View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_22 (Length: 307)
Name: NF10789_22
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_22 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 279
Target Start/End: Complemental strand, 38320520 - 38320243
Alignment:
| Q |
2 |
agccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaag |
101 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320520 |
agccaaatcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaag |
38320421 |
T |
|
| Q |
102 |
accttcatgaagttactcataccctcgcgctcnnnnnnntcaaagggaaaatcatttgaaaggatcatagaagcacaccttttaaccaaccataattcat |
201 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
38320420 |
accttcatgaagttactcataccctcgcgctcaaaaaaatcaaagggaaaatcatttgaaaggatcatagaagcacaccttttaactaaccataattgat |
38320321 |
T |
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| Q |
202 |
ctctctcgacaatagattccacattttcttgtgatatttcttcaatgtcctaaattacatttcaaaactgttaattat |
279 |
Q |
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| T |
38320320 |
ctatctcgccaatagattccacattttcttgtgatatttcttcaatgtcctaaattacatttcaacactgttaattat |
38320243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 178
Target Start/End: Complemental strand, 38305694 - 38305518
Alignment:
| Q |
2 |
agccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaag |
101 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| |||| ||||| ||||||||||||| |||||||| || |||||||| |||| ||||||||||||| |
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| T |
38305694 |
agccaattcttgtttaagcttcagtttctctttcatgtataaatcagagacataagcctcaataacatctacaggaggcaaaacaatatttggatttaag |
38305595 |
T |
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| Q |
102 |
accttcatgaagttactcataccctcgcgctcnnnnnnntcaaagggaaaatcatttgaaaggatcatagaagcaca |
178 |
Q |
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| T |
38305594 |
accttcatgaagttcctcatcccctcgcgctcaaaaaactcaaagggaaaatcatttgaaaggatcatagaagcaca |
38305518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 38316422 - 38316322
Alignment:
| Q |
2 |
agccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaag |
101 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||||||||||||| ||| |||||||||| |||||||||| | ||||| ||||||||||||||||||||| |
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| T |
38316422 |
agccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcggaggtataacagcatttggatttaag |
38316323 |
T |
|
| Q |
102 |
a |
102 |
Q |
| |
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| |
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|
| T |
38316322 |
a |
38316322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 38313009 - 38312910
Alignment:
| Q |
2 |
agccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaag |
101 |
Q |
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||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||| || ||||||| ||||||||||||| |||||||||||||| |
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| T |
38313009 |
agccaattcttgcttaagcttgagtttctgattcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaag |
38312910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 38325267 - 38325169
Alignment:
| Q |
2 |
agccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaa |
100 |
Q |
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|||||||| ||||||||||| |||| ||||| ||||||||| | ||||||||||| |||||||||| ||||||| |||||||||||| ||||||| |
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| T |
38325267 |
agccaattgttgtttaagcttagatttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggtataacagcatttcgatttaa |
38325169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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