View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10788_2 (Length: 416)
Name: NF10788_2
Description: NF10788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10788_2 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 40022985 - 40023389
Alignment:
| Q |
1 |
agcccttcctcagttgaacataaggaacttgtttaggagtattcataaaatagaatgttgtatctctctgcttaagtgaactgttatgtttcaccgcgat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40022985 |
agcccttcctcagttgaacatatggaacttgtttaggagtattcataaaatagaatgttgtatctccctgcttaagtgaactgttatgtttcaccgcgat |
40023084 |
T |
|
| Q |
101 |
ggctagatgtttcttattattacccccattgcaagtgttttcccccggcttctcctccatctcaatacccattcttaagtgtaacttctcacccttacgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40023085 |
ggctagatgtttcttattattacccccattgcaagtgttttccaccggcttctcctccatctcaatacccattcttaagtgtaacttctcacccttacat |
40023184 |
T |
|
| Q |
201 |
ggccatggttgtttacatagatcctgata----cttccattttttgttaaagcaatgataaacctacacgatgtccaagcattcattaatgtctcaacta |
296 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
40023185 |
ggccatggttgtttacatagatcctgatactcccttccattttcagttaaagcaatgacaaacctacacgatgtccaagcattcattaatgtctcgacta |
40023284 |
T |
|
| Q |
297 |
gaagcctgattattattagcacacattttggttcatctcactcgacctaaccctagctcccctttgtcaccaaaatatgatcgatggtagcctatgtcat |
396 |
Q |
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|||||||| |||||||| |||||||||||||||| | ||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40023285 |
gaagcctg---attattaggacacattttggttcatgtgtgtcgtcgtaaccctagctcccctttgtcaccaaaata-gatcgatggtagcctatgtcat |
40023380 |
T |
|
| Q |
397 |
acccttctt |
405 |
Q |
| |
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| ||||||| |
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| T |
40023381 |
aaccttctt |
40023389 |
T |
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