View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10788_3 (Length: 408)

Name: NF10788_3
Description: NF10788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10788_3
NF10788_3
[»] chr7 (28 HSPs)
chr7 (1-398)||(38286320-38286717)
chr7 (1-129)||(38173541-38173669)
chr7 (1-129)||(42796330-42796458)
chr7 (1-127)||(35083763-35083889)
chr7 (1-129)||(35073685-35073813)
chr7 (1-129)||(35084736-35084864)
chr7 (1-129)||(35100037-35100165)
chr7 (1-129)||(45585292-45585420)
chr7 (1-104)||(34145909-34146012)
chr7 (1-104)||(34181423-34181526)
chr7 (170-340)||(38157851-38158021)
chr7 (13-106)||(37883145-37883238)
chr7 (1-104)||(33859979-33860082)
chr7 (13-108)||(38166996-38167091)
chr7 (170-340)||(38150113-38150282)
chr7 (170-311)||(38188013-38188154)
chr7 (1-129)||(36745248-36745379)
chr7 (185-345)||(38173310-38173470)
chr7 (27-97)||(36469414-36469484)
chr7 (170-327)||(36745035-36745192)
chr7 (185-242)||(37883350-37883407)
chr7 (8-50)||(38150747-38150789)
chr7 (170-311)||(33860163-33860304)
chr7 (170-311)||(34146093-34146234)
chr7 (170-311)||(34181201-34181342)
chr7 (2-50)||(38158150-38158198)
chr7 (170-258)||(38166831-38166919)
chr7 (19-108)||(38188231-38188320)
[»] chr3 (1 HSPs)
chr3 (1-390)||(2223728-2224117)
[»] chr5 (1 HSPs)
chr5 (1-129)||(9663361-9663489)
[»] chr6 (10 HSPs)
chr6 (1-104)||(25562938-25563041)
chr6 (1-104)||(25568555-25568658)
chr6 (1-104)||(26102450-26102553)
chr6 (1-104)||(26002423-26002526)
chr6 (10-108)||(4164576-4164674)
chr6 (10-108)||(4226197-4226295)
chr6 (170-327)||(4164357-4164514)
chr6 (170-327)||(4225978-4226135)
chr6 (170-311)||(25563124-25563265)
chr6 (170-311)||(26102636-26102777)
[»] chr2 (5 HSPs)
chr2 (2-108)||(12410914-12411021)
chr2 (2-108)||(12422974-12423081)
chr2 (7-110)||(29196574-29196677)
chr2 (286-345)||(12409845-12409904)
chr2 (286-345)||(12421905-12421964)
[»] scaffold0176 (1 HSPs)
scaffold0176 (9-129)||(23943-24063)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 38286717 - 38286320
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38286717 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 38286618  T
Q  101 actttgatattcgtaccttgtttgactatgataaatttccagaaaacatcacactctatgaattggtcgaatctgaatttaccgcaagagtggatcaatt 200  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38286617 actttgatattcataccttgtgtgactatgataaatttccagaaaacatcacactctatgaatgggtcgaatctgaatttaccgcaagagtggatcaatt 38286518  T
Q  201 catgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacactggtgtcatcgaaaggatgatttccaaagga 300  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38286517 catgctgcattatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacactggtgtcatcgaaaggatgatttccaaagta 38286418  T
Q  301 attgctaagggagtcaaacgtcttgaattgatcttatcatatcaagatgatgatgatgctgattttgattacatacgtccatacacattacccttcat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38286417 attgctaagggagtcaaacgtcttgaattgatcttatcatatcaagatgatgatgatgctgattttgattacatacgtccatacacattacccttcat 38286320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 38173669 - 38173541
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||  || || |||||||    
T  38173669 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaacgatggcttcatgaatggagatcaagaattgacctca 38173570  T
Q  101 actttgatattcgtaccttgtttgactat 129  Q
    | |||||| | | || | |||||||||||    
T  38173569 attttgatctccataacatgtttgactat 38173541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 42796330 - 42796458
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| |||||  ||||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||| |||| ||||||||    
T  42796330 atatcttatatcttttccaagtttggtttgaaggatttggtgaaaacaagcgcattgtccaaacgatggattcacgaatggggattaaggacggacctca 42796429  T
Q  101 actttgatattcgtaccttgtttgactat 129  Q
    |||||||| ||| |||| |||||||||||    
T  42796430 actttgatcttcataccatgtttgactat 42796458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 35083889 - 35083763
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  ||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||| |||| ||||||||    
