View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10788_7 (Length: 341)
Name: NF10788_7
Description: NF10788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10788_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 29104237 - 29104565
Alignment:
| Q |
1 |
aatcgatgttgcgaattatatgcttgagatttaacgactgctattgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgt |
100 |
Q |
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| T |
29104237 |
aatcgatgttgcgaattatatgcttgagatttaacgactgctgttgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgt |
29104336 |
T |
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| Q |
101 |
acatatcaagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccattcttagaaat |
200 |
Q |
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| T |
29104337 |
acatatcaagcaagcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatcttaaaagtaaaatagctccatccttagaaat |
29104436 |
T |
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| Q |
201 |
ctcagcaaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgag |
300 |
Q |
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| T |
29104437 |
ctcagcaaaacaagcttct------------ttgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgag |
29104524 |
T |
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| Q |
301 |
atcttaaccgcttctaaccaactgttgattttcatctcaag |
341 |
Q |
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| T |
29104525 |
atcttaaccgcctctaaccaactgttgattttcatctcaag |
29104565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 29089982 - 29090304
Alignment:
| Q |
7 |
tgttgcgaattatatgcttgagatttaacgactgctattgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatat |
106 |
Q |
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||||| ||||||||||||||||||||||| | | ||||||| || |||||||| ||||||| |||||| ||||||| ||||||||| || ||||||| |
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| T |
29089982 |
tgttgtgaattatatgcttgagatttaacaccagaggttgaattgaaagagaaaatcgattcaacctccggtaacaacatggtgattgtggcatacatat |
29090081 |
T |
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| Q |
107 |
caagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccat-tcttagaaatctcag |
205 |
Q |
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||||||| || |||||||||||||| | ||||||||||||| ||||||| ||||||||||| || || | | ||||||||| |||| ||||| ||| |
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| T |
29090082 |
caagcaaacggaaaatcttctccggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagctccatctctt-gaaatttcac |
29090180 |
T |
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| Q |
206 |
caaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatctt |
305 |
Q |
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| T |
29090181 |
caaaacaagcttct------------ctgatggaattcgaagcgaaaattcgttcgcagaggtttctctctccagaaaagagtgttctcactgagatctt |
29090268 |
T |
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| Q |
306 |
aaccgcttctaaccaactgttgattttcatctcaag |
341 |
Q |
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||| || |||||||||| |||||||||||||||||| |
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| T |
29090269 |
aactgcctctaaccaacagttgattttcatctcaag |
29090304 |
T |
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