View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1078_high_11 (Length: 300)

Name: NF1078_high_11
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1078_high_11
NF1078_high_11
[»] chr2 (24 HSPs)
chr2 (1-214)||(44753916-44754130)
chr2 (86-258)||(6402581-6402753)
chr2 (86-258)||(15911481-15911653)
chr2 (86-258)||(38207188-38207354)
chr2 (85-258)||(38707482-38707655)
chr2 (85-255)||(45116782-45116951)
chr2 (91-258)||(7943004-7943169)
chr2 (91-255)||(31994342-31994505)
chr2 (87-258)||(13278394-13278569)
chr2 (79-249)||(1210202-1210376)
chr2 (213-258)||(30490948-30490993)
chr2 (85-225)||(17304588-17304728)
chr2 (86-144)||(17138052-17138110)
chr2 (91-258)||(18137299-18137464)
chr2 (210-255)||(17137980-17138025)
chr2 (211-258)||(44759915-44759962)
chr2 (225-258)||(18963186-18963219)
chr2 (226-258)||(15113603-15113635)
chr2 (226-258)||(34948324-34948356)
chr2 (226-258)||(43333658-43333690)
chr2 (177-255)||(1114555-1114635)
chr2 (226-255)||(5464646-5464675)
chr2 (226-258)||(5939339-5939371)
chr2 (226-254)||(34906179-34906207)
[»] chr1 (32 HSPs)
chr1 (86-255)||(22858456-22858625)
chr1 (86-258)||(14587611-14587783)
chr1 (85-249)||(3517852-3518016)
chr1 (85-258)||(12700811-12700984)
chr1 (85-258)||(37951999-37952170)
chr1 (85-258)||(42882857-42883030)
chr1 (86-258)||(29961095-29961267)
chr1 (89-258)||(44496187-44496356)
chr1 (106-258)||(48965159-48965311)
chr1 (91-258)||(49851417-49851584)
chr1 (151-258)||(33801125-33801232)
chr1 (151-258)||(41723292-41723398)
chr1 (85-251)||(46597408-46597573)
chr1 (154-258)||(38860449-38860552)
chr1 (116-258)||(52632619-52632761)
chr1 (87-255)||(44757802-44757969)
chr1 (156-258)||(23984298-23984400)
chr1 (109-258)||(50262189-50262337)
chr1 (123-258)||(11952683-11952815)
chr1 (110-258)||(12528174-12528321)
chr1 (91-258)||(27216506-27216674)
chr1 (226-258)||(18272110-18272142)
chr1 (226-258)||(18276764-18276796)
chr1 (87-144)||(41086119-41086176)
chr1 (173-258)||(41086191-41086275)
chr1 (87-144)||(41090887-41090944)
chr1 (173-258)||(41090959-41091043)
chr1 (226-258)||(5750055-5750087)
chr1 (226-258)||(7199738-7199770)
chr1 (226-258)||(10313351-10313383)
chr1 (230-258)||(12525167-12525195)
chr1 (226-258)||(22335163-22335195)
[»] chr8 (20 HSPs)
chr8 (87-258)||(8240255-8240426)
chr8 (85-253)||(40105521-40105689)
chr8 (86-258)||(6346999-6347171)
chr8 (80-258)||(35684283-35684463)
chr8 (85-258)||(43098807-43098979)
chr8 (85-258)||(20091264-20091437)
chr8 (86-258)||(32946776-32946949)
chr8 (149-258)||(23144370-23144478)
chr8 (115-258)||(13546451-13546594)
chr8 (115-258)||(13677879-13678022)
chr8 (87-258)||(39318863-39319034)
chr8 (85-258)||(29544103-29544274)
chr8 (159-258)||(39260560-39260658)
chr8 (149-258)||(32337574-32337683)
chr8 (123-255)||(586676-586808)
chr8 (174-258)||(42132135-42132217)
chr8 (106-260)||(627097-627252)
chr8 (227-258)||(4258974-4259005)
chr8 (226-255)||(11991-12020)
chr8 (89-189)||(37098099-37098199)
[»] chr7 (18 HSPs)
chr7 (86-255)||(46254564-46254733)
chr7 (85-258)||(36312349-36312520)
chr7 (86-258)||(34848142-34848314)
chr7 (87-258)||(44862716-44862887)
chr7 (110-258)||(43269984-43270132)
chr7 (86-258)||(43457885-43458057)
chr7 (91-258)||(35794180-35794347)
chr7 (151-257)||(33950693-33950799)
chr7 (173-257)||(25529372-25529456)
chr7 (155-258)||(14816914-14817016)
chr7 (155-258)||(15263910-15264012)
chr7 (226-258)||(15032803-15032835)
chr7 (226-257)||(26791837-26791868)
chr7 (226-257)||(38257695-38257726)
chr7 (226-258)||(7255661-7255693)
chr7 (226-258)||(29332542-29332574)
chr7 (226-258)||(35585322-35585354)
chr7 (226-258)||(37998511-37998543)
[»] chr3 (33 HSPs)
chr3 (85-258)||(10509489-10509662)
chr3 (91-258)||(41193984-41194151)
chr3 (85-258)||(227328-227499)
chr3 (87-258)||(39586272-39586443)
chr3 (85-233)||(53814648-53814796)
chr3 (85-258)||(40936914-40937087)
chr3 (86-258)||(149025-149197)
chr3 (109-249)||(49166380-49166520)
chr3 (89-258)||(31765464-31765634)
chr3 (86-255)||(32529503-32529673)
chr3 (133-258)||(41174565-41174689)
chr3 (106-258)||(39353023-39353175)
chr3 (162-257)||(26502460-26502555)
chr3 (85-194)||(36403011-36403120)
chr3 (210-258)||(6936298-6936346)
chr3 (201-258)||(47646728-47646785)
chr3 (199-255)||(47013987-47014042)
chr3 (85-177)||(47646649-47646741)
chr3 (225-258)||(3733787-3733820)
chr3 (225-258)||(26982586-26982619)
chr3 (226-258)||(9126872-9126904)
chr3 (226-258)||(9134979-9135011)
chr3 (226-258)||(21450422-21450454)
chr3 (226-258)||(49327575-49327607)
chr3 (226-258)||(49440529-49440561)
chr3 (225-257)||(53393788-53393820)
chr3 (226-256)||(8486770-8486800)
chr3 (87-185)||(21450494-21450592)
chr3 (87-185)||(49440601-49440699)
chr3 (229-258)||(36402977-36403006)
chr3 (76-185)||(47375059-47375168)
chr3 (230-258)||(2182926-2182954)
chr3 (226-258)||(33186646-33186678)
[»] chr5 (30 HSPs)
chr5 (85-257)||(12723368-12723540)
chr5 (86-258)||(16513861-16514033)
chr5 (85-258)||(12784851-12785024)
chr5 (86-258)||(18808677-18808849)
chr5 (115-258)||(8734420-8734564)
chr5 (85-255)||(13822343-13822512)
chr5 (85-258)||(37030516-37030689)
chr5 (85-257)||(8197105-8197277)
chr5 (151-255)||(8301033-8301137)
chr5 (110-258)||(25977393-25977541)
chr5 (91-258)||(26278744-26278910)
chr5 (82-232)||(15858581-15858731)
chr5 (128-257)||(3556361-3556490)
chr5 (173-258)||(27114089-27114174)
chr5 (89-258)||(2606249-2606419)
chr5 (176-254)||(38679724-38679802)
chr5 (85-188)||(13654679-13654782)
chr5 (109-256)||(37883148-37883298)
chr5 (173-258)||(11720202-11720284)
chr5 (201-258)||(37012642-37012699)
chr5 (226-258)||(1711478-1711510)
chr5 (226-258)||(5344001-5344033)
chr5 (226-258)||(32746682-32746714)
chr5 (85-177)||(37012563-37012655)
chr5 (86-185)||(5344073-5344172)
chr5 (224-258)||(9715575-9715609)
chr5 (148-194)||(9715624-9715670)
chr5 (225-258)||(27948429-27948462)
chr5 (226-258)||(6432671-6432703)
chr5 (226-258)||(38984204-38984236)
[»] chr4 (36 HSPs)
chr4 (85-256)||(35158415-35158587)
chr4 (87-258)||(28781038-28781209)
chr4 (85-258)||(52417201-52417373)
chr4 (85-258)||(45029288-45029461)
chr4 (108-258)||(9036367-9036516)
chr4 (109-258)||(30003332-30003481)
chr4 (89-258)||(1602490-1602656)
chr4 (115-258)||(43842145-43842288)
chr4 (85-256)||(45228787-45228958)
chr4 (86-255)||(55136364-55136533)
chr4 (91-255)||(38551533-38551697)
chr4 (89-258)||(51538346-51538515)
chr4 (106-258)||(40727743-40727895)
chr4 (89-257)||(15543103-15543272)
chr4 (90-258)||(16451638-16451806)
chr4 (87-258)||(16023572-16023743)
chr4 (151-258)||(56463909-56464016)
chr4 (106-258)||(31092824-31092976)
chr4 (85-258)||(35320157-35320330)
chr4 (173-258)||(38218535-38218620)
chr4 (85-221)||(45458038-45458174)
chr4 (85-249)||(2016063-2016226)
chr4 (86-258)||(4190136-4190308)
chr4 (86-258)||(28311153-28311325)
chr4 (155-258)||(4047906-4048008)
chr4 (106-258)||(45924322-45924474)
chr4 (85-258)||(49374021-49374194)
chr4 (163-258)||(6963235-6963330)
chr4 (163-258)||(33280862-33280957)
chr4 (108-237)||(168832-168961)
chr4 (226-258)||(13721187-13721219)
chr4 (226-258)||(16684506-16684538)
chr4 (226-258)||(38990912-38990944)
chr4 (216-252)||(45461323-45461359)
chr4 (226-258)||(45659774-45659806)
chr4 (226-255)||(47985944-47985973)
[»] chr6 (10 HSPs)
chr6 (86-241)||(438743-438898)
chr6 (86-258)||(303452-303624)
chr6 (89-250)||(31271051-31271211)
chr6 (86-258)||(31723139-31723308)
chr6 (148-258)||(9305225-9305335)
chr6 (86-251)||(31318227-31318392)
chr6 (226-258)||(480159-480191)
chr6 (225-258)||(12305343-12305376)
chr6 (163-258)||(16395093-16395185)
chr6 (226-258)||(29435939-29435971)
[»] scaffold1301 (1 HSPs)
scaffold1301 (176-258)||(1449-1531)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44753916 - 44754130
Alignment:
Q  1 aagagaccagtctacagaggccccata-atagaacttctttatactcctaacaaagaataatagtcaaagatctggataattaagagactattacttttc 99  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  44753916 aagagaccagtctatagaggcccgatatatagaacttctttatactcctaacaaagaataataatcaaagatctggataattaagagactattccttttc 44754015  T
Q  100 ctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaag 199  Q
    ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||    
T  44754016 ctaccctgctgcctcctcgcgaaccctacaaaatttactaaaatatttctggtccggattacatgattcggaacagattgttagtgattttcggaaaaag 44754115  T
Q  200 aaatctggatcagat 214  Q
    ||||||||| |||||    
T  44754116 aaatctggaccagat 44754130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 6402581 - 6402753
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | |||  |||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||  |||||| ||||||||||    
T  6402581 gactattacttttcccaccatgcctcctcctcgcgcaccctgcaaaatttactaaaatatccctggttcggattacataattaagaacatattgttagtg 6402680  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    | || |||||| ||||||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  6402681 acttccggaaacagaaatcaggaccagatgttatgtaattttatgtgtctttctttgatgtcaagagtctctg 6402753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 15911481 - 15911653
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | |||||||| |||||||||||| ||||||||||||||||||  || ||| | |||||||||| | || |||||||||||||    
T  15911481 gactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaatataccttgtctgaattacataattcggatcagattgttagtg 15911580  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| |||||| |||||||  || |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  15911581 atttccggaaacagaaatccagaccagatgttatgtaattttctgtgtctttctttgatgccaagggtctctg 15911653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 38207188 - 38207354
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    |||||||| |||||| | | ||||||||||||||||| ||| |||||||||||||||||      ||| |||||||||||||| || |||||||||||||    
T  38207188 gactattatttttcccaccctgctgcctcctcgcgcatcctgcaaaatttactaaaata------gtctggattacataatccggatcagattgttagtg 38207281  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||| ||||||| ||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  38207282 attttcggaaacagaaatccggaccagatgttatgtaattttctgtatctttctttgatgtcaacggtctctg 38207354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 38707655 - 38707482
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| |   |||||||| ||||||||||||  ||||||||||||||||    |||||||||||||||||||| || ||||||||||||    
T  38707655 agactattacttttcccactctgctgccttctcgcgcaccctgaaaaatttactaaaatacccatggtccggattacataatccggatcagattgttagt 38707556  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||| |||||| | ||||  |||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38707555 gatttccggaaacataaattcggacaagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 38707482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 85 - 255
Target Start/End: Original strand, 45116782 - 45116951
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | ||||| || ||||||| |||| |||||||||||||||||   |||||||||||||||||||||  | ||||||||||||    
T  45116782 agactattacttttcccaccatgctgtcttctcgcgcgccctgcaaaatttactaaaataac-ctggtccggattacataatccgaaccagattgttagt 45116880  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    ||||| |||||  ||||||| |||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  45116881 gatttccggaagcagaaatccggactagatgttatgtaattttatgtgtctttctttgatgtcaagggtct 45116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 258
Target Start/End: Complemental strand, 7943169 - 7943004
Alignment:
Q  91 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 190  Q
    |||||||||| | | |||||||| |||||||  ||| |||||||||||||||||   ||||||| | ||||||||||| ||  ||||||||||||||||     
T  7943169 ttacttttcccaccgtgctgccttctcgcgc--cctgcaaaatttactaaaatacccctggtcctgtttacataatccggactagattgttagtgatttc 7943072  T
Q  191 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||| |||||| ||||||||| ||| ||  |||||||||||||||||||||||||| ||||||||    
T  7943071 cggaaaacgaaatccggatcagatattacgtgcttttttgtgtctttctttgatgtcaatggtctctg 7943004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 255
Target Start/End: Complemental strand, 31994505 - 31994342
Alignment:
Q  91 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 190  Q
    |||||||| ||| | |||||||| ||||||| |||| ||| ||| |||||||||  || |||| |||||| ||||||| || |||||||||| || |||     
T  31994505 ttactttttctaccctgctgccttctcgcgcgccctgcaatattcactaaaatacctcaggtctggattatataatccggaccagattgtta-tgctttc 31994407  T
