View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_17 (Length: 339)
Name: NF10789_17
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_17 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 29740345 - 29740036
Alignment:
| Q |
20 |
acaaaagagtgtggtgaaaggatttatagggttaaaagaatcatcaaatgtgcatactaaatgcatgattggaaatcaacacaaaaaaccattcctagag |
119 |
Q |
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| T |
29740345 |
acaaaatagtatggtgaaaggatttatagggttaaaagaatcatcaaatgtgcatactaaatgcatgattggaaatcaacacaaaaaaccattcctagag |
29740246 |
T |
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| Q |
120 |
agtacttcttggagaactactcaatgtatgtgaaataataaagaagtggagagtttagcttagttgggaagttgcaagaaaatataagaaaaatagattt |
219 |
Q |
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| T |
29740245 |
agtacttcttggagaactactcaatgtatgtgaaataataaagaagtggagagtttagcttagttgggaagttgcaagaaaatataagaaaaatagattt |
29740146 |
T |
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| Q |
220 |
gaaaaaacattcgattaatataaggggtggggttgaaaaaacattttttgacgggccatctcatcaactcgctaaggggtggggtgaaaatttgaactcg |
319 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29740145 |
gaaaaaacattcgattagtataaggggtggggttgaaaaaacattttttgacgggccatctcatcaactcgctaaggggtggggtgaaaatttgaactcg |
29740046 |
T |
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| Q |
320 |
accacctatg |
329 |
Q |
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|||| ||||| |
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| T |
29740045 |
accatctatg |
29740036 |
T |
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