View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_15 (Length: 357)
Name: NF10789_15
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_15 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 3941994 - 3941667
Alignment:
| Q |
14 |
aattcaaaatgcatgttatcttacaaggcaacgaattccaaggcatgtgttatttgagtgaacctcttaacattatataaatagtattcttcaaatacac |
113 |
Q |
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| T |
3941994 |
aattcaaaatacatgttatcttacaaggcaacgaattccaaggcatgtgttatttgagtgaaccttttaacattatataaatagtattcttcaa--acac |
3941897 |
T |
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| Q |
114 |
aacttccatatgactcctattttattaatttctcaaatataataacaacaattgatcttgcagttttatttaatttcctaagtnnnnnnnnnncacaagt |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3941896 |
aacttccatatgactcctattttattattttctcaaagataataacaacaattgatcttgcagttttatttaatttcctaagt-aaaaaaaaacacaag- |
3941799 |
T |
|
| Q |
214 |
ttttacagagaaataaggatcactagatgagggaggagatcaactatgacttcatttcctttcaatgtcacccctattccttaagagaaagtaactcatt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3941798 |
ttttacagagaaataaggatcactagatgagggaggagatcgactatgacttcatttcctttcaatgtcacccctattccttaagagaaagtaactcatt |
3941699 |
T |
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| Q |
314 |
gaaaaaacacaagttacattttcatcaatatt |
345 |
Q |
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||||||||||||||| |||||||||||||||| |
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| T |
3941698 |
gaaaaaacacaagttgcattttcatcaatatt |
3941667 |
T |
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