Q  191 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    | ||||| ||||| |||| ||||||||||||  ||||||||||||||||||||||| ||||||||    
T  31994406 cagaaaacgaaatatggaccagatgttatgtgcttttttgtgtctttctttgatgttaagggtct 31994342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 258
Target Start/End: Original strand, 13278394 - 13278569
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 186  Q
    |||||||||||| | | | ||||| || ||||||| ||||  ||||||||| ||||||  |||||||||||||| ||||| | ||  |||||||||||||    
T  13278394 actattactttttccaccctgctgtcttctcgcgcgccctgtaaaatttacaaaaatacctctggtccggattatataattcggactagattgttagtga 13278493  T
Q  187 ttttcggaaaaagaaatctggatcagatgtta----tgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    | | || |||| |||||| ||| |||||||||    |||  |||||||||||||||||||||||||| ||||||||    
T  13278494 tatccgaaaaacgaaatccggaccagatgttaattatgtgtttttttgtgtctttctttgatgtcaatggtctctg 13278569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 249
Target Start/End: Complemental strand, 1210376 - 1210202
Alignment:
Q  79 attaagagactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagatt 178  Q
    ||||| |||||||||||||| | | | |||||||| ||  ||||||||  |||||||| |||||||  ||||||| ||| |||||||| |  | ||||||    
T  1210376 attaaaagactattactttttccaccctgctgccttcttacgcaccctgtaaaatttattaaaatagctctggtcgggaatacataattcgtatcagatt 1210277  T
Q  179 gttagtgattttcgg----aaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaa 249  Q
    |||||||||||  ||    ||||| ||||   || ||||||||||||  |||| |||||||||||||||||||||    
T  1210276 gttagtgatttctggaagaaaaaataaattcagaccagatgttatgtgcttttctgtgtctttctttgatgtcaa 1210202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 30490993 - 30490948
Alignment:
Q  213 atgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  30490993 atgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 30490948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 17304588 - 17304728
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    ||||||||| |||| | | | |||||||| ||||||| |||| ||||||| | |||||||   |||||| ||||||||||||    | ||||||||||||    
T  17304588 agactattattttttccaccctgctgccttctcgcgcgccctgcaaaattaattaaaataaccctggtctggattacataatttgaaccagattgttagt 17304687  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaatt 225  Q
    ||||| || ||| ||||||| ||| ||||||||| ||||||    
T  17304688 gatttccgaaaacagaaatccggaccagatgttacgtaatt 17304728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 17138110 - 17138052
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaata 144  Q
    ||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||||    
T  17138110 gactattacttttcccaccctgctgcctcctcgcgcgccctataaaatttactaaaata 17138052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 18137299 - 18137464
Alignment:
Q  91 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 190  Q
    |||||||||| | | |||||||| ||||||| || | |||||||| | ||||||   ||||| ||||||| ||||||| ||  |||||||||||||        
T  18137299 ttacttttcccaccctgctgccttctcgcgcgccttgcaaaatttccaaaaatacccctggttcggattatataatccggacaagattgttagtgac--- 18137395  T
Q  191 cggaaaaagaaatctggatcagat-gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||| |||||  ||| || || |||||||  ||||||||| ||||||||||||||| |||||||||    
T  18137396 cggaaaacgaaattcggaccatattgttatgtgcttttttgtgcctttctttgatgtcaggggtctctg 18137464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 17138025 - 17137980
Alignment:
Q  210 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  17138025 cagatgttatgtaattttctgtgtctttatttgatgtcaagggtct 17137980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 44759915 - 44759962
Alignment:
Q  211 agatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| |||||||||||| |||||||||||||||| |||||||||||||    
T  44759915 agatattatgtaattttctgtgtctttctttgatatcaagggtctctg 44759962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 18963186 - 18963219
Alignment:
Q  225 tttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||||||||||||    
T  18963186 tttttgtgtctttctttgatgtcaagggtctctg 18963219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 15113635 - 15113603
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  15113635 ttttgtgtctttctttgatgtcaagggtctctg 15113603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 34948324 - 34948356
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  34948324 ttttgtgtctttctttgatgtcaagggtctctg 34948356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 43333658 - 43333690
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  43333658 ttttgtgtctttctttgatgtcaagggtctctg 43333690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 1114555 - 1114635
Alignment:
Q  177 ttgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtct--ttctttgatgtcaagggtct 255  Q
    ||||||||||| | | || ||||||||| ||| ||||||||||||  ||||||||||||  || ||| |||||||||||||    
T  1114555 ttgttagtgatatccagacaaagaaatccggaccagatgttatgtgcttttttgtgtcttctttttttatgtcaagggtct 1114635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 5464675 - 5464646
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtct 255  Q
    ||||||||||||||||||||||||||||||    
T  5464675 ttttgtgtctttctttgatgtcaagggtct 5464646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 5939371 - 5939339
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||| ||||    
T  5939371 ttttgtgtctttctttgatgtcaagggtttctg 5939339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 34906179 - 34906207
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtc 254  Q
    |||||||||||||||||||||||||||||    
T  34906179 ttttgtgtctttctttgatgtcaagggtc 34906207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 22858456 - 22858625
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||    
T  22858456 gactattacttttctcatcttgctgcctcctcgcgcaccctacaaaatttactaaaatacctctggtccggattacataatctggaacagattgttagtg 22858555  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    | |||| |||| | ||||| | | |||||||||||||||||| |||||||||||||||||||||||||||    
T  22858556 actttcagaaacataaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtct 22858625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 86 - 258
Target Start/End: Complemental strand, 14587783 - 14587611
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | |||||||| ||| |||||||| |||||||||||||||||    |||||||||||||||||||| || |||||||||||||    
T  14587783 gactattacttttcccaccctgctgccttctcacgcaccctgcaaaatttactaaaatacccatggtccggattacataatccggatcagattgttagtg 14587684  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| |||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14587683 atttccggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 14587611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 3518016 - 3517852
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||||||| |||||||||||| ||||||||||||||||| | ||||||||||| ||||||||| || ||||||||||||    
T  3518016 agactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaatactcctggtccggatcacataatccggatcagattgttagt 3517917  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaa 249  Q
    ||||| |||||| ||||||  ||| |||||||||||||||||| |||||||||||||||||||||    
T  3517916 gatttccggaaacagaaattcggaccagatgttatgtaattttctgtgtctttctttgatgtcaa 3517852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 12700984 - 12700811
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||| | ||  |||||||||||||||  |||| |||||||||||||||||| |||||| ||||||||||||||  |   |||||||||||    
T  12700984 agactattactttttccattctgctgcctcctcgcgtgccctgcaaaatttactaaaatatctctggttcggattacataatctgggttagattgttagt 12700885  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||| |||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12700884 gatttccggaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttgatatcaagggtctctg 12700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 37951999 - 37952170
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||||||| |||| ||||||| |||||||||||||||||  | |||| |||||||||||||||  | ||||||||||||    
T  37951999 agactattacttttcc-accctgctgccttctcgtgcaccctgcaaaatttactaaaatacat-tggttcggattacataatccgaatcagattgttagt 37952096  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||| || ||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  37952097 gatttccgaaaacagaaatctggaccagatattatgtaattttctgtgtctttctttgatgtcaagggtctctg 37952170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 42883030 - 42882857
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | ||||||||||||||||||  ||| |||||||||||||||||   ||| | ||||| ||||||||  || ||||||||||||    
T  42883030 agactattacttttcccaccttgctgcctcctcgcgcgtcctgcaaaatttactaaaatacccctgtttcggatcacataatctggaccagattgttagt 42882931  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
     ||||||||||| ||||||  ||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  42882930 tattttcggaaacagaaattcggaccagatgttatgtaattttttttatctttctttgatgtcaagggtctctg 42882857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 29961095 - 29961267
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    |||||||| |||||| | | |||||||| |||||||||| | | |||||||||||||||   || |||||||||||||||||| || |||||||||||||    
T  29961095 gactattatttttcccaccctgctgccttctcgcgcaccatgcgaaatttactaaaatacccctagtccggattacataatccggaccagattgttagtg 29961194  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| |||||| ||||||||||| ||||||||||||  |||| | ||||||||||||||||||||||||||||    
T  29961195 atttccggaaacagaaatctggaccagatgttatgtgtttttctttgtctttctttgatgtcaagggtctctg 29961267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 44496187 - 44496356
Alignment:
Q  89 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 188  Q
    |||||||||||| |   |||||||| ||||||| |||| ||||||||| |||||||   |||||||| ||||  |||||| || ||||||||||||||||    
T  44496187 tattacttttcccactatgctgccttctcgcgcgccctgcaaaatttattaaaataaccctggtccgaattatgtaatccggaccagattgttagtgatt 44496286  T
Q  189 ttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    | |||||| |||||||  || |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  44496287 tccggaaacagaaatccagaccagatgttatgtaattttatgtgtctttctttgttgtcaagggtctctg 44496356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 258
Target Start/End: Complemental strand, 48965311 - 48965159
Alignment:
Q  106 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 205  Q
    |||||||| || |||| ||||  ||||||||||||||||   ||| | ||||||||||||||| || |||||||||||||||||  ||||| |||||||     
T  48965311 tgctgccttcttgcgcgccctgtaaaatttactaaaataccactgattcggattacataatccggaccagattgttagtgatttctggaaacagaaatcc 48965212  T
Q  206 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  48965211 ggaccagatattatgtaattttctgtgtctttctttgatgtcaaaggtctctg 48965159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 49851417 - 49851584
Alignment:
Q  91 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 190  Q
    |||||||||| | | |||||||| ||||||| |||| |||||||| | ||||||   |||||||| |||| ||||| | || ||||||||||||||| |     
T  49851417 ttacttttcccaccctgctgccttctcgcgcgcccttcaaaatttccaaaaataccgctggtccgaattatataattcggatcagattgttagtgatatc 49851516  T
Q  191 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||  ||| ||||||||||||  |||||||||||||||||| |||||||||| |||||    
T  49851517 cggaaaaagaaattcggaccagatgttatgtgcttttttgtgtctttctttaatgtcaagggcctctg 49851584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 33801125 - 33801232
Alignment:
Q  151 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 250  Q
    |||||||||  ||||||| || ||||||||||||||||| |||||| ||||||  ||| ||||| |||||||||||| ||||||||||||||||||||||    
T  33801125 gtccggattgtataatccggatcagattgttagtgatttccggaaacagaaattcggaccagatattatgtaattttctgtgtctttctttgatgtcaag 33801224  T
Q  251 ggtctctg 258  Q
    ||||||||    
T  33801225 ggtctctg 33801232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 41723292 - 41723398
Alignment:
Q  151 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 250  Q
    |||||||||  ||||||| || |||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||    
T  41723292 gtccggattgtataatccggatcagattgttagtgatttttggaaacagaaatctggaccagatgttatttaattttttgtgtcttt-ttttatgtcaag 41723390  T
Q  251 ggtctctg 258  Q
    ||||||||    
T  41723391 ggtctctg 41723398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 251