T  35083889 atatcttatatcttttccaagttagctttgaaggatttggtgaaaactagtgcattgtccaaacgatgggttcacgaatggggattaaggacggacctca 35083790  T
Q  101 actttgatattcgtaccttgtttgact 127  Q
    |||||||| ||| |||| |||||||||    
T  35083789 actttgatcttcataccatgtttgact 35083763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 35073813 - 35073685
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||| ||||| ||||||  ||||||||||||||||||||| |||| |||||| |||| |||| |||||||||||||||| |||| ||||||||    
T  35073813 atatcttatatattttccaagttagctttgaaggatttggtgaaaactagtgcattgtctaaacgatgggttcacgaatggggattaaggacggacctca 35073714  T
Q  101 actttgatattcgtaccttgtttgactat 129  Q
    |||||||| ||| |||| |||||||||||    
T  35073713 actttgatcttcataccatgtttgactat 35073685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 35084864 - 35084736
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  ||||||||||||||||||||| |||| |||||| |||| |||| |||||||||||||||| |||  ||||||||    
T  35084864 atatcttatatcttttccaagttagctttgaaggatttggtgaaaactagtgcattgtctaaacgatgggttcacgaatggggattaagggcggacctca 35084765  T
Q  101 actttgatattcgtaccttgtttgactat 129  Q
    |||||||| ||| |||| |||||||||||    
T  35084764 actttgatcttcataccatgtttgactat 35084736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 35100165 - 35100037
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  ||||||||||||||||||||| |||| ||||||  ||| |||| |||||||||||||||| |||| ||||||||    
T  35100165 atatcttatatcttttccaagttagctttgaaggatttggtgaaaactagtgcattgtctgaacgatgggttcacgaatggggattaaggacggacctca 35100066  T
Q  101 actttgatattcgtaccttgtttgactat 129  Q
    |||||||| ||| |||| |||||||||||    
T  35100065 actttgatcttcataccatgtttgactat 35100037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 45585420 - 45585292
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  |||||||||||||||||||||||||| ||| ||||||| |||| |||| || |||||||| ||||||||||| |    
T  45585420 atatcttatatcttttccaagttagctttgaaggatttggtgaaaacaagtgcattatccaaacaatggattcatgattggggattaaggatggacctta 45585321  T
Q  101 actttgatattcgtaccttgtttgactat 129  Q
    ||||||||   | |||| |||||||||||    
T  45585320 actttgatcaccataccatgtttgactat 45585292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 34145909 - 34146012
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  |||||| |||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||| |    
T  34145909 atatcttatatcttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggacctta 34146008  T
Q  101 actt 104  Q
    ||||    
T  34146009 actt 34146012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 34181526 - 34181423
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  |||||| |||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||| |    
T  34181526 atatcttatatcttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggacctta 34181427  T
Q  101 actt 104  Q
    ||||    
T  34181426 actt 34181423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 170 - 340
Target Start/End: Complemental strand, 38158021 - 38157851
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||||||||| ||  |||| ||||||||||||||||||||  |||||| ||||||||  | ||||||||||||   |||||||||||| ||||| |||     
T  38158021 aatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggcgacatgattagttcaatccgactaagttttccattaggtcctaaatacaa 38157922  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaattgatcttatcat 340  Q
    || |  ||| || || |||||| ||||||||||||||||||| | ||||||| |||||||| |||| ||||    
T  38157921 tgattccattgacagaatgattaccaaaggaattgctaagggtgccaaacgtattgaattgctcttctcat 38157851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 37883145 - 37883238
Alignment:
Q  13 ttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctcaactttg 106  Q
    |||||||||||| ||||||||||||  |||||||||||   ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  37883145 ttttcaaagttaagtttgaaggattccgtgaaaacaagcacattgtcctaacaatggcttcacgaatggggattcaggatggacctcaattttg 37883238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 33859979 - 33860082
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| || |||  |||||| |||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||| |    
T  33859979 atatcttatatcttttccaatttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggacctta 33860078  T
Q  101 actt 104  Q
    ||||    
T  33860079 actt 33860082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 38167091 - 38166996
Alignment:
Q  13 ttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctcaactttgat 108  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||||| |  |||||||| |||||| |||| ||||||||||| |||||||||    
T  38167091 ttttcaaagttaggtttgaaggatttggtgaaaaccagtgcattgtccaagcggtggcttcaggaatggagattaaggatggacctaaactttgat 38166996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 340
Target Start/End: Complemental strand, 38150282 - 38150113
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||||||||| ||  |||| |||||||||||||||||||| |||||| ||| |||||  | ||||||||| ||   |||||||||||| |||||||||     
T  38150282 aatctgaatttgccaaaagattggatcaattcatgctgcattatcaagatgatatgattagttcaatccgagtaaattttccattaggttctaaacaca- 38150184  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaattgatcttatcat 340  Q
     | ||  || || || |||||||||||||||||| ||||||| | ||||||| |||||||| |||| ||||    
T  38150183 agatgcaattgacagaatgatttccaaaggaattactaagggtgccaaacgtattgaattgctcttctcat 38150113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 311
Target Start/End: Complemental strand, 38188154 - 38188013
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    |||||||||||  | ||||| |||||||||||||||| ||| |||||||||  || ||||| ||| | ||| ||   |||||||||| |||||||||||     
T  38188154 aatctgaatttgtcacaagattggatcaattcatgctacattatcaaggtgctatcatccgttcagttcgagtaaattttccattagatactaaacacag 38188055  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaaggg 311  Q
    || |||||| || ||  |||||||||||||||||||||||||    
T  38188054 tgttgtcattgacagagtgatttccaaaggaattgctaaggg 38188013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 36745379 - 36745248
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaa---tggggattcaggatggacc 97  Q
    ||||| ||||||||||| ||||||  |||||||||||||||||||||||||| ||| ||||||  |||| ||||||||   |||||||| | || ||| |    
T  36745379 atatcttatatcttttccaagttagctttgaaggatttggtgaaaacaagtgcattatccaaaagatggattcacgaatattggggattaaagacggaac 36745280  T
Q  98 tcaactttgatattcgtaccttgtttgactat 129  Q
    ||||||||||| | | |||  |||||||||||    
T  36745279 tcaactttgatctccatacaatgtttgactat 36745248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 345
Target Start/End: Complemental strand, 38173470 - 38173310
Alignment:
Q  185 caagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacactggtgtcatcgaaag 284  Q
    ||||| |||||| |||||||||| | |||| ||||||||||||||| ||| | ||| | |  ||||||||||||| | |||| | || |||||| || |     
T  38173470 caagaatggatcgattcatgctgaaacatcgaggtgacatgatccgttcacttcgagtggattttccattaggtaatcaacatagtgatgtcattgacaa 38173371  T
Q  285 gatgatttccaaaggaattgctaagggagtcaaacgtcttgaattgatcttatcatatcaa 345  Q
     ||||||| |||||||||||||||||| ||  ||||| ||||| || |||| |||||||||    
T  38173370 aatgattttcaaaggaattgctaagggtgtggaacgtattgaactgctcttctcatatcaa 38173310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 36469414 - 36469484
Alignment:
Q  27 tttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacc 97  Q
    ||||||||||||||||||||| || ||||| |||||||  ||||||||||| ||| |||| ||||||||||    
T  36469414 tttgaaggatttggtgaaaaccagcgtattatccaaacgttggcttcacgagtggagattaaggatggacc 36469484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 327
Target Start/End: Complemental strand, 36745192 - 36745035
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||||||||| || | ||| ||||||||||  |||| ||| || |||||||||||||| | ||||||||| ||   ||||||||||| | | ||||||     
T  36745192 aatctgaatttgccaccagattggatcaatttgtgctccattataaaggtgacatgatcagttcaatccgagtaaaatttccattaggcaatgaacacag 36745093  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaa 327  Q
     | || ||| || ||  |||| |||||||||||||||||||| | ||||||| |||||    
T  36745092 ggatgccattgatagattgatctccaaaggaattgctaagggtgccaaacgtattgaa 36745035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 37883350 - 37883407
