View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_high_21 (Length: 250)
Name: NF1078_high_21
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_high_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 5432949 - 5433171
Alignment:
| Q |
29 |
aaaacactttattttttg-tcgggatcaatgtgttctttcgaatcaaaacaaacatgacaccaccatcagtttcaacaccaagactgtgaggtataacat |
127 |
Q |
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| T |
5432949 |
aaaacacttttttttttggtcgggatcaatgtgttctttcgaatcaaaacaaacatgacaccaccatcagtttcaacaccaagactgtgaggtataacat |
5433048 |
T |
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| Q |
128 |
ctaacaacaacaagtcttgaattttcttgtctccttcaacactcaatattgctgcttgaaccgaggcatcatacaccacaacttcataagaattaatgct |
227 |
Q |
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| T |
5433049 |
ctaacaacaacaagtcttgaattttcttgtctccttcaacactcaatatcgctgcttgaaccgaggcatcatacaccacaacttcataaggattaatgct |
5433148 |
T |
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| Q |
228 |
tttgcatggctctttgatttctc |
250 |
Q |
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| T |
5433149 |
tttgcatggctctttgatttctc |
5433171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 5446420 - 5446216
Alignment:
| Q |
40 |
ttttttgtcgggatcaatgtgttctttcgaatcaaaacaaacatgacaccaccatcagtttcaacaccaagactgtgaggtataacatctaacaacaaca |
139 |
Q |
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| T |
5446420 |
tttttcgtagggatcatagtattctttggaatcaaaacagacatgacaccacctttagtttcaacaccaagactaaaaggcataacatccaacagtaaca |
5446321 |
T |
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| Q |
140 |
agtcttgaattttcttgtctccttcaacactcaatattgctgcttgaaccgaggcatcatacaccacaacttcataagaattaatgcttttgcatggctc |
239 |
Q |
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| T |
5446320 |
agtcttcgattttcttgtctccttcagtattcaatattgctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctc |
5446221 |
T |
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| Q |
240 |
tttga |
244 |
Q |
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| T |
5446220 |
tttga |
5446216 |
T |
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