View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10788_low_1 (Length: 366)
Name: NF10788_low_1
Description: NF10788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10788_low_1 |
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| [»] scaffold0891 (1 HSPs) |
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| [»] scaffold1268 (1 HSPs) |
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| [»] scaffold1267 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 25 - 351
Target Start/End: Complemental strand, 523 - 197
Alignment:
| Q |
25 |
caactttatttcgggcactttctgagttgtctaacatttatcgttcaagtgtctgacaccacgacacacctagttcctaaagtctccgtgcttcatatat |
124 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
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| T |
523 |
caactttatttcgggcactttctgagttgtctaacatgtatcgttcaagtgtctgacaccacgacacacctagtccctgaagtg-ccgtgcttcatatat |
425 |
T |
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| Q |
125 |
gcagaaaacaattaca-aaggagatatactactcgtttaacttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaa |
223 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
424 |
gcagaaaacaattacagaaggagatatactactcgtttaacttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaa |
325 |
T |
|
| Q |
224 |
caagccagaagccgaagcagtccaaaacactagttcttgaatccccaaatcttttgctactcttccagcaaagctcgaaattccatcggcaattatgcaa |
323 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
324 |
caagccagaagccgaagcagtccaaaacactagctcttgaatccccaaatcttttgctactcttccagcaaagctcgaaattccatcggcaattatgcaa |
225 |
T |
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| Q |
324 |
gtaactggaaaatggtgtgttgaagagt |
351 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
224 |
gtaactggaaaatggtgtgttgaagagt |
197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 161 - 333
Target Start/End: Original strand, 35775909 - 35776081
Alignment:
| Q |
161 |
taacttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagttct |
260 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||| |
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| T |
35775909 |
taacttacctttgaagggaataattcccctctcaacaagctcatcgtactgtaaatatcccaacatgccacaagcagaagcagtccaaaacactagttct |
35776008 |
T |
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| Q |
261 |
tgaatccccaaatcttttgctactcttccagcaaagctcgaaattccatcggcaattatgcaagtaactggaa |
333 |
Q |
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|||||||||||||| ||||| ||| |||||||||||| ||||| |||||| |||||||||||||||||||||| |
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| T |
35776009 |
tgaatccccaaatcctttgccacttttccagcaaagcccgaaaatccatcagcaattatgcaagtaactggaa |
35776081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 333
Target Start/End: Original strand, 35854229 - 35854396
Alignment:
| Q |
166 |
tacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagttcttgaat |
265 |
Q |
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|||||||||| |||| |||||| || |||||||||||||| ||||| |||||||| | |||||| |||| ||||||||||||||| ||| |||| ||| |
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| T |
35854229 |
tacctttgaatggaagaattcctcttttaacaagctcatcatattgcaaatatccgacaaagccacaagcagaagcagtccaaaactgtagctctttaat |
35854328 |
T |
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| Q |
266 |
ccccaaatcttttgctactcttccagcaaagctcgaaattccatcggcaattatgcaagtaactggaa |
333 |
Q |
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|| ||||| || || |||||||||||||| | | || ||||| |||||||||||||||||||||| |
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| T |
35854329 |
gcctaaatccttagccactcttccagcaaatcccattatgccatcagcaattatgcaagtaactggaa |
35854396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 333
Target Start/End: Original strand, 35759489 - 35759656
Alignment:
| Q |
166 |
tacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagttcttgaat |
265 |
Q |
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|||||| ||| |||| ||| || || || ||||| ||||| || || |||||||||| || ||| |||| ||||||||||||||| || ||||||||| |
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| T |
35759489 |
taccttggaatggaagaatgcctcttttgacaagttcatcataatgcaaatatcccacaaacccacaagcagaagcagtccaaaactgtatttcttgaat |
35759588 |
T |
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| Q |
266 |
ccccaaatcttttgctactcttccagcaaagctcgaaattccatcggcaattatgcaagtaactggaa |
333 |
Q |
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||||||||| ||||||||||||||||||| | ||| ||||| ||||| |||||||||||||||| |
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| T |
35759589 |
gcccaaatctcttgctactcttccagcaaaaccaaaaagaccatcagcaataatgcaagtaactggaa |
35759656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 333
Target Start/End: Original strand, 35868837 - 35869005
Alignment:
| Q |
165 |
ttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagttcttgaa |
264 |
Q |
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||||||||||| |||| |||||| || || |||||||| ||| |||| |||||| ||| || ||| ||| ||||| ||||||| || ||| ||| |
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| T |
35868837 |
ttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaacccacaagtagaagctgtccaaagttgtatctctcgaa |
35868936 |
T |
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| Q |
265 |
tccccaaatcttttgctactcttccagcaaagctcgaaatt-ccatcggcaattatgcaagtaactggaa |
333 |
Q |
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| T |
35868937 |
tgcccaaatctttagccactcttccagcaaag-tcataattaccatcagcaattatgcaagtaactggaa |
35869005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 333
Target Start/End: Complemental strand, 353 - 185
Alignment:
| Q |
165 |
ttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagttcttgaa |
264 |
Q |
| |
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||||||||||| |||| |||||| || || |||||||| ||| |||| |||||| ||| || ||| ||| ||||| ||||||| || ||| ||| |
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| T |
353 |
ttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaacccacaagtagaagctgtccaaagttgtatctctcgaa |
254 |
T |
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| Q |
265 |
tccccaaatcttttgctactcttccagcaaagctcgaaatt-ccatcggcaattatgcaagtaactggaa |
333 |
Q |
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| T |
253 |
tgcccaaatctttagccactcttccagcaaag-tcataattaccatcagcaattatgcaagtaactggaa |
185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 333
Target Start/End: Complemental strand, 353 - 185
Alignment:
| Q |
165 |
ttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagttcttgaa |
264 |
Q |
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||||||||||| |||| |||||| || || |||||||| ||| |||| |||||| ||| || ||| ||| ||||| ||||||| || ||| ||| |
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| T |
353 |
ttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaacccacaagtagaagctgtccaaagttgtatctctcgaa |
254 |
T |
|
| Q |
265 |
tccccaaatcttttgctactcttccagcaaagctcgaaatt-ccatcggcaattatgcaagtaactggaa |
333 |
Q |
| |
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| ||||||||||| || ||||||||||||||| || |||| ||||| |||||||||||||||||||||| |
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| T |
253 |
tgcccaaatctttagccactcttccagcaaag-tcataattaccatcagcaattatgcaagtaactggaa |
185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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