View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_high_22 (Length: 250)
Name: NF1078_high_22
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29169753 - 29169533
Alignment:
| Q |
1 |
ccttgtgtaaataagtcgcatccttactaatctgacaaaccttcatcaaagcaatttaataccaataatttgaactttgaaaagatgtacatattcatga |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29169753 |
ccttgtgtaaataagtcgcatccttactaatttgacaaaccttcatcaaagcaatttaataccaataatttgaactttgaaaagatgtacatattcatga |
29169654 |
T |
|
| Q |
101 |
agtagactaaatccatgtgtgccatcacaatcttcatcatattttaaaagaaaaaagtgaacagtgagattatggaattttgacatggtttggcaaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29169653 |
agtagactaaatccatgtgtgccatcacaatcttcatcatattttaaaagaaaaaagtgaacagtgagattatggaattttgacatggtttggcaaaaat |
29169554 |
T |
|
| Q |
201 |
aaggcatttggtggaaatttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
29169553 |
aaggcatttggtggaaatttt |
29169533 |
T |
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