View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_10 (Length: 404)
Name: NF10789_10
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_10 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 48354150 - 48354249
Alignment:
| Q |
143 |
gcactgactccatttatgttgcagcatgtcctccacgactcaataatatattgcctcctcctacgagaaattgaacataacattaatttcggaggatact |
242 |
Q |
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| T |
48354150 |
gcactgactccatttatgttgcagcatgtcctccacgactcaataatatattgcctcctcctacgagaaattgaacataacattaatttcggaggatact |
48354249 |
T |
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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 305 - 385
Target Start/End: Original strand, 48354288 - 48354368
Alignment:
| Q |
305 |
tcatgaacacaagaaacagtcctcagattcagaagagcctgtctcggcagtcatcaaagaattctaaggcaaagcaagagc |
385 |
Q |
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| T |
48354288 |
tcatgaacacaagaaacagtcctcagattcagaagagcctgtctcggcagtcatcgaagaattctaaggcaaagcaagagc |
48354368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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