View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_7 (Length: 556)
Name: NF10789_7
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_7 |
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| [»] scaffold0019 (3 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 528
Target Start/End: Original strand, 178015 - 178537
Alignment:
| Q |
7 |
tcaatgagatggacatcatcatttgttagcggaattctacccgtgtaatttccctctctatccgatcaacatcccttcaaattctaaccctccgaaattg |
106 |
Q |
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|||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
178015 |
tcaatgtgaaggtcatcctcatttgttagcggaattctacccgtgtaatttccctctctatccgatcaacatcccttcaaattctgaccctcctaaattg |
178114 |
T |
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| Q |
107 |
catctctcttaaaacaacataaaaccttagcccgactca--atgttaaaagcttgctctcaaacattataaattgtgttgcattgttaatcacataatac |
204 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
178115 |
catctctcttaaaacaacatgaaaccttagcccgactcacaatgttaaaagcttgctctcaaacattataaattgtgttgcattgttaatcacataatac |
178214 |
T |
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| Q |
205 |
agaattgatgtgtacgctataaaagaaaaaattgcatttaatgttcatccattacaattgaaatttgatacatttcactaatcaaactattgagcannnn |
304 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
178215 |
agaattgatgtgttcgctataaaagaaaaaattgcatttaattttcatccattacaattgaaatttgatacatttcactaatcaaactattgagca-ttt |
178313 |
T |
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| Q |
305 |
nnnnnggttttnnnnnnngcatcttctannnnnnngagtcttagtcaaattacttttgcctccttagagtttactttcacaaaataggttaaagcatgca |
404 |
Q |
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| T |
178314 |
tttttgtttttaaaaaaagcatcttctatttttttgagtcttagtcaaattacttttgcctccttagagtttactttcacaaaataggttaaagcatgca |
178413 |
T |
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| Q |
405 |
ttccttgcatttggtttttggcttctgtaacaaacaacataaaggaatccagtgtataaaatagcaatgtactttgaatatataaaaggaggaggagaag |
504 |
Q |
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| T |
178414 |
ttccttgcatttggtttttggcttctgtaacaaacaacataaaggaatctagtgtataaattagcaatgtactttgaatatataaaaggaggaggagaag |
178513 |
T |
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| Q |
505 |
actgtccactggggaaggaacttt |
528 |
Q |
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| T |
178514 |
actgtccgctggggaaggaacttt |
178537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 26 - 264
Target Start/End: Original strand, 149230 - 149470
Alignment:
| Q |
26 |
catttgttagcggaattctacccgtgtaatttccctctctatccgatcaacatcccttcaaattctaaccctccgaaattgcatctctcttaaaacaaca |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | || || |||||||||||||||||| |||||| |
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| T |
149230 |
catttgttagcggaattctacccgtgtaatttccctctctatccgatcaacatgccttcaaattatgatccgcctaaattgcatctctcttaagacaaca |
149329 |
T |
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| Q |
126 |
taaaaccttagcccgactca--atgttaaaagcttgctctcaaacattataaattgtgttgcattgttaatcacataatacagaattgatgtgtacgcta |
223 |
Q |
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| T |
149330 |
tgaaaccttagccctattcacaatgttaaaagcttgctctcaaacattataaattgtgttccattgtaaatcacataatacaaaattgatgtgttcgcta |
149429 |
T |
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| Q |
224 |
taaaagaaaaaattgcatttaatgttcatccattacaattg |
264 |
Q |
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| T |
149430 |
taaaataaaaaattgcatttaatgttcatccattacaattg |
149470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 340 - 528
Target Start/End: Original strand, 149491 - 149679
Alignment:
| Q |
340 |
gagtcttagtcaaattacttttgcctccttagagtttactttcacaaaataggttaaagcatgcattccttgcatttggtttttggcttctgtaacaaac |
439 |
Q |
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| T |
149491 |
gagtcttagtcaatttacttttgcctccttagagtttactttaacaaaataggttaaagcatgtattccttgcatttggtttttggcttctgtaacaaac |
149590 |
T |
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| Q |
440 |
aacataaaggaatccagtgtataaaatagcaatgtactttgaatatataaaaggaggaggagaagactgtccactggggaaggaacttt |
528 |
Q |
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| T |
149591 |
aacgtaaaggaatccaatttataaaatagcaatgtactttgacaatataaaaggaggaggagaagactgtacactggggaagaaacttt |
149679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 33690285 - 33690023
Alignment:
| Q |
20 |
catcatcatttgttagcggaattctacccgtgtaatttccctctctatccgatcaacatcccttcaaattctaaccctccgaaattgcatctctcttaaa |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||| |
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| T |
33690285 |
catcctcatttgttagcggaattctacccgtgtaatttccatctctatccgatcaacataccttcaaattctgacccgccaaaattgcatctctcttaaa |
33690186 |
T |
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| Q |
120 |
acaacataaaaccttagcccgactc--aatgttaaaagcttgctctcaaacattataaattgtgttgcattgttaatcacataatacagaattgatgtgt |
217 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
33690185 |
acaacatgaaaccttagcccgactcctaatgttaaaagcttgctctcaaacattataaattgtgttgcattgtaaatcacataatacataattgatgtgt |
33690086 |
T |
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| Q |
218 |
acgctataaaagaaaaaattgcatttaatgttcatccattacaattgaaatttgatacatttc |
280 |
Q |
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| T |
33690085 |
tcgctataaaagaaaaaattgcatttaatgttcatccattacaattgaaatttgatacatttc |
33690023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 8942667 - 8942784
Alignment:
| Q |
101 |
aaattgcatctctcttaaaacaacataaaaccttagcccgactc--aatgttaaaagcttgctctcaaacattataaattgtgttgcattgttaatcaca |
198 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||||| || | ||||||||||||||||||| ||||||| |
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| T |
8942667 |
aaattgcatctctcttaaaacaacatgaaaacttagccagcctcccaatgttaaaagcttgctctcacacttgataaattgtgttgcattgtaaatcaca |
8942766 |
T |
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| Q |
199 |
taatacagaattgatgtgt |
217 |
Q |
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| T |
8942767 |
tactaca-aattgatgtgt |
8942784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 8942820 - 8942853
Alignment:
| Q |
227 |
aagaaaaaattgcatttaatgttcatccattaca |
260 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
8942820 |
aagagaaaattgcatttaatgttcatccattaca |
8942853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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