Target Start/End: Complemental strand, 46597573 - 46597408
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||| ||||||| ||||   ||||||| |||||||||||| ||||||||| |||||||    || | ||||||||||||||  || ||| ||||||||    
T  46597573 agactagtactttttctattcggctgccttctcgcgcaccctgcaaaatttattaaaatacccttgattcggattacataatcg-gatcaggttgttagt 46597475  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagg 251  Q
    ||||| || ||| | ||||| | |||||||||||||||||||| ||||||||| |||||||||||||    
T  46597474 gatttccgaaaacataaatccgaatcagatgttatgtaattttctgtgtctttatttgatgtcaagg 46597408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 38860449 - 38860552
Alignment:
Q  154 cggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggt 253  Q
    ||||||| ||||||| || | ||||||||||| ||| ||||||| |||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||    
T  38860449 cggattatataatccggacccgattgttagtg-tttccggaaaacgaaatccggaccagatgttatgtgattttttgtgtctttcttagatgtcaagggt 38860547  T
Q  254 ctctg 258  Q
    |||||    
T  38860548 ctctg 38860552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 258
Target Start/End: Complemental strand, 52632761 - 52632619
Alignment:
Q  116 tcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatg 215  Q
    |||||| |||| |||||||| | ||||||   ||||||| ||||| ||||||| || ||||||||||||||||| |||||||  ||||  ||| |||||     
T  52632761 tcgcgcgccctgcaaaattttcaaaaatacccctggtccagattatataatccggatcagattgttagtgatttccggaaaattaaattcggaccagata 52632662  T
Q  216 ttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||   ||||| |||||||||||||||||||||||||||||    
T  52632661 ttatgcgctttttggtgtctttctttgatgtcaagggtctctg 52632619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 255
Target Start/End: Complemental strand, 44757969 - 44757802
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 186  Q
    |||||||||||||| | | |||||||| ||||||| |||| ||||| || |  |||||   || || | |||||| ||||||  | |||||||||||||     
T  44757969 actattacttttcccaccatgctgccttctcgcgcgccctgcaaaaatttcataaatacccctagttcagattacgtaatccgaaccagattgttagtg- 44757871  T
Q  187 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    ||| |||||| ||||||| ||  |||||||||||||||||| ||||| |||||||||||||||||||||    
T  44757870 tttccggaaacagaaatccgggccagatgttatgtaattttctgtgtatttctttgatgtcaagggtct 44757802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 23984400 - 23984298
Alignment:
Q  156 gattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    ||||| |||||||||| ||||||||||||||| |  |||||| || ||| ||| ||||||||||||  ||||||||||||||||||||||||||  ||||    
T  23984400 gattatataatccagaccagattgttagtgatgtcaggaaaacgatatccggaccagatgttatgtgtttttttgtgtctttctttgatgtcaatagtct 23984301  T
Q  256 ctg 258  Q
    |||    
T  23984300 ctg 23984298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 258
Target Start/End: Complemental strand, 50262337 - 50262189
Alignment:
Q  109 tgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgga 208  Q
    ||||| ||| ||| |||| |||||||| | ||||||   || ||| |||||| ||||| | || | ||||||||||| ||| || |||| |||||| |||    
T  50262337 tgccttctcacgcgccctgcaaaatttccaaaaatacccctagtctggattatataattcggatccgattgttagtg-tttccgaaaaacgaaatccgga 50262239  T
Q  209 tcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
     |||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  50262238 ccagatgttatgtgattttttgtgtctttctttgatgtcaagggtttctg 50262189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 258
Target Start/End: Complemental strand, 11952815 - 11952683
Alignment:
Q  123 ccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgta 222  Q
    |||| |||||||| | |||||||   ||||||||||   ||||||| ||  |||||||||||||||| |||||||  ||||| ||| ||||||||||||     
T  11952815 ccctgcaaaatttccaaaaatatccatggtccggat---ataatccggacaagattgttagtgatttgcggaaaattaaatccggaccagatgttatgtg 11952719  T
Q  223 attttttgtgtctttctttgatgtcaagggtctctg 258  Q
     |||||||| ||||||||| ||||||| ||||||||    
T  11952718 tttttttgtatctttcttttatgtcaatggtctctg 11952683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 12528174 - 12528321
Alignment:
Q  110 gcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggat 209  Q
    |||| ||||||| |||| |||||||| | ||||||   || ||||||||||||||| || || |||||||||||||| || | ||||| ||||||||||     
T  12528174 gccttctcgcgcgccctgcaaaattttcaaaaatacccctcgtccggattacataacccggatcagattgttagtga-ttccagaaaacgaaatctggac 12528272  T
Q  210 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
     |||| ||||||  |||| || || ||||||||||||||||| ||||||    
T  12528273 tagatattatgtgcttttctgagtttttctttgatgtcaaggatctctg 12528321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 27216506 - 27216674
Alignment:
Q  91 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 190  Q
    |||||||||| | ||| |||| | ||||||| |||| ||||| || | ||||||| |||| |||||  || ||||||  ||  | ||||||| ||||||     
T  27216506 ttacttttcccaccttactgctttctcgcgcgccctgcaaaaatttcaaaaatatctctgatccgggctatataatcaggacaatattgttattgatttc 27216605  T
Q  191 cggaaaaagaaatctggatcagat-gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||| |||||  ||| || || |||||||  ||||| |||||||||||||||||||||||||||||    
T  27216606 cggaaaacgaaattcggaccatattgttatgtgctttttagtgtctttctttgatgtcaagggtctctg 27216674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 18272110 - 18272142
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  18272110 ttttgtgtctttctttgatgtcaagggtctctg 18272142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 18276764 - 18276796
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  18276764 ttttgtgtctttctttgatgtcaagggtctctg 18276796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 41086119 - 41086176
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaata 144  Q
    |||||||||||||||||| |||||||| ||||||| | || |||||||| | ||||||    
T  41086119 actattacttttcctatcctgctgccttctcgcgcgctctgcaaaatttccaaaaata 41086176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 41086191 - 41086275
Alignment:
Q  173 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||| | ||||||| |||||  ||| |||||||||||    ||||||||| |||| ||||||| |||||||||||    
T  41086191 cagattgttagtgatatccggaaaacgaaattcggaccagatgttatg-cgctttttgtgtttttcattgatgtgaagggtctctg 41086275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 41090887 - 41090944
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaata 144  Q
    |||||||||||||||||| |||||||| ||||||| | || |||||||| | ||||||    
T  41090887 actattacttttcctatcctgctgccttctcgcgcgctctgcaaaatttccaaaaata 41090944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 41090959 - 41091043
Alignment:
Q  173 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||| | ||||||| |||||  ||| |||||||||||    ||||||||| |||| ||||||| |||||||||||    
T  41090959 cagattgttagtgatatccggaaaacgaaattcggaccagatgttatg-cgctttttgtgtttttcattgatgtgaagggtctctg 41091043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 5750087 - 5750055
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||| |||||||||||    
T  5750087 ttttgtgtctttctttgatgtaaagggtctctg 5750055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 7199770 - 7199738
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||| ||||||||    
T  7199770 ttttgtgtctttctttgatgtcaatggtctctg 7199738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 10313383 - 10313351
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||| |||||||||||    
T  10313383 ttttgtgtctttctttgatgttaagggtctctg 10313351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 258
Target Start/End: Complemental strand, 12525195 - 12525167
Alignment:
Q  230 gtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||    
T  12525195 gtgtctttctttgatgtcaagggtctctg 12525167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 22335195 - 22335163
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| ||||||||||||||||||||||||||||    
T  22335195 ttttctgtctttctttgatgtcaagggtctctg 22335163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 87 - 258
Target Start/End: Complemental strand, 8240426 - 8240255
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 186  Q
    |||||||||||| | | | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |    
T  8240426 actattactttttccaccctgctgcctcctcgcgcgccctacaaaatttactaaaatatttctggtccggattacataatccggaccggattgttagtta 8240327  T
Q  187 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| | |||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8240326 tttcctgaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttaatgtcaagggtctctg 8240255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 85 - 253
Target Start/End: Complemental strand, 40105689 - 40105521
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||| | | | |||||||||||||||| |||| ||||||||| |||||||   ||||||||||||||||||| | || ||||||||||||    
T  40105689 agactattactttttccaccctgctgcctcctcgcgcgccctgcaaaatttattaaaatacccctggtccggattacataattcggaccagattgttagt 40105590  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggt 253  Q
     |||| || ||| ||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  40105589 tatttccgcaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggt 40105521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 6346999 - 6347171
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||| ||| | |||||||| ||||||| |||| |||||||||||||||||   ||||||||||||||||||||| || || ||||||||||    
T  6346999 gactattactttttctaccctgctgccttctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggagcaaattgttagtg 6347098  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    || | || |||| |||||  ||| |||||||||||   |||||||||||||||||||||||||||||| ||||    
T  6347099 atatccgaaaaacgaaattcggaccagatgttatgcgtttttttgtgtctttctttgatgtcaagggtttctg 6347171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 258
Target Start/End: Complemental strand, 35684463 - 35684283
Alignment:
Q  80 ttaagagactattacttttcctatctt---gctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacaga 176  Q
    |||| |||||||||||||||| ||| |   | |||||||||  ||  ||| ||||||||||||||||||  |||||| |||||||||||||| || ||||    
T  35684463 ttaatagactattacttttcccatcatcaggttgcctcctcctgcgtcctgcaaaatttactaaaatatccctggtctggattacataatccggatcaga 35684364  T
Q  177 ttgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||| |||||||||| | ||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||    
T  35684363 ttgttagtg-ttttcggaaacataaatctggaacaaatgttatgtaattttttgtgtttttctttgatgttaagggtctctg 35684283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 43098979 - 43098807
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||||||| |||||||||||| |||||||| | ||||||   | ||| ||||||| |||||||||| ||||||||||||    
T  43098979 agactattacttttcccaccctgctgccttctcgcgcacccttcaaaatttccaaaaatacccccggttcggattatataatccagaccagattgttagt 43098880  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    || |||| |||||  ||||||||| ||||||||||||  ||||||||||||||||||||||||||  |||||||    
T  43098879 ga-tttccgaaaattaaatctggaccagatgttatgtgcttttttgtgtctttctttgatgtcaacagtctctg 43098807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 20091264 - 20091437
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||  | | |||||||| ||||||| |||| |||||||| | ||||||   |||||| ||||||| |||||| || ||||||||||||    
T  20091264 agactattacttttcacaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtctggattacgtaatccggaccagattgttagt 20091363  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||| |||||||  ||||| ||| |||||||||||   |||||||||||||||||||||||||| ||||||||    
T  20091364 gatttccggaaaattaaatccggaccagatgttatgggtttttttgtgtctttctttgatgtcaatggtctctg 20091437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 32946776 - 32946949
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||| | | | |||||||||||| ||| | || |||||||||||||||||   |||  |||||||||||||||| || |||||||||||||    
T  32946776 gactattactttttccaccctgctgcctcctc-cgcgctctgcaaaatttactaaaatacccctgacccggattacataatccggatcagattgttagtg 32946874  T
Q  186 attttcggaaaaagaaa--tctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| |||||| |||||  || ||| |||||||||||||||||| ||||||||||||| || |||||||||||||    
T  32946875 atttccggaaacagaaaaatccggaccagatgttatgtaattttctgtgtctttctttaatctcaagggtctctg 32946949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 23144478 - 23144370
Alignment:
Q  149 tggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtca 248  Q
