View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_low_8 (Length: 381)
Name: NF10787_low_8
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 14743836 - 14743483
Alignment:
| Q |
20 |
acggacttaatccagtggttcgcattgtgatcaacaacatcgtaagcaagaggtttggcctgacgaaagcggaagtatccggcctgactatcgaggagaa |
119 |
Q |
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| T |
14743836 |
acggacttaatccggtggttcgcattgtgatcaacaacatcgtaagcaagaggtttggcctgacgaaagcggaagtatctggcctgactatcgaggagaa |
14743737 |
T |
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| Q |
120 |
ggctcgcctgatcaaatcaaccttctccgaagcagagataaaacgcctcctcgaagaagaggttaatcgtttcttcgctcccttcaaatccctcttacat |
219 |
Q |
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| T |
14743736 |
ggctcgcctgatcaaatcaaccttctccgaagcagagataaaacgcctcctggaagaagaggttaatcgtttcttcgctcccttcaaatccctcttacat |
14743637 |
T |
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| Q |
220 |
ctcttttttcctgctctcgctgaatgcgnnnnnnnngttggcaacatcgatgacaccgttgaattttacttcaatctcatcttcttctctgttggtggtt |
319 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14743636 |
ctcttttttcctgctctcgctgaatgcg-aaaaaaagttggcaacatcgatgacaccgttgaattttacttcaatctcatcttcttctctgttggtggtt |
14743538 |
T |
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| Q |
320 |
cgtacttccctatctctcacttttccatccaaatatattattattcttcatctca |
374 |
Q |
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| T |
14743537 |
cgtacttccctatctctcacttttccatccaaatatattattattcttcatctca |
14743483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 14746761 - 14746601
Alignment:
| Q |
20 |
acggacttaatccagtggttcgcattgtgatcaacaacatcgtaagcaagaggtttggcctgacgaaagcggaagtatccggcctgactatcgaggagaa |
119 |
Q |
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||||| || |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
14746761 |
acggaattcatccggtggctagcattgtgatcaacaacatcgtaagcaagaggtttggcctgacgaaagcggaggtatccggcctgaccatcgaggagaa |
14746662 |
T |
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| Q |
120 |
ggctcgcctgatcaaatcaaccttctccgaagcagagataaaacgcctcctcgaagaagag |
180 |
Q |
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|||| |||||||||||||||||||||| ||||||||||| | |||||| ||||||||||| |
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| T |
14746661 |
ggcttgcctgatcaaatcaaccttctctgaagcagagattactcgcctcatcgaagaagag |
14746601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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