View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10789_low_2 (Length: 236)

Name: NF10789_low_2
Description: NF10789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10789_low_2
NF10789_low_2
[»] chr8 (3 HSPs)
chr8 (114-224)||(42750212-42750323)
chr8 (1-41)||(42750391-42750431)
chr8 (124-157)||(5831546-5831579)
[»] chr2 (3 HSPs)
chr2 (114-157)||(31964545-31964588)
chr2 (124-157)||(19029973-19030006)
chr2 (124-157)||(43927545-43927578)
[»] chr1 (4 HSPs)
chr1 (124-157)||(21068704-21068737)
chr1 (124-157)||(46510473-46510506)
chr1 (124-157)||(46510689-46510722)
chr1 (120-157)||(51549616-51549653)
[»] scaffold0211 (1 HSPs)
scaffold0211 (114-157)||(15874-15917)
[»] chr7 (4 HSPs)
chr7 (114-157)||(40081898-40081941)
chr7 (124-157)||(11749894-11749927)
chr7 (124-157)||(25513608-25513641)
chr7 (124-157)||(43072867-43072900)
[»] chr6 (3 HSPs)
chr6 (114-157)||(6366679-6366722)
chr6 (114-151)||(9380955-9380992)
chr6 (117-157)||(19366943-19366983)
[»] chr5 (3 HSPs)
chr5 (114-157)||(3308654-3308697)
chr5 (124-157)||(20224947-20224980)
chr5 (124-157)||(38566689-38566722)
[»] chr4 (10 HSPs)
chr4 (114-157)||(6555873-6555916)
chr4 (124-159)||(17534418-17534453)
chr4 (114-157)||(26629247-26629290)
chr4 (114-157)||(26629436-26629479)
chr4 (124-157)||(8459592-8459625)
chr4 (124-157)||(34321017-34321050)
chr4 (124-157)||(35804163-35804196)
chr4 (124-157)||(36157254-36157287)
chr4 (114-158)||(315690-315734)
chr4 (117-157)||(36062954-36062994)
[»] scaffold0076 (1 HSPs)
scaffold0076 (124-157)||(16299-16332)
[»] scaffold0039 (1 HSPs)
scaffold0039 (115-160)||(53586-53631)
[»] chr3 (3 HSPs)
chr3 (124-157)||(36772562-36772595)
chr3 (124-157)||(41752493-41752526)
chr3 (124-157)||(45394166-45394199)


Alignment Details
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 42750323 - 42750212
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaaacc-nnnnnnnagaacatattttgttatcaccgcccnnnnnnngacgaagctacca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||||||||       |||||||||||||    
T  42750323 aaaatgaaactctgaatatttatagggaccatttacttgattaaaccttttttttagaacgtattttgttatcaccgcccagaaaaagacgaagctacca 42750224  T
Q  213 cagcaagttttt 224  Q
    ||||||||||||    
T  42750223 cagcaagttttt 42750212  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42750431 - 42750391
Alignment:
Q  1 tagtttattttgacaaataatttatgtaaatagtaattgca 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42750431 tagtttattttgacaaataatttatgtaaatagtaattgca 42750391  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 5831546 - 5831579
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  5831546 tctgaatatttatagggaccatttacttaattaa 5831579  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 31964545 - 31964588
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  31964545 aaaatgaaattctggatatttatagggaccatttacttgattaa 31964588  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 19030006 - 19029973
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  19030006 tctgaatatttatagggaccatttacttaattaa 19029973  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 43927578 - 43927545
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  43927578 tctgaatatttatagggaccatttacttaattaa 43927545  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 21068704 - 21068737
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    ||||||||||||||||||||||||||||||||||    
T  21068704 tctgaatatttatagggaccatttacttgattaa 21068737  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 46510506 - 46510473
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  46510506 tctgaatatttatagggaccatttacttaattaa 46510473  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 46510689 - 46510722
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  46510689 tctgaatatttatagggaccatttacttaattaa 46510722  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 51549653 - 51549616
Alignment:
Q  120 aaactctgaatatttatagggaccatttacttgattaa 157  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  51549653 aaactctaaatatttatagggaccatttacttaattaa 51549616  T