    |||||||||||| ||||||| || ||||||||||||| |||||| |||| |||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  23144478 tggtccggattatataatccggaccagattgttagtg-ttttcgaaaaacgaaatccggatcagatgttatgtgcttttttgtgtctttctttgatgtca 23144380  T
Q  249 agggtctctg 258  Q
    ||||||||||    
T  23144379 agggtctctg 23144370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 13546594 - 13546451
Alignment:
Q  115 ctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagat 214  Q
    ||||||| |||| |||||||| | ||||||   ||||| ||||||| ||||| |||| ||||||||||||||||| |||||||  ||||| ||| |||||    
T  13546594 ctcgcgcgccctgcaaaatttccaaaaatacccctggttcggattatataatacagaccagattgttagtgatttccggaaaattaaatccggaccagat 13546495  T
Q  215 gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  13546494 gttatgtggttttttgtgtctttctttgatgtcaagagtctctg 13546451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 13677879 - 13678022
Alignment:
Q  115 ctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagat 214  Q
    ||||||| |||| |||||||| | ||||||   ||||| ||||||| ||||| |||| ||||||||||||||||| |||||||  ||||| ||| |||||    
T  13677879 ctcgcgcgccctgcaaaatttccaaaaatacccctggttcggattatataatacagaccagattgttagtgatttccggaaaattaaatccggaccagat 13677978  T
Q  215 gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  13677979 gttatgtggttttttgtgtctttctttgatgtcaagagtctctg 13678022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 258
Target Start/End: Complemental strand, 39319034 - 39318863
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 186  Q
    |||||||||||||| |   || ||||| ||||||  | || ||||||||| |||||||   ||||||||||||||||||||   | |||||||||||| |    
T  39319034 actattacttttcccactctgatgccttctcgcgtgctctgcaaaatttattaaaatacccctggtccggattacataatctgaaccagattgttagtta 39318935  T
Q  187 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||| ||| ||||||| ||| |||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  39318934 ttttcgaaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatatcaagagtctctg 39318863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 29544103 - 29544274
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||||||| |||| || |||| |||||||| | ||||||   |||||||| |||| ||||||| || ||||||||||||    
T  29544103 agactattacttttcccaccctgctgccttctcgtgcgccctgcaaaatttccaaaaatacccctggtccgaattatataatccggaccagattgttagt 29544202  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |  |||| | |||  ||||| ||| ||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  29544203 g--tttccggaaactaaatccggaccagatgttatgtgcttttttgtgtgtttctttgatgtcaagggtctctg 29544274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 39260658 - 39260560
Alignment:
Q  159 tacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||| || ||||||||||||| ||| |||||| ||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  39260658 tacataatccggaccagattgttagtg-tttccggaaacagaaatccggaccagatgttatgtaattttctgtgtttttctttgatgtcaagggtctctg 39260560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 32337574 - 32337683
Alignment:
Q  149 tggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtca 248  Q
    |||| ||||||| ||||||  || ||||||||||| ||| | |||| ||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  32337574 tggttcggattatataatctggagcagattgttagcgatatccggacaaagaaatccggaccagatgttatgtgcttttttgtgtctttctttgatgtca 32337673  T
Q  249 agggtctctg 258  Q
    || |||||||    
T  32337674 agagtctctg 32337683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 586808 - 586676
Alignment:
Q  123 ccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgta 222  Q
    |||| |||||||| | ||||||  | ||||| | |||| |||||||  | ||||||||||||||| |   || ||||||||| ||| ||||||||||||     
T  586808 ccctgcaaaatttccaaaaatacctgtggtctgaattatataatccgaagcagattgttagtgatatctagacaaagaaatccggaccagatgttatgtg 586709  T
Q  223 attttttgtgtctttctttgatgtcaagggtct 255  Q
     ||||||||||||||||||||||||||||||||    
T  586708 tttttttgtgtctttctttgatgtcaagggtct 586676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 42132217 - 42132135
Alignment:
Q  174 agattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||| ||| |||||| ||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  42132217 agattgttagtg-tttccggaaacagaaatccgga-cagatgttatgtaattttttgtgtctaactttgatgtcaagggtctctg 42132135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 260
Target Start/End: Original strand, 627097 - 627252
Alignment:
Q  106 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 205  Q
    |||||| | ||||||  |||| |||||||| | |||||| || ||||| | |||| |||||||  | ||||||||||||||| |   || |||||||||     
T  627097 tgctgcattctcgcgtgccctgcaaaatttccaaaaatacttgtggtctgaattatataatccgaagcagattgttagtgatatctagacaaagaaatcc 627196  T
Q  206 ggatcagatgttatgtaatttt-ttgtgtctttctttgatgtcaagggtctctgct 260  Q
    ||| ||||||||||||  |||| |||||||||||||||||||||||||||| ||||    
T  627197 ggaccagatgttatgtgttttttttgtgtctttctttgatgtcaagggtctttgct 627252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 258
Target Start/End: Complemental strand, 4259005 - 4258974
Alignment:
Q  227 tttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||||||||||    
T  4259005 tttgtgtctttctttgatgtcaagggtctctg 4258974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 12020 - 11991
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtct 255  Q
    ||||||||||||||||||||||||||||||    
T  12020 ttttgtgtctttctttgatgtcaagggtct 11991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 37098099 - 37098199
Alignment:
Q  89 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 188  Q
    |||||||||||| | | || ||||| ||||||| |||| |||||||| | ||||||    ||||| |||||| ||||||| || ||||||||| ||||||    
T  37098099 tattacttttcccaccctgttgccttctcgcgcgccctgcaaaatttccaaaaatacccatggtctggattatataatccggaccagattgtttgtgatt 37098198  T
Q  189 t 189  Q
    |    
T  37098199 t 37098199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 46254564 - 46254733
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | |||||||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||| || |||||||||||||    
T  46254564 gactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggatcagattgttagtg 46254663  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    |||| |||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  46254664 atttccggaaacagaaatctggaccagatgttatgtaattttccgtgtctttctttgatgtcaagggtct 46254733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 36312520 - 36312349
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||  |||||| |||||||| |||||| || ||||||||||||    
T  36312520 agactattacttttcccaccctgctgcctcctcgcgcactctacaaaatttactaaaatacctctggttcggattacgtaatccggaccagattgttagt 36312421  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    | ||| || ||| ||||||| ||| |||||||||||||||||| | ||||||||||||||||||| ||||||||    
T  36312420 g-tttccgaaaacagaaatccgga-cagatgttatgtaattttctatgtctttctttgatgtcaaaggtctctg 36312349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 258
Target Start/End: Complemental strand, 34848314 - 34848142
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    |||||||| |||||| | | |||||||| |||||||| ||||||||||||| ||||||||  |||||||||||||||| || | || |||||||||||||    
T  34848314 gactattatttttcccaccctgctgccttctcgcgcatcctacaaaatttattaaaatatccctggtccggattacattattcggatcagattgttagtg 34848215  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| |||||| ||||||| ||| ||||  |||||||||||| | ||||||||||||||||||| ||||||||    
T  34848214 atttccggaaacagaaatccggaccagaatttatgtaattttctatgtctttctttgatgtcaatggtctctg 34848142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 258
Target Start/End: Original strand, 44862716 - 44862887
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 186  Q
    ||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||| |  ||||| |||||| |||||||  | || ||||||||| |    
T  44862716 actattatttttctcatcttgctgcctcctcgcgcaccctgcaaaatttactaaaatactcatggtctggattatataatccgtagcaaattgttagtta 44862815  T
Q  187 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| || ||| |||||||   | |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  44862816 tttccgaaaacagaaatccaaaccagatgttatgtaattttctgtgtctttctttgatgttaagggtctctg 44862887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 43269984 - 43270132
Alignment:
Q  110 gcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggat 209  Q
    |||| ||||||| |||| ||||||||| |||| |||  ||| ||||||||||||||||| || |||||||||||| |||  | |||  ||||||| |||     
T  43269984 gccttctcgcgcgccctgcaaaatttattaaagtatccctgatccggattacataatccggatcagattgttagtaattaccagaatcagaaatccggac 43270083  T
Q  210 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43270084 cagatgttatgtaattttttgtgtctttctttgatgtcaatggtctctg 43270132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 43457885 - 43458057
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||  | |||||||||| ||| ||| |||| |||||||| | |||||| | ||||||||||||| ||| |||  | |||||||||||||    
T  43457885 gactattacttttcacaccttgctgccttctcacgcgccctgcaaaattttcaaaaatactcctggtccggattatatattccgaaccagattgttagtg 43457984  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||| | |||||  ||| || || ||||||  |||||||||||||||||| ||||||||||||||||    
T  43457985 attttcggaatacgaaattcggaccaaatattatgtgcttttttgtgtctttctttcatgtcaagggtctctg 43458057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 35794180 - 35794347
Alignment:
Q  91 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 190  Q
    |||||||||| | | | |||||| ||||| |  ||| |||||||||||||||||   ||||| |||||||||||||||  | |||||||||||||||||     
T  35794180 ttacttttcccaccctactgccttctcgcacgacctgcaaaatttactaaaataaccctggttcggattacataatccgaaccagattgttagtgatttc 35794279  T
Q  191 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
     ||||| | ||||| |||  ||||||||||||||||| | ||||||||||||||||||||||||||||    
T  35794280 tggaaacaaaaatccggactagatgttatgtaattttctctgtctttctttgatgtcaagggtctctg 35794347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 33950693 - 33950799
Alignment:
Q  151 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 250  Q
    |||||||||  ||||||| || | ||||||||||||||| |||||| ||||||  ||| ||||| |||||||||||||||||||||||||| ||||||||    
T  33950693 gtccggattgtataatccggatcggattgttagtgatttccggaaacagaaattcggaccagatcttatgtaattttttgtgtctttcttttatgtcaag 33950792  T
Q  251 ggtctct 257  Q
    |||||||    
T  33950793 ggtctct 33950799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 25529456 - 25529372
Alignment:
Q  173 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 257  Q
    ||||||||||||||||| ||||| | |||||| ||| ||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  25529456 cagattgttagtgatttccggaatacgaaatccggaccagatattatgtgcttttttgtgtctttctttgatgtcaagggtctct 25529372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 14817016 - 14816914
Alignment:
Q  155 ggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 254  Q
    |||||| ||||||| || |||||| ||||||||||| ||||||  ||||  |||  |||||||||||  |||||| ||||||||||||||||||| ||||    
T  14817016 ggattatataatccggaccagattattagtgatttt-ggaaaattaaattcggacaagatgttatgtgcttttttttgtctttctttgatgtcaaaggtc 14816918  T
Q  255 tctg 258  Q
    ||||    
T  14816917 tctg 14816914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 15264012 - 15263910
Alignment:
Q  155 ggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 254  Q
    |||||| ||||||| || |||||| ||||||||||| ||||||  ||||  |||  |||||||||||  |||||| ||||||||||||||||||| ||||    
T  15264012 ggattatataatccggaccagattattagtgatttt-ggaaaattaaattcggacaagatgttatgtgcttttttttgtctttctttgatgtcaaaggtc 15263914  T
Q  255 tctg 258  Q
    ||||    
T  15263913 tctg 15263910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 15032835 - 15032803
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  15032835 ttttgtgtctttctttgatgtcaagggtctctg 15032803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 257
Target Start/End: Original strand, 26791837 - 26791868
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctct 257  Q
    ||||||||||||||||||||||||||||||||    
T  26791837 ttttgtgtctttctttgatgtcaagggtctct 26791868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 38257726 - 38257695
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctct 257  Q
    ||||||||||||||||||||||||||||||||    
T  38257726 ttttgtgtctttctttgatgtcaagggtctct 38257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 7255693 - 7255661
