View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_18 (Length: 335)
Name: NF10789_18
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_18 |
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| [»] chr8 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 20208670 - 20208984
Alignment:
| Q |
21 |
cagagagagagatcaacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttctcggtttcatt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20208670 |
cagagagagagatcaacaaaaatgaaaatgtgcatgcataccttcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttttcggtttcatt |
20208769 |
T |
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| Q |
121 |
ccattctttctctaattgccacccggactcgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtct |
220 |
Q |
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| T |
20208770 |
ccattctttctctaattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtct |
20208869 |
T |
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| Q |
221 |
ttgcatacgtcgggttgataatcgattcctgatgaaactctaatatgagttgaaggtcggagatgaccgtgtgtcgacccaccggttccctcgagactcg |
320 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
20208870 |
ttgcataggtcgggttgataatcgattcttgatgaaactctaatatgagttgaaggtcggagaggaccgtgtgtcgacccaccagttccctcgagactcg |
20208969 |
T |
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| Q |
321 |
tttcagtctccaaag |
335 |
Q |
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||||||||||||||| |
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| T |
20208970 |
tttcagtctccaaag |
20208984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 83 - 335
Target Start/End: Original strand, 20228440 - 20228692
Alignment:
| Q |
83 |
acaaaccatcagcgcaccctcctcttctcggtttcattccattctttctctaattgccacccggactcgtaatcagttcggtcgtgcaaaaacttgcatg |
182 |
Q |
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| T |
20228440 |
acaaaccatcagcgcaccctcctcttttcggtttcattccattctttctctaattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatg |
20228539 |
T |
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| Q |
183 |
aatcgccgtagccacaatatccggtctccttgaagtctttgcatacgtcgggttgataatcgattcctgatgaaactctaatatgagttgaaggtcggag |
282 |
Q |
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| T |
20228540 |
aatcgccgtagccacaatatccggtctccttgaagtctttgcataggtcgggttgataatcgattcttgatgaaactctaatatgagttgaaggtcggag |
20228639 |
T |
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| Q |
283 |
atgaccgtgtgtcgacccaccggttccctcgagactcgtttcagtctccaaag |
335 |
Q |
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| T |
20228640 |
aggaccgtgtgtcgacccaccagttccctcgagactcgtttcagtctccaaag |
20228692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 20211939 - 20211999
Alignment:
| Q |
22 |
agagagagagatcaacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaa |
82 |
Q |
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| T |
20211939 |
agagagagagatcaacaaaaatgaaaatgtgaatgcataccttcatcgtcactctcgtcaa |
20211999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 44293182 - 44293496
Alignment:
| Q |
21 |
cagagagagagatcaacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttctcggtttcatt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44293182 |
cagagagagagatcaacaaaaatgaaaatgtgcatgcataccttcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttttcggtttcatt |
44293281 |
T |
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| Q |
121 |
ccattctttctctaattgccacccggactcgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtct |
220 |
Q |
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| T |
44293282 |
ccattctttctctaattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtct |
44293381 |
T |
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| Q |
221 |
ttgcatacgtcgggttgataatcgattcctgatgaaactctaatatgagttgaaggtcggagatgaccgtgtgtcgacccaccggttccctcgagactcg |
320 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
44293382 |
ttgcataggtcgggttgataatcgattcttgatgaaactctaatatgagttgaaggtcggagaggaccgtgtgtcgacccaccagttccctcgagactcg |
44293481 |
T |
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| Q |
321 |
tttcagtctccaaag |
335 |
Q |
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| T |
44293482 |
tttcagtctccaaag |
44293496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 107 - 334
Target Start/End: Original strand, 44484498 - 44484722
Alignment:
| Q |
107 |
ttctcggtttcattccattctttctctaattgccacccggactcgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgta-gccacaatatccg |
205 |
Q |
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||||||||||| ||||||| || || |||||||| |||| |||||| |||||||||||||||||||| ||||||||| ||| |||||||||||| |
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| T |
44484498 |
ttctcggtttccctccattccttatccaattgcca----gacttgtaatcggttcggtcgtgcaaaaacttacatgaatcgttgtatgccacaatatcca |
44484593 |
T |
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| Q |
206 |
gtctccttgaagtctttgcatacgtcgggttgataatcgattcctgatgaaactctaatatgagttgaaggtcggagatgaccgtgtgtcgacccaccgg |
305 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
44484594 |
gtctccttgaagtctttgcataggtcgggttgataatcgattcttgatgaaactctaatatgagttgaaggtcggagaggaccgtgtgtcaacccaccgg |
44484693 |
T |
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| Q |
306 |
ttccctcgagactcgtttcagtctccaaa |
334 |
Q |
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| T |
44484694 |
ttccctcgagactcgtttcagtctccaaa |
44484722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 44296451 - 44296511
Alignment:
| Q |
22 |
agagagagagatcaacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaa |
82 |
Q |
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| T |
44296451 |
agagagagagatcaacaaaaatgaaaatgtgaatgcataccttcatcgtcactctcgtcaa |
44296511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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