View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_high_23 (Length: 250)
Name: NF1078_high_23
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 29170073 - 29170275
Alignment:
| Q |
42 |
ggcctcaaaattttcactaattttatgattggttaatttagtaaaaaattaatcaatcacataaatacatataacatttacaagtataaaa-ctaattaa |
140 |
Q |
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| T |
29170073 |
ggcctaaaaattttcactaattttataattggttaatttagtaaaaaactaatcaatcacatgaatacatataacatttacaagtataaaaactaattaa |
29170172 |
T |
|
| Q |
141 |
agttcttagagctctaattttatttaaattttactttaattctatagatttgtggtattccttttagtcttcttaatcggatcaacttttgatattcatc |
240 |
Q |
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| T |
29170173 |
agttcatagagctctaattttatttaaattttactttaattctatagatttgtggtattcgttttagtttttttaatcggatcaacttttgatattcatc |
29170272 |
T |
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| Q |
241 |
tca |
243 |
Q |
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||| |
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| T |
29170273 |
tca |
29170275 |
T |
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