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||| ||||||||||||||||||||||||    
T  7255693 ttttgtgtatttctttgatgtcaagggtctctg 7255661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 29332574 - 29332542
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||| ||||||||||||||||    
T  29332574 ttttgtgtctttctttaatgtcaagggtctctg 29332542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 35585354 - 35585322
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||| ||||    
T  35585354 ttttgtgtctttctttgatgtcaagggtttctg 35585322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 37998511 - 37998543
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||| ||||||||    
T  37998511 ttttgtgtctttctttgatgtcaaaggtctctg 37998543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 10509662 - 10509489
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||| | | | |||||||| ||||||| || | ||||||||||||||||| | ||||||||||||||||||||| ||  |||||||||||    
T  10509662 agactattactttttccaccctgctgccttctcgcgccccttgcaaaatttactaaaatactcctggtccggattacataatccggattagattgttagt 10509563  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10509562 gattttcggaaacagacatctggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 10509489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 91 - 258
Target Start/End: Complemental strand, 41194151 - 41193984
Alignment:
Q  91 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 190  Q
    |||||||||| | | |||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||     
T  41194151 ttacttttcccaccctgctgccttctcgcgcgcccggcaaaatttactaaaatatttctggtccggattacataatccggaccagattgttagtgatttc 41194052  T
Q  191 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||| |||||| ||| ||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  41194051 cggaaaacgaaatcaggaccagatgttatgtgtttttatgtgtctttctttgatgtcaagggtctctg 41193984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 227328 - 227499
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    ||||| |||||||||| | | |||||||||||||||  || | ||||||||||||||||| | ||||||||||||||||||||| ||    |||||||||    
T  227328 agacttttacttttcccaccatgctgcctcctcgcgtgccttgcaaaatttactaaaatactcctggtccggattacataatccgga--ctattgttagt 227425  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||| || ||| ||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  227426 gatttgcgaaaacagaaatccggaccagatgttatgtaattttctgtgtttttctttgatgtcaagggtctctg 227499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 258
Target Start/End: Original strand, 39586272 - 39586443
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 186  Q
    |||||||||||||| | | |  ||||| ||||||| |||| |||||||| ||||||||   ||| |||||||||||||||||| |  |||||||||||||    
T  39586272 actattacttttcccaccctattgccttctcgcgcgccctgcaaaattttctaaaataaccctgatccggattacataatccatacaagattgttagtga 39586371  T
Q  187 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| || ||| ||||||| ||| ||||||||||||||||||   ||||||||||||||||||||||||||||    
T  39586372 tttccgaaaacagaaatccggaccagatgttatgtaattttccatgtctttctttgatgtcaagggtctctg 39586443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 53814648 - 53814796
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||||||| |||||||  ||| |||||||||||||||||   ||||||||| ||||||||| |||| ||||||||||||    
T  53814648 agactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaatttactaaaataaccctggtccgggttacataattcagaccagattgttagt 53814747  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgt 233  Q
    ||||| |||||| ||||||  ||| |||||||||||||||||| |||||    
T  53814748 gatttccggaaacagaaatgcggaccagatgttatgtaattttctgtgt 53814796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 40936914 - 40937087
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | | |||||| ||||||||||||  |||||||| |||||||   ||||| | |||||  ||||||  | ||||||||||||    
T  40936914 agactattacttttcccaccctactgccttctcgcgcaccctgtaaaatttattaaaataaccctggttcagattatgtaatccgaaccagattgttagt 40937013  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| | |||||| |||||| |||| |||||||||||||||||| |||||||||||||| | |||||||||||||    
T  40937014 gatatccggaaacagaaatatggaccagatgttatgtaattttctgtgtctttctttgctatcaagggtctctg 40937087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 149025 - 149197
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||| | | | |||||||| |||||||  |||  ||||||||||||||||    ||||| ||||||  |||||| || || ||||||||||    
T  149025 gactattactttttccaccctgctgccttctcgcgcgtcctgaaaaatttactaaaataaccatggtctggattatgtaatccggaccaaattgttagtg 149124  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
     ||| | |||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  149125 gtttccagaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttgctgtcaagggtctctg 149197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 109 - 249
Target Start/End: Complemental strand, 49166520 - 49166380
Alignment:
Q  109 tgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgga 208  Q
    ||||| ||||||| || | ||||||||||||||||||   |||||||||||||||||||  || ||||||||||||||||||  ||||| |||||| |||    
T  49166520 tgccttctcgcgcgccttgcaaaatttactaaaatatccatggtccggattacataatctggaccagattgttagtgatttttagaaaacgaaatccgga 49166421  T
Q  209 tcagatgttatgtaattttttgtgtctttctttgatgtcaa 249  Q
     ||||||||||||  |||| |||||||||||||||||||||    
T  49166420 ccagatgttatgtgtttttctgtgtctttctttgatgtcaa 49166380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 31765634 - 31765464
Alignment:
Q  89 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 188  Q
    |||||||||| | |||||||||||| ||||||| |||| |||||||| | |||||||  ||||||||||||| ||||| | || || |||||||||||||    
T  31765634 tattactttttccatcttgctgccttctcgcgcgccctgcaaaattttcaaaaatatccctggtccggattatataattcggaccaaattgttagtgatt 31765535  T
Q  189 ttcggaaaaagaaatctggatcaga-tgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |  |||||| |||||| ||| || | ||||||||  |||||||||  ||||||||||||||||||||||||    
T  31765534 tctggaaaatgaaatccggaccatattgttatgtgtttttttgtgcttttctttgatgtcaagggtctctg 31765464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 32529503 - 32529673
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgtta-gt 184  Q
    ||||||||||||| | | | |||||||| ||||||  ||||  ||||||||||||||||   ||||||||||||||||||| | || |||||||||| ||    
T  32529503 gactattactttttccaccctgctgccttctcgcgtgccctgtaaaatttactaaaatacccctggtccggattacataattcggaccagattgttaagt 32529602  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    ||||| |||||| ||||||  ||| |||||||||| |  |||| |||||||||||||||||||||||||||    
T  32529603 gatttccggaaacagaaattcggaccagatgttatatgcttttctgtgtctttctttgatgtcaagggtct 32529673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 41174565 - 41174689
Alignment:
Q  133 tttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtg 232  Q
    ||||||||||||   ||||||||||||||||||||| || ||||||||| ||||||| | ||| | | ||||  || |||||||||||||||||||||||    
T  41174565 tttactaaaatacccctggtccggattacataatccggatcagattgtttgtgatttccagaata-gtaatccagaccagatgttatgtaattttttgtg 41174663  T
Q  233 tctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||||    
T  41174664 tctttctttgatgtcaagggtctctg 41174689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 258
Target Start/End: Original strand, 39353023 - 39353175
Alignment:
Q  106 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 205  Q
    ||||||||  |||||| ||||  ||||||| | ||||||   ||||||||||||| ||||||| ||  ||||||||||||||||||| ||||  |||||     
T  39353023 tgctgccttatcgcgcgccctgtaaaattttcaaaaatacccctggtccggattatataatccggacaagattgttagtgattttcgaaaaattaaatcc 39353122  T
Q  206 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| ||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  39353123 ggaccagatgttatgttcttttttgtgtctttctttgatgtcaatggtctctg 39353175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 162 - 257
Target Start/End: Complemental strand, 26502555 - 26502460
Alignment:
Q  162 ataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 257  Q
    ||||||| || || ||||||| ||||||||||||| ||||||| |||  |||||||||||||||||  ||||||||||||||||||||| ||||||    
T  26502555 ataatccggatcaaattgttaatgattttcggaaacagaaatccggactagatgttatgtaattttccgtgtctttctttgatgtcaagtgtctct 26502460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 36403120 - 36403011
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||  | | |||||||||||||||| |||| |||||||||||||||||   ||| | ||||||| ||||||| || || |||||||||    
T  36403120 agactattacttttctcaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctgattcggattatataatccggatcaaattgttagt 36403021  T
Q  185 gattttcgga 194  Q
    ||||| ||||    
T  36403020 gatttccgga 36403011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 6936298 - 6936346
Alignment:
Q  210 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6936298 cagatgttatgtgattttttgtgtctttctttgatgtcaagggtctctg 6936346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 47646728 - 47646785
Alignment:
Q  201 aatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  47646728 aatccggaccagatgttatgtgattttctgtgtctttctttgatgtcaagggtctctg 47646785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 47014042 - 47013987
Alignment:
Q  199 gaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  47014042 gaaatctgga-cagatgttgtgtaattttttgcgtctttctttgatgtcaagggtct 47013987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 47646649 - 47646741
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagat 177  Q
    |||||||||||||||| | | |||||||| |||| ||||| | |||||||||||||||||   ||  ||||||||||||||||| || |||||    
T  47646649 agactattacttttcccaccatgctgccttctcgtgcaccgtgcaaaatttactaaaatacccctattccggattacataatccggaccagat 47646741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 3733820 - 3733787
Alignment:
Q  225 tttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||||||||||||    
T  3733820 tttttgtgtctttctttgatgtcaagggtctctg 3733787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 26982619 - 26982586
Alignment:
Q  225 tttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||||||||||||    
T  26982619 tttttgtgtctttctttgatgtcaagggtctctg 26982586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 9126872 - 9126904
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  9126872 ttttgtgtctttctttgatgtcaagggtctctg 9126904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 9134979 - 9135011
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  9134979 ttttgtgtctttctttgatgtcaagggtctctg 9135011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 21450454 - 21450422
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  21450454 ttttgtgtctttctttgatgtcaagggtctctg 21450422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 49327607 - 49327575
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  49327607 ttttgtgtctttctttgatgtcaagggtctctg 49327575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 49440561 - 49440529
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  49440561 ttttgtgtctttctttgatgtcaagggtctctg 49440529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 53393788 - 53393820
Alignment:
Q  225 tttttgtgtctttctttgatgtcaagggtctct 257  Q
    |||||||||||||||||||||||||||||||||    
T  53393788 tttttgtgtctttctttgatgtcaagggtctct 53393820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 8486800 - 8486770
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctc 256  Q
    |||||||||||||||||||||||||||||||    
T  8486800 ttttgtgtctttctttgatgtcaagggtctc 8486770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 21450592 - 21450494
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    |||||||||||| | | | || ||||| ||||||| || | ||||| || |  |||||| ||||||||||||||| ||||||| | |||||||||||||    
T  21450592 actattactttttccaccctgttgccttctcgcgcgccttgcaaaaattccataaatatatctggtccggattacgtaatccataccagattgttagtg 21450494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 49440699 - 49440601
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    |||||||||||| | | | || ||||| ||||||| |||| ||||| || |  |||||  ||||||||||||||| |||||| || |||||||||||||    
T  49440699 actattactttttccaccctgttgccttctcgcgcgccctgcaaaaatttcataaatacctctggtccggattacgtaatccggaccagattgttagtg 49440601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 36403006 - 36402977
