View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_20 (Length: 324)
Name: NF10789_20
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_20 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 41747987 - 41748292
Alignment:
| Q |
1 |
gataagagaccccaaactcaaatttcgacggtggttgggaacttacaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgt |
100 |
Q |
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| T |
41747987 |
gataagagaccccaaactcaaatttcgacggtggttgggaacttacaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgt |
41748086 |
T |
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| Q |
101 |
ggtgcagacgcgcttacgaatttcattcaacccacgacaaagaaggttgttataaactccagcagcgatgaatgcgttgtttctgccacgtcagtacttc |
200 |
Q |
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| T |
41748087 |
ggtgcagacgcgcttacgaatttcattcaacccacgacaaagaaggttgttataaactccagcagcgatgaatgcgttgtttctgccacgtcagtacttc |
41748186 |
T |
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| Q |
201 |
aatgttgtacttcttcctcagaaggaggtgaatccgtaacagtaaaagacaatgttatcgttccaatgagtactgaatctttacgtgaatgtgaaaatga |
300 |
Q |
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| T |
41748187 |
aatgttgtacttcttcctcagaaggaggtgaatccgtaacagtaaaagacaatgttatcgttccaatgagtactgaatctttacgtgaatgtgaaaatga |
41748286 |
T |
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| Q |
301 |
atgttc |
306 |
Q |
| |
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|||||| |
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| T |
41748287 |
atgttc |
41748292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 8584973 - 8585005
Alignment:
| Q |
32 |
tggttgggaacttacaacactgctgaagaagct |
64 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
8584973 |
tggttgggaacttacaacagtgctgaagaagct |
8585005 |
T |
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