View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_12 (Length: 385)
Name: NF10789_12
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 129 - 385
Target Start/End: Complemental strand, 22250126 - 22249872
Alignment:
| Q |
129 |
tattctaattgagatcgattatttggtgttatattttcatttttcatttgtaccaaaagtgtaatttcatttgtcctcctttttaaaatgcacatgggtt |
228 |
Q |
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| T |
22250126 |
tattctaattgagatcgattatt-gttgttaaattttcatttttcctttgtaccaaaagtgtaatttcatttgtcctcctttttaaaatgcacatgggtt |
22250028 |
T |
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| Q |
229 |
tggtcatgagattttttaccattttagaagtcatccgaataacaaaaagaaacaaattctcacctgctctgtttcacacaaatcatgtatctcacataag |
328 |
Q |
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| T |
22250027 |
tggtcatgagattttttactattttagaagtcatctggataacaaaaagaaacaaattctcacctgctc-gaatcacacaaatcatgtatctcacataag |
22249929 |
T |
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| Q |
329 |
acacatatatcatgattctccctattttataccaaaaacaacaacgagtgctataac |
385 |
Q |
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| T |
22249928 |
acacatatatcatgattctccctattttataccaaaaacaacaacgagtgctataac |
22249872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 22250504 - 22250408
Alignment:
| Q |
32 |
aaatatacagctatcgcagtaaattctattaacaacatactgaatgaaaacattcagcatttcagatatctttctctgtcaaccatgtataattttc |
128 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22250504 |
aaatatacagctatcgtagtgtattttattaacaacatactgaatgaaaacattcagcatttcagatatctttctctgtcaaccatgtataattttc |
22250408 |
T |
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