Alignment:
Q  229 tgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||||||||    
T  36403006 tgtgtctttctttgatgtcaagggtctctg 36402977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 47375168 - 47375059
Alignment:
Q  76 ataattaagagactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacag 175  Q
    |||||||| |||||||||||||||| | | || ||||| ||||||| |||| ||||| || |  |||||   |||||||| ||||| |||||| || |||    
T  47375168 ataattaatagactattacttttcccaccctgatgccttctcgcgcgcccttcaaaaatttcataaatacacctggtccgaattacgtaatccggaccag 47375069  T
Q  176 attgttagtg 185  Q
    ||||| ||||    
T  47375068 attgtaagtg 47375059  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 258
Target Start/End: Original strand, 2182926 - 2182954
Alignment:
Q  230 gtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||    
T  2182926 gtgtctttctttgatgtcaagggtctctg 2182954  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 33186646 - 33186678
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||| |||||||||||||    
T  33186646 ttttgtgtctttctttgatatcaagggtctctg 33186678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 12723368 - 12723540
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||||||||||||||| |||| |||||||||||||||||   ||||| ||||||||||||||| || ||||||||||||    
T  12723368 agactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggttcggattacataatccggatcagattgttagt 12723467  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 257  Q
    ||||| || ||| ||||||| | | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  12723468 gatttccgaaaacagaaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctct 12723540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 86 - 258
Target Start/End: Complemental strand, 16514033 - 16513861
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | |||||||| ||||||| |||| |||||||| | ||||||  | || ||||||||||||||||| || |||||||||||||    
T  16514033 gactattacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacctttgatccggattacataatccggatcagattgttagtg 16513934  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||| ||| ||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  16513933 attttcgaaaacagaaatccggaccatatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 16513861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 12784851 - 12785024
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | ||||||||||||||||||||| ||  |||||||||||||   ||||| ||||||||||||||| || | ||| ||||||    
T  12784851 agactattacttttcccaccctgctgcctcctcgcgcaccctgcaccatttactaaaatacccctggttcggattacataatccggatcggatggttagt 12784950  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||| || ||| ||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12784951 gatttccgaaaacagaaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 12785024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 18808677 - 18808849
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | |||||||||||| ||| |||| |||||||||||||||||    |||||| ||||||||||||| || |||||||||||||    
T  18808677 gactattacttttcccaccatgctgcctcctcacgcgccctgcaaaatttactaaaatacccttggtccagattacataatccggatcagattgttagtg 18808776  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||  ||||| ||||||  ||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  18808777 atttctggaaatagaaattcggaccagatgttatgtaatttcctgtgtctttctttgatgtcaagggtctctg 18808849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 8734420 - 8734564
Alignment:
Q  115 ctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagat 214  Q
    |||||||| |||  |||||||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||||| ||||| ||||||  |||||||||    
T  8734420 ctcgcgcatcctgtaaaatttactaaaatattcctggtccggattacataatccggattagattgttagtgatttttggaaacagaaattcggatcagat 8734519  T
Q  215 gttatgtaa-ttttttgtgtctttctttgatgtcaagggtctctg 258  Q
     |||||||| |||||||||||||||||||||||||||| ||||||    
T  8734520 attatgtaatttttttgtgtctttctttgatgtcaaggatctctg 8734564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 85 - 255
Target Start/End: Complemental strand, 13822512 - 13822343
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||   |||||||||||||| |||||| ||  |||| ||||||    
T  13822512 agactattacttttcccaccttgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacgtaatccggactagatagttagt 13822413  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    | |||||  ||| | |||||  || ||||||||||||||||||  ||||||||||||||||  ||||||||    
T  13822412 g-ttttcaaaaacaaaaatccagaccagatgttatgtaattttcggtgtctttctttgatgcaaagggtct 13822343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 37030689 - 37030516
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||| | | | |||||||| ||||||   ||| |||||||| | ||| ||   ||||||||||||| ||||||| || ||||||||||||    
T  37030689 agactattactttttccaccatgctgccttctcgcgtgtcctgcaaaatttccaaaagtacccctggtccggattatataatccggaccagattgttagt 37030590  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| | |||||||  ||||| ||| |||||||||||   |||||||||||||||||||||||||||||||||||    
T  37030589 gatatccggaaaacaaaatccggaccagatgttatgcgcttttttgtgtctttctttgatgtcaagggtctctg 37030516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 8197105 - 8197277
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | |  ||||||| ||||| | | || |||||||||||||||||  ||||||  |||||||||||||| || ||||||||||||    
T  8197105 agactattacttttcccaccccgctgccttctcgcacgctctgcaaaatttactaaaatacctctggtttggattacataatccggaccagattgttagt 8197204  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 257  Q
    ||||| |||||| |  | || |||  ||||||   |||||||||||||||||||||||||||||| |||||||    
T  8197205 gatttccggaaacatgattccggaaaagatgtatagtaattttttgtgtctttctttgatgtcaatggtctct 8197277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 8301137 - 8301033
Alignment:
Q  151 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 250  Q
    |||||||||| ||||||| || ||||||||||||||||| || ||| ||||||| | | |||||||||||||||||| ||||||||||||||||||||||    
T  8301137 gtccggattatataatccggatcagattgttagtgatttccgaaaacagaaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaag 8301038  T
Q  251 ggtct 255  Q
    |||||    
T  8301037 ggtct 8301033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 25977541 - 25977393
Alignment:
Q  110 gcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggat 209  Q
    |||| ||||||| ||||  ||||||||| ||||||   |||||  |||||| |||||||  | |||||||||||||||   ||||||| |||||| ||||    
T  25977541 gccttctcgcgcgccctgtaaaatttacaaaaatacccctggtttggattatataatccgtagcagattgttagtgatacccggaaaacgaaatcaggat 25977442  T
Q  210 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  25977441 cagatgttatgtggttttttgtgtctttctttgatgtcaagggtctctg 25977393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 26278744 - 26278910
Alignment:
Q  91 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 190  Q
    |||||||||||| | || | ||| ||||||| ||||  ||||||| ||||||||   ||||||||||||| ||||||| || ||||||||||||||| |     
T  26278744 ttacttttcctaccctgtttccttctcgcgcgccctgtaaaattt-ctaaaatacccctggtccggattatataatccggaccagattgttagtgatatc 26278842  T
Q  191 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||| |||||  ||| ||||||||||||  |||||||||||||| |||||||||||| |||||||    
T  26278843 cggaaaacgaaattcggaccagatgttatgtgtttttttgtgtctttttttgatgtcaagtgtctctg 26278910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 15858581 - 15858731
Alignment:
Q  82 aagagactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgtt 181  Q
    ||||||||||||||||||| | | ||||| | |||||| |||||  ||||||||| |||||||  |||||||||||||||| ||||| ||  ||||||||    
T  15858581 aagagactattacttttcccaccctgctgtcccctcgcacacccagcaaaatttattaaaatacatctggtccggattacacaatccggattagattgtt 15858680  T
Q  182 agtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtg 232  Q
    |||||||| || ||| ||||||  | | |||||||||||||||||| ||||    
T  15858681 agtgatttccgaaaacagaaattcgaaccagatgttatgtaattttctgtg 15858731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 3556361 - 3556490
Alignment:
Q  128 caaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaatttt 227  Q
    |||||||||||||||||   ||||| |||||||| || ||  || |||||||||||| ||||||| ||| |||||||  || |||||||||||||| |||    
T  3556361 caaaatttactaaaatacccctggttcggattacttattctggaccagattgttagttattttcgaaaacagaaatccagaccagatgttatgtaacttt 3556460  T
Q  228 ttgtgtctttctttgatgtcaagggtctct 257  Q
     ||||||||||||||||||||| |||||||    
T  3556461 atgtgtctttctttgatgtcaaaggtctct 3556490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 27114089 - 27114174
Alignment:
Q  173 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||| | ||||||  |||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  27114089 cagattgttagtgattttcggaatacgaaatccagatcagatattatgtgtttttttgtgtctttctttgatgtcaagggtctctg 27114174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 2606419 - 2606249
Alignment:
Q  89 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 188  Q
    |||||||||||| | |||  ||||| ||||||| || | |||||||| | ||||||   |||||||| |||| ||||||  |  | ||||||||||||||    
T  2606419 tattacttttcccaccttaatgccttctcgcgcgccttccaaaatttccaaaaatacccctggtccgaattatataatctggtccggattgttagtgatt 2606320  T
Q  189 ttc-ggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| |||| |  |||||||||  |||||||||||  |||||||||||||||||||||||||| ||||||||    
T  2606319 ttccggaacattaaatctggacaagatgttatgtgcttttttgtgtctttctttgatgtcaatggtctctg 2606249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 38679802 - 38679724
Alignment:
Q  176 attgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 254  Q
    |||||| ||||||| |||||| |  |||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38679802 attgtttgtgatttccggaaacaacaatccggaccagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 38679724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 13654679 - 13654782
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| ||| |||||||| |||| ||||  |  ||||||||||||||||   |||||| |||||| |||||||| | ||||||||||||    
T  13654679 agactattacttttcccatcctgctgccttctcgtgcactatgtaaaatttactaaaatacccctggtctggattatataatccatatcagattgttagt 13654778  T
Q  185 gatt 188  Q
    ||||    
T  13654779 gatt 13654782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 256
Target Start/End: Original strand, 37883148 - 37883298
Alignment:
Q  109 tgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaa---gaaatct 205  Q
    ||||| ||||||| |||| |||||||| | ||||||    |||||||||||| ||||| | || |||||||||||||||||  | |||||    |||||     
T  37883148 tgccttctcgcgcgccctgcaaaattttcaaaaataaccatggtccggattatataatgcggaccagattgttagtgatttctgaaaaaaaattaaatcc 37883247  T
Q  206 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctc 256  Q
    ||| |||||| |||||  |||||||||| ||||||||||||||| ||||||    
T  37883248 ggaccagatggtatgtgcttttttgtgtatttctttgatgtcaaaggtctc 37883298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 11720284 - 11720202
Alignment:
Q  173 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||| ||| |||||||  |||| |||||||||||||||||  ||||||||  ||||||||||||||||| |||||||    
T  11720284 cagattgttagtgcttt-cggaaaacaaaatttggatcagatgttatgtgtttttttgt--ctttctttgatgtcaagagtctctg 11720202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 37012642 - 37012699
Alignment:
Q  201 aatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| ||| ||||||||||||| |||| |||||||||||||||| |||| ||||||||    
T  37012642 aatccggaccagatgttatgtacttttctgtgtctttctttgatttcaaaggtctctg 37012699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 1711510 - 1711478
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  1711510 ttttgtgtctttctttgatgtcaagggtctctg 1711478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 5344033 - 5344001
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  5344033 ttttgtgtctttctttgatgtcaagggtctctg 5344001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 32746682 - 32746714
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  32746682 ttttgtgtctttctttgatgtcaagggtctctg 32746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 37012563 - 37012655
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagat 177  Q
    ||||||||| |||||  | ||||||||||  |||||| |||| ||||||||| |||||||   |||||||||||| |||||||| || |||||    
T  37012563 agactattatttttctcaccttgctgccttttcgcgcgccctgcaaaatttattaaaatacccctggtccggattgcataatccggaccagat 37012655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 5344172 - 5344073
