View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_19 (Length: 325)
Name: NF10789_19
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_19 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 42448491 - 42448795
Alignment:
| Q |
1 |
gatttaactttactagaactcttttgttatgatactattgcatcaatattgaatggttttggtgcagtttaataaaattttgttttttcaaaacaaaaac |
100 |
Q |
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| T |
42448491 |
gatttaactttactagaactcttttgttatgatactattgcatcaatattgaatggttttggtgcagtttaataaaattttgttttttcaaaacaaaaac |
42448590 |
T |
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| Q |
101 |
ttaacaccatatatatattgagagaatgtcaaaaaatagagtaatgttaaattcaacataatctcacaataggttaggtt----tctctaacagtaaaca |
196 |
Q |
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| T |
42448591 |
ttaacaccatatatatattgagaggatgtcaaaaaatagagtaatgttaaattcaacataatctcacaataggttaggtttcgatctctaacagtaaaca |
42448690 |
T |
|
| Q |
197 |
aatccaccattaaaataaacccagatattatttgtctagcaaagaaataagtaaaaataaacttaaacgggtcagccggacaggcttaactagtatacat |
296 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42448691 |
aattcaccattaaaataaacccagatattatttgtctagcaaagaaataagtaaaaataaacttaaacgggtcagccggacaggcttaactagtatacat |
42448790 |
T |
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| Q |
297 |
ctgtg |
301 |
Q |
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||||| |
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| T |
42448791 |
ctgtg |
42448795 |
T |
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