Alignment:
Q  185 caagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgact 242  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| | |||||||||||    
T  37883350 caagattggatcaattcatgctgcatcatcaaggtaccatgatcagttcaatccgact 37883407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 38150789 - 38150747
Alignment:
Q  8 atatcttttcaaagttatgtttgaaggatttggtgaaaacaag 50  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  38150789 atatcttttcaaggttaggtttgaaggatttggtgaaaacaag 38150747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 33860163 - 33860304
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||||||||| || ||||| |||||||||| ||||| ||| || |||||| ||||||||| || || ||| ||   ||||||||| ||| | |||| |     
T  33860163 aatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatgatccgttccattcgagtaaaatttccattatgtaatgaacatag 33860262  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaaggg 311  Q
     | |||||| || ||  |||| ||||||||||||||||||||    
T  33860263 ggatgtcattgatagattgatctccaaaggaattgctaaggg 33860304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 34146093 - 34146234
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||||||||| || ||||| |||||||||| ||||| ||| || |||||| ||||||||| || || ||| ||   ||||||||| ||| | |||| |     
T  34146093 aatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatgatccgttccattcgagtaaaatttccattatgtaatgaacatag 34146192  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaaggg 311  Q
     | |||||| || ||  |||| ||||||||||||||||||||    
T  34146193 ggatgtcattgatagattgatctccaaaggaattgctaaggg 34146234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 311
Target Start/End: Complemental strand, 34181342 - 34181201
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||||||||| || ||||| |||||||||| ||||| ||| || |||||| ||||||||| || || ||| ||   ||||||||| ||| | |||| |     
T  34181342 aatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatgatccgttccattcgagtaaaatttccattatgtaatgaacatag 34181243  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaaggg 311  Q
     | |||||| || ||  |||| ||||||||||||||||||||    
T  34181242 ggatgtcattgatagattgatctccaaaggaattgctaaggg 34181201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 38158198 - 38158150
Alignment:
Q  2 tatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaag 50  Q
    ||||| |||| |||||||||||| |||||||||||||||| ||||||||    
T  38158198 tatcaaatatattttcaaagttaggtttgaaggatttggtaaaaacaag 38158150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 38166919 - 38166831
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggt 258  Q
    ||||||||||| ||  |||| |||||||||||||||||||| |||||| ||| |||||  | ||||||||| ||   ||||||||||||    
T  38166919 aatctgaatttgccaaaagattggatcaattcatgctgcattatcaagatgatatgattagttcaatccgagtaaattttccattaggt 38166831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 38188320 - 38188231
Alignment:
Q  19 aagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctcaactttgat 108  Q
    |||||| |||||||||||||||||||||||||   | ||||||||| ||||| ||| ||||  ||||| || || || ||||| ||||||    
T  38188320 aagttaggtttgaaggatttggtgaaaacaagcacactgtccaaacaatggcgtcatgaattaggattaagaattgatctcaattttgat 38188231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 2224117 - 2223728
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  2224117 atatcatatatcttttcaaagttaggtttgaaggatttggtgaaaacaatcacattgtccaaactatggcttcacgaatggggattcagggtggacctca 2224018  T
Q  101 actttgatattcgtaccttgtttgactatgataaatttccagaaaacatcacactctatgaattggtcgaatctgaatttaccgcaagagtggatcaatt 200  Q
    ||||||||||   ||| |||||||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  2224017 actttgatatcaatactttgtttgactatgataaatttccaaaagacatcacactctttgaatgggtcgaatctgaatttgccgcaagagtggatcaatt 2223918  T
Q  201 catgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacactggtgtcatcgaaaggatgatttccaaagga 300  Q
    |||||||||| ||||||||||||||||||  ||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  2223917 catgctgcattatcaaggtgacatgatccattcaatccgactcgtgtttccattaggtaccaaacacacaggtgtcattgaaaggatgatttccaaagga 2223818  T