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | || ||||| ||||||| |||| ||||| || |  |||||   |||||||||||||| |||||| || |||||||||||||    
T  5344172 gactattacttttcccaccatgttgccttctcgcgcgccctgcaaaaattccataaatacccctggtccggattacgtaatccggaccagattgttagtg 5344073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 9715609 - 9715575
Alignment:
Q  224 ttttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||| |||||||||||||||||||||||||||    
T  9715609 ttttttgcgtctttctttgatgtcaagggtctctg 9715575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 9715670 - 9715624
Alignment:
Q  148 ctggtccggattacataatccagaacagattgttagtgattttcgga 194  Q
    |||||||| |||| |||||||||| ||||||||||||||||| ||||    
T  9715670 ctggtccgaattatataatccagaccagattgttagtgatttccgga 9715624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 27948429 - 27948462
Alignment:
Q  225 tttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||| ||||||||    
T  27948429 tttttgtgtctttctttgatgtcaaaggtctctg 27948462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 6432703 - 6432671
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||| |||||||||||||||||    
T  6432703 ttttgtgtctttcttcgatgtcaagggtctctg 6432671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 38984204 - 38984236
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||| |||||||    
T  38984204 ttttgtgtctttctttgatgtcaagagtctctg 38984236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 85 - 256
Target Start/End: Original strand, 35158415 - 35158587
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||||||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||| || ||||||||||||    
T  35158415 agactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggaccagattgttagt 35158514  T
Q  185 gattttcggaaaaag-aaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctc 256  Q
     |||| |||||| || ||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  35158515 tatttccggaaacagaaaattcggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctc 35158587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 87 - 258
Target Start/End: Complemental strand, 28781209 - 28781038
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 186  Q
    |||||||||||||  | | ||||||||||||| ||||||| |||||||||||||||||   ||||||||||||||  ||||| || ||||||||||||||    
T  28781209 actattacttttctcaccatgctgcctcctcgtgcaccctgcaaaatttactaaaatacccctggtccggattacgcaatccggaccagattgttagtga 28781110  T
Q  187 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||  ||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28781109 tttctggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 28781038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 52417373 - 52417201
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||||| | |||||||| ||||||  |||| |||||||||||||||||   |||||||||||||| |||||| || ||||||||||||    
T  52417373 agactattacttttcctaccctgctgccttctcgcgtgccctgcaaaatttactaaaatacccctggtccggattacgtaatccggaccagattgttagt 52417274  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    | ||| |||||| ||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  52417273 g-tttccggaaacagaaatccggaccatatgttatgtaattttttatgtctttctttgatgtcaagggtctctg 52417201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 45029461 - 45029288
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||| | | | |||||||| ||| |||||||| |||||||||||||||||   || |||||||||||||||| | || ||||||||||||    
T  45029461 agactattactttttccaccctgctgccttctcccgcaccctgcaaaatttactaaaatacccctagtccggattacataattcggatcagattgttagt 45029362  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||| || ||| ||||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45029361 gatttccgaaaacagaaattcggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 45029288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 9036516 - 9036367
Alignment:
Q  108 ctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgg 207  Q
    |||||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||| || ||||||||| ||||||| ||| || ||||||||||    
T  9036516 ctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggatcagattgttcgtgatttccgg-aacagaaatctgg 9036418  T
Q  208 atcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    | |||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  9036417 accagatgttatgtaattttctgtgtctttctttgatgttaagggcctctg 9036367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 30003332 - 30003481
Alignment:
Q  109 tgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgga 208  Q
    ||||||||||||| |||  || |||||| |||||||| |||||||||||||| ||||||| || |||||||||||| ||||  ||||| ||||||| |||    
T  30003332 tgcctcctcgcgcgcccggcataatttattaaaatatctctggtccggattatataatccggaccagattgttagttatttctggaaacagaaatccgga 30003431  T
Q  209 tcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30003432 ccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 30003481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 1602490 - 1602656
Alignment:
Q  89 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 188  Q
    |||||||||| | | | |||||||||||||| | |||||||||||||||||||||||  |||||||||||||   ||||| || ||||||||||||||||    
T  1602490 tattactttttccaacctgctgcctcctcgcacgccctacaaaatttactaaaatatccctggtccggatta---aatccggaccagattgttagtgatt 1602586  T
Q  189 ttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |  ||||| ||||||  |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  1602587 tctggaaacagaaattcggatcagatgttatgtaactttctgtgtatttctttgatgtcaagggtctctg 1602656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 43842288 - 43842145
Alignment:
Q  115 ctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagat 214  Q
    ||||| |||||| |||||||||||||||||    |||||  ||||||||||||| || |||||||||||||||||||||||| ||||||| ||  |||||    
T  43842288 ctcgcacaccctgcaaaatttactaaaatacccttggtctagattacataatccggatcagattgttagtgattttcggaaacagaaatccggcccagat 43842189  T
Q  215 gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  43842188 gttatgtaattttctgtgtctttctttgatgtcaagggtctctg 43842145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 85 - 256
Target Start/End: Original strand, 45228787 - 45228958
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||| | | | ||||| || ||||||| |||| |||||||||||||||||    || ||  ||||||||||||| || ||||||||||||    
T  45228787 agactattactttttccaccctgctgtcttctcgcgcgccctgcaaaatttactaaaatacccttgatcatgattacataatccggaccagattgttagt 45228886  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctc 256  Q
    |||||||||||| | ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  45228887 gattttcggaaacaaaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctc 45228958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 55136364 - 55136533
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||| | | | |||||||||||  |||||||| |||||||||||||||||   ||| | ||||||||||||||| || |||||||||||||    
T  55136364 gactattactttttccaccctgctgcctcctttcgcaccctgcaaaatttactaaaatacccctgattcggattacataatccggatcagattgttagtg 55136463  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    ||||||||||| ||||||| |||  | ||||||||||||||  |||||||| ||||||||||||||||||    
T  55136464 attttcggaaacagaaatccggacaaaatgttatgtaatttgatgtgtcttcctttgatgtcaagggtct 55136533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 91 - 255
Target Start/End: Complemental strand, 38551697 - 38551533
Alignment:
Q  91 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 190  Q
    |||||||||| | | |||||||| ||||||| |||| |||||||| | ||||||   ||||||||||||| ||||||| || ||||||||||||||||||    
T  38551697 ttacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagtgatttt 38551598  T
Q  191 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 255  Q
    ||||||| |||||  ||| ||||||||||||  ||||||||||||||| ||||||||||||||||    
T  38551597 cggaaaacgaaatacggaccagatgttatgtgcttttttgtgtctttccttgatgtcaagggtct 38551533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 51538346 - 51538515
Alignment:
Q  89 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 188  Q
    ||||| |||||| | | |||||||| |||||   |||| |||||||||| | ||||   ||||||||||||||||||| | ||  |||||||||||||||    
T  51538346 tattatttttcccaccctgctgccttctcgcatgccctgcaaaatttacgacaataaccctggtccggattacataattcggactagattgttagtgatt 51538445  T
Q  189 ttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    | |||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51538446 tccggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 51538515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 106 - 258
Target Start/End: Original strand, 40727743 - 40727895
Alignment:
Q  106 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 205  Q
    ||||||||||||||  ||||| |||||||||||||||||   ||||||||||||| | ||||  || |||||||||||||||||||||||| |||||||     
T  40727743 tgctgcctcctcgcataccctgcaaaatttactaaaatacccctggtccggattatacaatctggaccagattgttagtgattttcggaaacagaaatcc 40727842  T
Q  206 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
     || |||||||||||| ||||| ||||||||||||||||||||| | ||||||    
T  40727843 agaccagatgttatgttattttctgtgtctttctttgatgtcaatgatctctg 40727895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 15543272 - 15543103
Alignment:
Q  89 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 188  Q
    |||||||||||| | |||||||||| ||||||| ||||||||||||| | ||||||    |||||| ||||| ||||||||||  |||||||||||||||    
T  15543272 tattacttttcccaccttgctgccttctcgcgcgccctacaaaatttccaaaaatacccatggtccagattatataatccagactagattgttagtgatt 15543173  T
Q  189 ttcggaaaaagaaatctggatca-gatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 257  Q
    |||||||||  ||||  ||| || ||||||||||  |||||| |||||||||||||||||||||||||||    
T  15543172 ttcggaaaattaaattcggaacaagatgttatgtgcttttttttgtctttctttgatgtcaagggtctct 15543103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 258
Target Start/End: Original strand, 16451638 - 16451806
Alignment:
Q  90 attacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattt 189  Q
    ||||||||||| | | |||||||| ||||||| | || |||||||| | ||||||    ||||| |||||| ||||||| || |||||||||||||||||    
T  16451638 attacttttcccaccctgctgccttctcgcgcgctctgcaaaattttcaaaaatacccttggtctggattatataatccggaccagattgttagtgattt 16451737  T
Q  190 tcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||  |||||  || ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  16451738 tcggaaaacaaaatccagaccagatgttatgtgcttttttgtgtctttctttgatgtcaagggtctctg 16451806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 87 - 258
Target Start/End: Original strand, 16023572 - 16023743
Alignment:
Q  87 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 186  Q
    |||||||||||| | ||| | |||| | |||||||||||| |||||||||||||||||   ||||| ||||||||||||| | ||  | |||||||||||    
T  16023572 actattactttttccatcctactgcgttctcgcgcaccctgcaaaatttactaaaatacccctggttcggattacataattcggacaatattgttagtga 16023671  T
Q  187 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| ||| || | | ||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  16023672 tttccggtaacaaatatccggaccagatcttatgtaattttctgtgtctttctttgatgtcaagggtctctg 16023743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 56464016 - 56463909
Alignment:
Q  151 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 250  Q
    |||||||||  |||||||  | |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||    
T  56464016 gtccggattgtataatccgaatcagattgttagtgattttcggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaag 56463917  T
Q  251 ggtctctg 258  Q
    ||||||||    
T  56463916 ggtctctg 56463909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 106 - 258
Target Start/End: Original strand, 31092824 - 31092976
Alignment:
Q  106 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 205  Q
    |||||||| ||||||| | ||| ||||||||||||||||   ||| ||||||||||||| ||| || || ||||||||| ||||  ||||| ||||||||    
T  31092824 tgctgccttctcgcgcgctctataaaatttactaaaatacccctgctccggattacatattccggaccaaattgttagttatttctggaaacagaaatct 31092923  T
Q  206 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||| |||||||||||||||| |  |||||||||||||||||||||| ||||||    
T  31092924 ggaccagatgttatgtaattctccgtgtctttctttgatgtcaaggatctctg 31092976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 35320330 - 35320157
