View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_5 (Length: 637)
Name: NF10789_5
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_5 |
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Alignment Details
Target: chr1 (Bit Score: 597; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Original strand, 4116608 - 4117224
Alignment:
| Q |
1 |
catatgtggttttatcaaggtcgtttcgcaatgaagacctgtaaaatgtacacaacttagtttcatgagcttatatactagaatttcctgcaatcaggaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4116608 |
catatgtggttttatcaaggtcatttcgcaatgaagacctgtaaaatgtacacaacttagtttcatgagcttatagactagaatttcctgcaatcaggaa |
4116707 |
T |
|
| Q |
101 |
aagcacacatgcgcgtattgaagggatgtcgaccattgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccagatcgttatcaa |
200 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116708 |
aagcacacatgcgcgtattgaagtgatgtcgaccattgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccagatcgttatcaa |
4116807 |
T |
|
| Q |
201 |
atgatcgagattcataactacgtgacttccgaaaatcaaaatccctcgctatagtctataagtggttcaaactcaatctcattgaaaagtgaaatttatg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4116808 |
atgatcgagattcataactacgtgacttccgaaaatcaaaatccctcgctatagtctataagaggttcaaactcaatctcattgaaaagtgaaatttatg |
4116907 |
T |
|
| Q |
301 |
caatgcaaattaaattagagaatgttataaataacctgctctggtcactgcacatcagacataaatatctatttgacgctctaaatatttggaaagacac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116908 |
caatgcaaattaaattagagaatgttataaataacctgctctggtcactgcacatcagacataaatatctatttgacgctctaaatatttggaaagacac |
4117007 |
T |
|
| Q |
401 |
tgctgtttgctctgtcaaatcctttgaagctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttga |
500 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117008 |
tgctgtttcctctgtcaaatcctttgaagctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttga |
4117107 |
T |
|
| Q |
501 |
ggatcaacttcactaggatcttctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaagttcaaattggaaaatg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117108 |
ggatcaacttcactaggatcttctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaagttcaaattggaaaatg |
4117207 |
T |
|
| Q |
601 |
attatcattgatgatgt |
617 |
Q |
| |
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||||||||||||||||| |
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| T |
4117208 |
attatcattgatgatgt |
4117224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 423 - 583
Target Start/End: Original strand, 4136891 - 4137048
Alignment:
| Q |
423 |
tttgaagctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatctt |
522 |
Q |
| |
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||||| ||||||||| ||||||||| |||||||| ||||| |||||||||||| ||||| |||| ||| |||||||||||||||||| || || |
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| T |
4136891 |
tttgatgctaaagcttgcaaaccaaatggtcctatcatgccatttcttgatgcatattgttctttacagagttcttgaggatcaacttcacttgg---tt |
4136987 |
T |
|
| Q |
523 |
ctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaa |
583 |
Q |
| |
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||| | | ||| |||||| ||| | |||||||||||||| ||||| |||||| ||||||| |
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|
| T |
4136988 |
ctagcaactcagcactttgtagattgggtagctcaaacaagacttccacatcagccttaaa |
4137048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 580
Target Start/End: Original strand, 4141803 - 4141951
Alignment:
| Q |
429 |
gctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatcttctaacc |
528 |
Q |
| |
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||||||||| ||||||||| || ||||| |||| || ||||||||| ||||| |||| ||| |||||||||||||||||| || ||||| | |
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| T |
4141803 |
gctaaagcttgcaaaccaaatggccctatcatgccttttattgatgcatattgttctttacagagttcttgaggatcaacttcacttgg---ttctagca |
4141899 |
T |
|
| Q |
529 |
agtcaccactttctagctcaggtagctcaaacaacacttctacatcaacctt |
580 |
Q |
| |
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||| |||||||||| ||||||||||||||||| ||||| |||||| |||| |
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| T |
4141900 |
cctcagcactttctagatcaggtagctcaaacaagacttccacatcagcctt |
4141951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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