Q  301 attgctaagggagtcaaacgtcttgaattgatcttatcatatcaagatgatgatgatgctgattttgattacatacgtccatacacatta 390  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||| ||||    
T  2223817 attgctaagggtgtcaaacgtcttgaattgatcttatcatatcaagatgatgatgatgctgattctgattatatgcgcccatacatatta 2223728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 9663361 - 9663489
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||  ||||||  ||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||| |||| ||||||||    
T  9663361 atatcttatatctttttcaagttagctttgaaggatttggtgaaaactagtgcattgtccaaacgatgggttcacgaatggggattaaggacggacctca 9663460  T
Q  101 actttgatattcgtaccttgtttgactat 129  Q
    |||||||| ||| |||| |||||||||||    
T  9663461 actttgatcttcataccatgtttgactat 9663489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 25562938 - 25563041
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  |||||| |||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||| |    
T  25562938 atatcttatatcttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggacctta 25563037  T
Q  101 actt 104  Q
    ||||    
T  25563038 actt 25563041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 25568555 - 25568658
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  |||||| |||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||| |    
T  25568555 atatcttatatcttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggacctta 25568654  T
Q  101 actt 104  Q
    ||||    
T  25568655 actt 25568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26102450 - 26102553
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  |||||| |||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||| |    
T  26102450 atatcttatatcttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggacctta 26102549  T
Q  101 actt 104  Q
    ||||    
T  26102550 actt 26102553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26002423 - 26002526
Alignment:
Q  1 atatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctca 100  Q
    ||||| ||||||||||| ||||||  |||||| |||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||| ||||||| |    
T  26002423 atatcttatatcttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaagggtggacctta 26002522  T
Q  101 actt 104  Q
    ||||    
T  26002523 actt 26002526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 4164674 - 4164576
Alignment:
Q  10 atcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctcaactttgat 108  Q
    |||||||| |||||| || |||| |||||||| ||||| ||   |||||| |||| |||||||||||||||||| ||| | |  |||||||||||||||    
T  4164674 atcttttccaagttaagtatgaaagatttggtaaaaactagcacattgtcgaaacaatggcttcacgaatggggtttccgtacagacctcaactttgat 4164576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 4226295 - 4226197
Alignment:
Q  10 atcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctcaactttgat 108  Q
    |||||||| |||||| || |||| |||||||| ||||| ||   |||||| |||| |||||||||||||||||| ||| | |  |||||||||||||||    
T  4226295 atcttttccaagttaagtatgaaagatttggtaaaaactagcacattgtcgaaacaatggcttcacgaatggggtttccgtacagacctcaactttgat 4226197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 327
Target Start/End: Complemental strand, 4164514 - 4164357
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||| ||||| || ||| | |||||||||||||| ||||| | ||||||| ||||||||  ||||||||| ||   ||||||||||||    |||| |     
T  4164514 aatctcaatttgccacaatattggatcaattcatgatgcattaccaaggtgccatgatccattcaatccgagtaaattttccattaggtgaccaacatag 4164415  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaa 327  Q
     | |||||| || |   ||||||||||||||||||||||||| | ||||||| |||||    
T  4164414 ggatgtcattgacaaattgatttccaaaggaattgctaagggtgccaaacgtattgaa 4164357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 327
Target Start/End: Complemental strand, 4226135 - 4225978
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||| ||||| || ||| | |||||||||||||| ||||| | ||||||| ||||||||  ||||||||| ||   ||||||||||||    |||| |     
T  4226135 aatctcaatttgccacaatattggatcaattcatgatgcattaccaaggtgccatgatccattcaatccgagtaaattttccattaggtgaccaacatag 4226036  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaa 327  Q