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||| | | |||| ||||| ||||||| |||| |||||||| | ||||||   ||||||||||||| ||||||| || ||||||||||||    
T  35320330 agactattacttttaccaccttggtgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagt 35320231  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||| |||  |   |||| ||| ||||||||||||  |||||||||||||||||| ||||||||||| ||||    
T  35320230 gatttttggattatataatccggaccagatgttatgtgcttttttgtgtctttcttttatgtcaagggtatctg 35320157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 38218620 - 38218535
Alignment:
Q  173 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||| | |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218620 cagattgttagtgatttccagaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 38218535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 45458038 - 45458174
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||||||||||||||  || | |||||||||||||||||    ||||||||||||||||||||  | |||||| |||||    
T  45458038 agactattacttttcccaccctgctgcctcctcgcgtgccttgcaaaatttactaaaatacccttggtccggattacataatccgaaccagattattagt 45458137  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgt 221  Q
     ||||||| ||| | ||||||||||||||||||||||    
T  45458138 tattttcgaaaacataaatctggatcagatgttatgt 45458174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 2016226 - 2016063
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    ||||||| |||||||| | | |||||||| || |||| || |||| ||||||| ||||||    ||||  |||||| ||||||| ||  |||||||||||    
T  2016226 agactatcacttttcccaccctgctgccttcttgcgcgcc-tacataatttacaaaaatacccatggtatggattatataatccggactagattgttagt 2016128  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaa 249  Q
    ||| | ||||||| |||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  2016127 gatatccggaaaacgaaatccggaccagatgttatgtgattttttgtgtctttctttgatgtcaa 2016063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 86 - 258
Target Start/End: Complemental strand, 4190308 - 4190136
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | || || || || |||| |||| |||||||| | ||||||   ||||| ||||||| ||||||| || ||||||||||| |    
T  4190308 gactattacttttcccaccctgttgtcttcttgcgcgcccttcaaaatttccaaaaatacccctggttcggattatataatcctgaccagattgttagcg 4190209  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||| |||||||  ||||  ||| || |||||||||  ||||||||||||||||||||||||| |||||||||    
T  4190208 atttccggaaaattaaattcggaccaaatgttatgtgcttttttgtgtctttctttgatgtcatgggtctctg 4190136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 258
Target Start/End: Complemental strand, 28311325 - 28311153
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | |||||||| |||||||  ||| ||||||||   ||| ||   ||||| ||||| | ||||||| || |||||||||||||    
T  28311325 gactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaatttcaaaaattacccctggttcggataatataatccggaccagattgttagtg 28311226  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||| ||||||   |||| ||| |||||||||||   |||||||||||||||||| ||| ||||||||||||    
T  28311225 atttttggaaaatttaatccggaccagatgttatgcgtttttttgtgtctttctttaatgccaagggtctctg 28311153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 4047906 - 4048008
Alignment:
Q  155 ggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 254  Q
    |||||| ||||| || | ||||||||||||||| | |||| || ||||||| || ||||||||||||  |||||||||||||||||||||||||||||||    
T  4047906 ggattatataattcaaatcagattgttagtgatatccggataatgaaatctagaccagatgttatgtg-ttttttgtgtctttctttgatgtcaagggtc 4048004  T
Q  255 tctg 258  Q
    ||||    
T  4048005 tctg 4048008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 258
Target Start/End: Original strand, 45924322 - 45924474
Alignment:
Q  106 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttc-ggaaaaagaaatc 204  Q
    |||||||| ||||||| || | ||||||||   ||||||   ||||||||||||| ||||||| || || |||||||||||||||| |||| |  ||||     
T  45924322 tgctgccttctcgcgcgccatgcaaaatttttaaaaatacccctggtccggattatataatccggaccaaattgttagtgattttccggaacattaaatt 45924421  T
Q  205 tggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
     ||| ||||||||||||  |||| ||||||||||||||||||||| ||||||||    
T  45924422 cggaccagatgttatgtgctttt-tgtgtctttctttgatgtcaatggtctctg 45924474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 49374021 - 49374194
Alignment:
Q  85 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 184  Q
    |||||||||||||||| | | |||| ||| ||||||| |||| |||||||| | ||||||   ||||||| ||||| | ||||| ||  ||||||||| |    
T  49374021 agactattacttttcccaccctgctaccttctcgcgcgccctgcaaaattttcaaaaatacccctggtccagattatacaatccggacgagattgttaat 49374120  T
Q  185 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||   || ||||  ||||| ||| || ||||||||   ||||||||||||||||||||||||||| |||||||    
T  49374121 gatccccgaaaaacaaaatccggaccatatgttatgcgcttttttgtgtctttctttgatgtcaagagtctctg 49374194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 6963235 - 6963330
Alignment:
Q  163 taatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||| || ||||||||||||||||||| | |||   |||| ||| ||||||||||||  |||| ||||||||||||| ||||||||||||||||    
T  6963235 taatccggaccagattgttagtgattttcaggaaattgaatccggaccagatgttatgtgcttttctgtgtctttctttaatgtcaagggtctctg 6963330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 33280862 - 33280957
Alignment:
Q  163 taatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||| || ||||||||||||||||| || ||| ||||||||||| || |||||||||  |||| || |||||||||||||||| || |||||||    
T  33280862 taatccggaccagattgttagtgatttccgaaaacagaaatctggaccaaatgttatgtgtttttctgcgtctttctttgatgtcgagtgtctctg 33280957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 168961 - 168832
Alignment:
Q  108 ctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgg 207  Q
    |||||| ||||||  ||||||||||||| | || |||   ||||| ||||||| ||||| | || |||||||||||||||||| ||||| ||||||| ||    
T  168961 ctgccttctcgcgtgccctacaaaattttcaaatatacccctggttcggattatataattcggaccagattgttagtgatttttggaaatagaaatccgg 168862  T
Q  208 atcagatgttatgtaattttttgtgtcttt 237  Q
    |   ||||||||||  |||| |||||||||    
T  168861 aagtgatgttatgtgcttttctgtgtcttt 168832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 13721187 - 13721219
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  13721187 ttttgtgtctttctttgatgtcaagggtctctg 13721219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 16684538 - 16684506
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  16684538 ttttgtgtctttctttgatgtcaagggtctctg 16684506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 38990944 - 38990912
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  38990944 ttttgtgtctttctttgatgtcaagggtctctg 38990912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 45461323 - 45461359
Alignment:
Q  216 ttatgtaattttttgtgtctttctttgatgtcaaggg 252  Q
    |||||||||||| ||||||||||||||||||||||||    
T  45461323 ttatgtaattttctgtgtctttctttgatgtcaaggg 45461359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 45659806 - 45659774
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  45659806 ttttgtgtctttctttgatgtcaagggtctctg 45659774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 47985973 - 47985944
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtct 255  Q
    ||||||||||||||||||||||||||||||    
T  47985973 ttttgtgtctttctttgatgtcaagggtct 47985944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 438743 - 438898
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | |||||||| ||||||||||||  ||||||||||||||| |   |||| |||||||||||| | ||| |||||||||||||    
T  438743 gactattacttttcccaccatgctgccttctcgcgcaccctgaaaaatttactaaaatgtccttggttcggattacataaactagatcagattgttagtg 438842  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttcttt 241  Q
    ||||  ||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  438843 atttatggaaacagaaatctggaccagatgttatctaattttttgtgtctttcttt 438898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 303452 - 303624
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||||| | | ||||| ||||||||||| ||| |||||||||||||||||   |||||||||||||  |||||| || |||||||||||||    
T  303452 gactattacttttcccaccctgctgtctcctcgcgcatcctgcaaaatttactaaaatacccctggtccggattatgtaatccggaccagattgttagtg 303551  T
Q  186 attttcggaaaaagaaatctggatcagatgtt-atgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
     ||| |||||| ||||||| |||| ||||||| |||||||||| ||||||||||||| ||||||| ||||||||    
T  303552 -tttccggaaacagaaatccggattagatgttaatgtaattttatgtgtctttctttaatgtcaatggtctctg 303624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 31271051 - 31271211
Alignment:
Q  89 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 188  Q
    |||||||||||| | || ||||||| ||||||| |||| |||||||||||||||||   ||||| ||||||||||||||| || ||||||||||||||||    
T  31271051 tattacttttcccacct-gctgccttctcgcgcgccctgcaaaatttactaaaataaccctggttcggattacataatccggaccagattgttagtgatt 31271149  T
Q  189 ttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 250  Q
    | || ||| ||||||| ||| ||||||||||||  |||| ||||||||||||||||||||||    
T  31271150 tccgaaaacagaaatccggaccagatgttatgtgtttttctgtgtctttctttgatgtcaag 31271211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 86 - 258
Target Start/End: Complemental strand, 31723308 - 31723139
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||||||||| | | | |||| ||| ||||| || |||||||||||||||||||||   ||||| ||||||||||||||| || |||||||| ||||    
T  31723308 gactattactttttccaccatgctcccttctcgcccatcctacaaaatttactaaaatacccctggttcggattacataatccggatcagattgtcagtg 31723209  T
Q  186 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||| | ||||  ||   | | ||||||||||||| |||||| |||||||||||||||||||||||    
T  31723208 attttcggaaacataaattcgg---acaagttatgtaattttatgtgtcattctttgatgtcaagggtctctg 31723139  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 9305335 - 9305225
Alignment:
Q  148 ctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtc 247  Q
    ||||| ||||||| ||||||  || |||||||||||||||   |||||||  ||||  ||||||||||||||||  ||||||||||||||||||||||||    
T  9305335 ctggttcggattatataatctggaccagattgttagtgataaccggaaaattaaatacggatcagatgttatgtgcttttttgtgtctttctttgatgtc 9305236  T
Q  248 aagggtctctg 258  Q
    |||||||||||    
T  9305235 aagggtctctg 9305225  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 31318227 - 31318392
Alignment:
Q  86 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 185  Q
    ||||||| ||||||| | | |||||||| ||||||  |||| |||||||| | ||||||    ||||||||||||| |||||| || |||||||||||||    
T  31318227 gactatttcttttcccaccatgctgccttctcgcgtgccctgcaaaatttccgaaaatacccatggtccggattacgtaatccggaccagattgttagtg 31318326  T
Q  186 attttcggaaaaagaaatctgg-atcagatgttatgtaattttttgtgtctttctttgatgtcaagg 251  Q
    ||||| ||||||  |||| ||| | || ||||||||    |||||||||||||||||||||||||||    
T  31318327 atttttggaaaattaaatatggaaccaaatgttatg-cgctttttgtgtctttctttgatgtcaagg 31318392  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 480159 - 480191
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||||||||||||||||||||||||    
T  480159 ttttgtgtctttctttgatgtcaagggtctctg 480191  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 12305376 - 12305343
Alignment:
Q  225 tttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||||||| ||||    
T  12305376 tttttgtgtctttctttgatgtcaagggtatctg 12305343  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 16395093 - 16395185
Alignment:
Q  163 taatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||  |||||||||||| |||| ||||| ||||||  ||| |||||||| ||||||||| |||  ||||||||| | | |||||||||||    
T  16395093 taatccagactagattgttagtgttttt-ggaaacagaaattcggaccagatgttttgtaattttctgt--ctttctttgctataaagggtctctg 16395185  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 29435939 - 29435971
Alignment:
Q  226 ttttgtgtctttctttgatgtcaagggtctctg 258  Q
    ||||||||||||||||||||||||| |||||||    
T  29435939 ttttgtgtctttctttgatgtcaagagtctctg 29435971  T

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Target: scaffold1301 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 1449 - 1531
Alignment:
Q  176 attgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 258  Q
    |||||||||||| | ||||||| |||||| ||| || ||||||||  ||||| ||||||||||||||||||||||||||||||    
T  1449 attgttagtgatatccggaaaacgaaatccggaccatatgttatgcgattttctgtgtctttctttgatgtcaagggtctctg 1531  T

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