View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_8 (Length: 466)
Name: NF10789_8
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_8 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 44130508 - 44130078
Alignment:
| Q |
16 |
atgtggagggcataaaaaagtagacaccacagttttcatgataattcattcattcttcgatcccacaatagaaaaagggnnnnnnnnnnnnnnnnataga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
44130508 |
atgtggagggcataaaaaagtagacaccacagttttcatgataattcattcattcttcgatcccacaatagaaaagggggagagagagagaga--ataga |
44130411 |
T |
|
| Q |
116 |
gctatcaattactagctagtctctttctctttctcagagagagagatgatgatgatgatggcacgaacttccttggatttttcttcagcatttcaactac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44130410 |
gctatcaattactagctagtctctttctctttctcagagagagagatgatgatgatgatggcacgaacttccttggatttttcttcagcatttcaactac |
44130311 |
T |
|
| Q |
216 |
gacctcacccaacaacaatcatcattattccttcaccttccttccctttctctctgaccaatatccctaaccatcattacactcccacctcttcttttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44130310 |
gacctcacccaacaacaatcatcattattccttcaccttccttccctttctctctgaccaatatccctaaccatcattacactcccacctcttcttttat |
44130211 |
T |
|
| Q |
316 |
cacaaacatcatcattatcttccaccaaacctttgctaatgatgatcatcatccccttcaccatcacaaatacttccactcaaaa---------gaagaa |
406 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44130210 |
cacaaacatcatcattatcttccaccaaacttttgctaatgatgatcatcatccccttcaccatcacaaatacttccactcaaaagaagctgaagaagaa |
44130111 |
T |
|
| Q |
407 |
gaagatctagacggggaagacagagaaggaaga |
439 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44130110 |
gaagatctagacggggaagacagagaaggaaga |
44130078 |
T |
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