||| |||||||||| |||| ||||||    
T  33334686 aagggaaaggttttgggg-gttttgaaaggcttcatttgtccaattttaaagtttccccaa 33334745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 47115 - 46897
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||| ||||||| || | || |||||||||||| || ||| | ||||||||||||| |||||||        |||||||||| |    
T  47115 ttgtttgcgagttgggtttttgaggggagggaaagggaaggaaaggcttatggagt-caaaacccttgtttgcgagttttaaaaaaacaagggaaaggct 47017  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||| || || ||||       
T  47016 ttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaattttgccctctt 46917  T
Q  200 aataatacaaaattccaatt 219  Q
    |||||| ||||||| |||||    
T  46916 aataattcaaaatttcaatt 46897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 73722 - 73505
Alignment:
Q  9 gagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnnt-aagggaaaggttttggggg 106  Q
    ||||||||||| | |||||||||||||| |||||||||||| || |||| |||||||||||||| ||||||          |||||| ||||||||||||    
T  73722 gagttgggtttcgaaggggaagggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagtttaaaaaaaaacaagggataggttttggggg 73623  T
Q  107 g-ttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataat 205  Q
    | |||||||||| || ||||  ||||||||| ||||||||||| || |||| |||||| |||| ||| |||| ||||||| || || |||| | ||||||    
T  73622 ggttttgaagggcttcatttgaccaattttaaagttcccccaaatttggggattttggggggtgaaacatacaaattgacaatttttccctgataataat 73523  T
Q  206 acaaaattccaattttag 223  Q
     |||||||||||||||||    
T  73522 tcaaaattccaattttag 73505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 13317 - 13449
Alignment:
Q  91 ggaaaggttttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatat 190  Q
    ||||||||||||||||||| ||||||| || |||| |||||||||| |||||||| || |||||||||||||| |||||||| |||| ||||||| || |    
T  13317 ggaaaggttttggggggttctgaagggcttcatttgtccaattttaaagttccccaaaattggggggttttggggggttaaacatacaaattgacaattt 13416  T
Q  191 tacccttacaataatacaaaattccaattttag 223  Q
    | |||| | |||||| |||||||||||||||||    
T  13417 tgccctcataataattcaaaattccaattttag 13449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1147 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 604 - 405
Alignment:
Q  9 gagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggttttgggggg 107  Q
    ||||||| |||||||| ||||||||||| |||||||||||| || |||| ||||| |||||||| |||||||        || ||||| |||||||||||    
T  604 gagttggattttggagaggaagggaggggaaggaaaggcttatggagtggtaaactcttgtttgcgagttttaaaaaaacaaaggaaaagttttgggggg 505  T
Q  108 ttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttacaataatac 207  Q
    |||||||||| || |||| | |||||||| ||||||||||| ||| |||||||||   ||||||| |||| ||||||| || || |||| | ||||||||    
T  504 ttttgaagggcttcatttcttcaattttaaagttcccccaaattgaggggttttgtgtggttaaacatacaaattgacaattttgccctcataataatac 405  T

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Target: scaffold0223 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24954 - 24733
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||| |||||||||||||||||||||  |||||||| ||| || |||| |||| |||| |||| ||||||         || |||||  ||    
T  24954 ttgtttgcgagttcggttttggaggggaagggaggagaaggaaagacttatggagtggtaaatccttatttgcgagtttaaaaaaa--aacggaaatatt 24857  T
Q  100 ttgggggg-ttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattaccctta 198  Q
    |||||||| |||||||||| || |||| |||||||||| ||||||||||| |||||||||||||  || ||||| |||| ||||||| || || |||| |    
T  24856 ttgggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttttgtgggattaaacatacaaattgacaattttgccctca 24757  T
Q  199 caataatacaaaattccaatttta 222  Q
     |||||| ||||||||||||||||    
T  24756 taataattcaaaattccaatttta 24733  T

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Target: scaffold0063 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 1794 - 1911
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||||| | ||||  ||||||||||||||||||||||        |||||||| |||    
T  1794 ttgtttgtgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtcgtaaacccttgtttgtgagttttaaaaaaacaagggaaaagtt 1893  T
Q  100 ttggggggttttgaaggg 117  Q
    ||||||||||||||||||    
T  1894 ttggggggttttgaaggg 1911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10930 - 11149
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| ||||||| |||||||||| | ||||  | |||||| ||||| || |||| ||| |||||||||| |||||||        || ||||| |||    
T  10930 ttgtttgcgagttggattttggagggtaggggaatggaaggaatggcttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaaaggaaaagtt 11028  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||| ||||||||||||  || |||| |||||||||| ||||| ||||| |||||||||||  | |||||||| |||| ||||||| || || ||||       
T  11029 ttggagggttttgaaggacttcatttgtccaattttaaagttctcccaaattggggggttt--gggggttaaacatacaaattgacaattttgccctctt 11126  T
Q  200 aataatacaaaattccaatttta 222  Q
    |||||| ||||||||||||||||    
T  11127 aataattcaaaattccaatttta 11149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4041 - 4249
Alignment:
Q  1 ttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgtg-agtgctaaacccttgtttgtgagttttnnnnnnntaagggaaaggtt 99  Q
    ||||||| |||||||||||||||||||    ||||| || ||||||||| || |  | |||||| ||||||| |||||||       ||||| |||||||    
T  4041 ttgtttgcgagttgggttttggagggg----gaggggaaagaaaggcttatggaaaggtaaacctttgtttgggagttttaaaaaaataagg-aaaggtt 4135  T
Q  100 ttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggttttggagggttaaagatacgaattgaccatattacccttac 199  Q
    |||||||||||||||||| ||  |||||||||||| |   |||||  |||||  |||||||||| |||||||| |||| ||||||| || ||  |||||     
T  4136 ttggggggttttgaagggcttcttttatccaatttaaagtttccctaaattt--ggggttttggggggttaaacatacaaattgacgattttgtccttat 4233  T
Q  200 aataatacaaaattcc 215  Q
    |||||  |||||||||    
T  4234 aataaatcaaaattcc 4249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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