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Target: scaffold0211 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 15874 - 15917
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    ||||||||| |||| ||||||||||||||||||||||| |||||    
T  15874 aaaatgaaattctggatatttatagggaccatttacttaattaa 15917  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 40081898 - 40081941
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||    
T  40081898 aaaataaaattctgaatatttatagggaccatttacttaattaa 40081941  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 11749894 - 11749927
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||| |||||||||||||||||||||    
T  11749894 tctgaatatttacagggaccatttacttgattaa 11749927  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 25513608 - 25513641
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  25513608 tctgaatatttatagggaccatttacttaattaa 25513641  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 43072900 - 43072867
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  43072900 tctgaatatttatagggaccatttacttaattaa 43072867  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 6366679 - 6366722
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||    
T  6366679 aaaataaaattctgaatatttatagggaccatttacttaattaa 6366722  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 9380955 - 9380992
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttactt 151  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  9380955 aaaatgaaattctgaatatttataaggaccatttactt 9380992  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 19366943 - 19366983
Alignment:
Q  117 atgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    |||||| |||||||||||||||||||||||| ||| |||||    
T  19366943 atgaaattctgaatatttatagggaccattttcttaattaa 19366983  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 3308654 - 3308697
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    ||||||||| |||||||||||||||| ||||||||||| |||||    
T  3308654 aaaatgaaattctgaatatttataggaaccatttacttaattaa 3308697  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 20224947 - 20224980
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  20224947 tctgaatatttatagggaccatttacttaattaa 20224980  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 38566689 - 38566722
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  38566689 tctgaatatttatagggaccatttacttaattaa 38566722  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 6555916 - 6555873
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    ||||||||| |||| ||||||||||||||||||||||| |||||    
T  6555916 aaaatgaaattctggatatttatagggaccatttacttaattaa 6555873  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 17534418 - 17534453
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaaac 159  Q
    |||||||||||||||||||||||||||| |||||||    
T  17534418 tctgaatatttatagggaccatttacttaattaaac 17534453  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 26629290 - 26629247
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    ||||||||| | |||||||||||||||||||||||||| |||||    
T  26629290 aaaatgaaattttgaatatttatagggaccatttacttaattaa 26629247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 26629479 - 26629436
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    ||||||||| | |||||||||||||||||||||||||| |||||    
T  26629479 aaaatgaaattttgaatatttatagggaccatttacttaattaa 26629436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 8459592 - 8459625
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  8459592 tctgaatatttatagggaccatttacttaattaa 8459625  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 34321050 - 34321017
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  34321050 tctgaatatttatagggaccatttacttaattaa 34321017  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 35804196 - 35804163
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  35804196 tctgaatatttatagggaccatttacttaattaa 35804163  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 36157287 - 36157254
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  36157287 tctgaatatttatagggaccatttacttaattaa 36157254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 315734 - 315690
Alignment:
Q  114 aaaatgaaactctgaatatttatagggaccatttacttgattaaa 158  Q
    ||||||||| | || ||||||||||||||||||||||| ||||||    
T  315734 aaaatgaaattttggatatttatagggaccatttacttaattaaa 315690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 36062954 - 36062994
Alignment:
Q  117 atgaaactctgaatatttatagggaccatttacttgattaa 157  Q
    |||||| |||||||||||||| || ||||||||||||||||    
T  36062954 atgaaattctgaatatttataaggtccatttacttgattaa 36062994  T

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Target: scaffold0076 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 16332 - 16299
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  16332 tctgaatatttatagggaccatttacttaattaa 16299  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 53586 - 53631
Alignment:
Q  115 aaatgaaactctgaatatttatagggaccatttacttgattaaacc 160  Q
    |||| ||| |||||||||||||||| ||||||||||| ||||||||    
T  53586 aaataaaattctgaatatttataggcaccatttacttaattaaacc 53631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 36772595 - 36772562
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  36772595 tctgaatatttatagggaccatttacttaattaa 36772562  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 41752526 - 41752493
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  41752526 tctgaatatttatagggaccatttacttaattaa 41752493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 45394199 - 45394166
Alignment:
Q  124 tctgaatatttatagggaccatttacttgattaa 157  Q
    |||||||||||||||||||||||||||| |||||    
T  45394199 tctgaatatttatagggaccatttacttaattaa 45394166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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