     | |||||| || |   ||||||||||||||||||||||||| | ||||||| |||||    
T  4226035 ggatgtcattgacaaattgatttccaaaggaattgctaagggtgccaaacgtattgaa 4225978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 25563124 - 25563265
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||||||||| || ||||| |||||||||| ||||||||| || |||||| ||| ||||| || || ||| ||   ||||||||| ||| | |||| |     
T  25563124 aatctgaattttccacaagattggatcaatttatgctgcattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatcaacatag 25563223  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaaggg 311  Q
     | ||||||  | ||  |||| ||||||||||||||||||||    
T  25563224 ggatgtcattcatagattgatctccaaaggaattgctaaggg 25563265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 26102636 - 26102777
Alignment:
Q  170 aatctgaatttaccgcaagagtggatcaattcatgctgcatcatcaaggtgacatgatccggtcaatccgactagtgtttccattaggtactaaacacac 269  Q
    ||||||||||| || ||||| |||||||||| ||||||||| || |||||| ||| ||||| || || ||| ||   ||||||||| ||| | |||| |     
T  26102636 aatctgaattttccacaagattggatcaatttatgctgcattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatcaacatag 26102735  T
Q  270 tggtgtcatcgaaaggatgatttccaaaggaattgctaaggg 311  Q
     | ||||||  | ||  |||| ||||||||||||||||||||    
T  26102736 ggatgtcattcatagattgatctccaaaggaattgctaaggg 26102777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 12411021 - 12410914
Alignment:
Q  2 tatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaat-ggggattcaggatggacctca 100  Q
    |||| |||||||||   |||||| ||| ||||||||||||||||||||||  ||||||||||| |||||||||||||| ||||||| || ||||||||||    
T  12411021 tatcttatatctttagcaagttaagttggaaggatttggtgaaaacaagtacattgtccaaacgatggcttcacgaatgggggattaagaatggacctca 12410922  T
Q  101 actttgat 108  Q
    ||||||||    
T  12410921 actttgat 12410914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 12423081 - 12422974
Alignment:
Q  2 tatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaat-ggggattcaggatggacctca 100  Q
    |||| |||||||||   |||||| ||| ||||||||||||||||||||||  ||||||||||| |||||||||||||| ||||||| || ||||||||||    
T  12423081 tatcttatatctttagcaagttaagttggaaggatttggtgaaaacaagtacattgtccaaacgatggcttcacgaatgggggattaagaatggacctca 12422982  T
Q  101 actttgat 108  Q
    ||||||||    
T  12422981 actttgat 12422974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 29196677 - 29196574
Alignment:
Q  7 tatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctcaactttg 106  Q
    ||||| |||||||||||| || ||||||||||||||||||||||  ||||||| |||  |||| |||| |||||| |||  |  | ||||||||||||||    
T  29196677 tatatattttcaaagttaagtatgaaggatttggtgaaaacaagcatattgtctaaaacatggattcatgaatggagatcaaccaaggacctcaactttg 29196578  T
Q  107 atat 110  Q
    ||||    
T  29196577 atat 29196574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 12409904 - 12409845
Alignment:
Q  286 atgatttccaaaggaattgctaagggagtcaaacgtcttgaattgatcttatcatatcaa 345  Q
    |||||||||||||||||||| ||||| ||||||||| ||||| || |||| |||||||||    
T  12409904 atgatttccaaaggaattgccaagggtgtcaaacgtattgaactgctcttctcatatcaa 12409845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 12421964 - 12421905
Alignment:
Q  286 atgatttccaaaggaattgctaagggagtcaaacgtcttgaattgatcttatcatatcaa 345  Q
    |||||||||||||||||||| ||||| ||||||||| ||||| || |||| |||||||||    
T  12421964 atgatttccaaaggaattgccaagggtgtcaaacgtattgaactgctcttctcatatcaa 12421905  T

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Target: scaffold0176 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 24063 - 23943
Alignment:
Q  9 tatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctcaactttgat 108  Q
    ||||||||| ||||||  ||||||||||||||||||||| |||| ||||||||||| |||| |||| |||||||||||  |||||||||| ||||| |||    
T  24063 tatcttttccaagttagctttgaaggatttggtgaaaaccagtgcattgtccaaacaatggattcatgaatggggattacggatggacctaaacttcgat 23964  T
Q  109 attcgtaccttgtttgactat 129  Q
     |   |||| |||||||||||    
T  23963 ctctataccatgtttgactat 23943  T

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