View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10789_9 (Length: 456)
Name: NF10789_9
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10789_9 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 36675558 - 36675229
Alignment:
| Q |
1 |
atctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtccaaaccatgcagttcatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675558 |
atctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtccaaaccatgcagttcatca |
36675459 |
T |
|
| Q |
101 |
acgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataattaaggacatgaaggaaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675458 |
acgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataattaaggacatgaaggaaaaaa |
36675359 |
T |
|
| Q |
201 |
ttaacaacaaatgttagtattgttaatttttacgttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcagcc |
300 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675358 |
ttaacaacaaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcagcc |
36675259 |
T |
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| Q |
301 |
ggcgatgacatttcctgaagtcaagaagga |
330 |
Q |
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| T |
36675258 |
ggcgatgacatttcctgaagtcaagaagga |
36675229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 36685640 - 36685311
Alignment:
| Q |
1 |
atctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtccaaaccatgcagttcatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685640 |
atctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtccaaaccatgcagttcatca |
36685541 |
T |
|
| Q |
101 |
acgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataattaaggacatgaaggaaaaaa |
200 |
Q |
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| T |
36685540 |
acgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataattaaggacatgaaggaaaaaa |
36685441 |
T |
|
| Q |
201 |
ttaacaacaaatgttagtattgttaatttttacgttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcagcc |
300 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685440 |
ttaacaacaaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcagcc |
36685341 |
T |
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| Q |
301 |
ggcgatgacatttcctgaagtcaagaagga |
330 |
Q |
| |
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| T |
36685340 |
ggcgatgacatttcctgaagtcaagaagga |
36685311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 446
Target Start/End: Complemental strand, 36675179 - 36675117
Alignment:
| Q |
380 |
attcctgaagtacatatatatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatg |
446 |
Q |
| |
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| T |
36675179 |
attcctgaagtac----atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatg |
36675117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 42224286 - 42224459
Alignment:
| Q |
1 |
atctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtccaaaccatgcagttcatca |
100 |
Q |
| |
|
||||||| |||||| |||| || |||||||| ||||| || | |||| ||||||||||| |||| ||||| || ||||| ||||||||||| | | |
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| T |
42224286 |
atctcaatcacacaacctgagccgttgatggttaccacgagcacgctgtccgggtgcaccataggcagaccgtatagtgtccataccatgcagttaacaa |
42224385 |
T |
|
| Q |
101 |
acgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctg |
174 |
Q |
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|| |||||||||||| | |||||| |||| ||||| ||||||||||| |||||| ||| ||| ||||||||| |
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| T |
42224386 |
gtgttgctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctg |
42224459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 25991738 - 25991706
Alignment:
| Q |
206 |
aacaaatgttagtattgttaatttttacgttaa |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
25991738 |
aacaaatgttagtattgttaatttttacgttaa |
25991706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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