View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10787_low_9 (Length: 375)
Name: NF10787_low_9
Description: NF10787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10787_low_9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 27526202 - 27526559
Alignment:
| Q |
18 |
gttatgactcgggctttagcgaaagcaggtcgtccaatcttcttttcgctatgtgaatggtaattcttgcataattttagcatctcaatgctcttccaat |
117 |
Q |
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| T |
27526202 |
gttatgactcgggctttagcgaaagcaggtcgtccaatcttcttttcgctatgtgaatggtaattcttgcataattttagcatcttattgctcttccaat |
27526301 |
T |
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| Q |
118 |
gttaggtactcctctctaatgaaactttatttgtttgttaggggacaaatgtatccagctttatggggtgctaaagtgggaaatagttggagaactacta |
217 |
Q |
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| T |
27526302 |
gctaggtactcctctctaatgaaactttatttgtttgttaggggacaaatgtatccagctttatggggtgctaaagtgggaaatagttggagaactacta |
27526401 |
T |
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| Q |
218 |
atgacataaatgattcatgggaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatgtaaacaatttgttactaaaattgaaca |
317 |
Q |
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| T |
27526402 |
atgacataaatgattcatgggaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatttaaacaatttgttactaaaattgaact |
27526501 |
T |
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| Q |
318 |
attgtgtatccttagctactagctaataaaactaacttgttttatgcagtatgatttc |
375 |
Q |
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| T |
27526502 |
attgtgtatccttagctactagctaataaaactaacttgttttatgcagtatgatttc |
27526559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 114 - 375
Target Start/End: Original strand, 27531951 - 27532212
Alignment:
| Q |
114 |
caatgttaggtactcctctctaatgaaactttatttgtttgttaggggacaaatgtatccagctttatggggtgctaaagtgggaaatagttggagaact |
213 |
Q |
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| T |
27531951 |
caattttaagtattcctctctaatcaaactttctttgtttgttaggggagatatgcatccagctaaatggggtgctaaagtgggaaatagttggagaact |
27532050 |
T |
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| Q |
214 |
actaatgacataaatgattcatgggaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatgtaaacaattt-----gttactaa |
308 |
Q |
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| T |
27532051 |
actggtgacataactgatacatgggaaaggtaaaaaccatgcactcaat-------------tggttttttgaaatgtaaacaagttcgatatttactaa |
27532137 |
T |
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| Q |
309 |
aattgaacaattgtg--------tatccttagctactagctaataaaactaacttgttttatgcagtatgatttc |
375 |
Q |
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| T |
27532138 |
agttgaacaatcgtgtatcctactatccttagctactagctaataaaattaacttgttttatgcagtatgatttc |
27532212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 27531692 - 27531756
Alignment:
| Q |
18 |
gttatgactcgggctttagcgaaagcaggtcgtccaatcttcttttcgctatgtgaatggtaatt |
82 |
Q |
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| T |
27531692 |
gttatgactcgcgctttaatgaaggcaggtcgtccaatcttcttttcgctatgtgaatggtaatt |
27531756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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